We present details of design of elliptically bent Kirkpatrick-Baez mirrors developed and successfully used at the Advanced Light Source for submicron focusing. A distinctive feature of the mirror design is an active temperature stabilization based on a Peltier element attached directly to the mirror body. The design and materials have been carefully optimized to provide high heat conductance between the mirror body and substrate. We describe the experimental procedures used when assembling and precisely shaping the mirrors, with special attention paid to laboratory testing of the mirror-temperature stabilization. For this purpose, the temperature dependence of the surface slope profile of a specially fabricated test mirror placed inside a temperature-controlled container was measured. We demonstrate that with active mirror-temperature stabilization, a change of the surrounding temperature by more than 3K does not noticeably affect the mirror figure. Without temperature stabilization, the surface slope changes by approximately 1.5 ?mu rad rms (primarily defocus) under the same conditions.

We report on the design and construction of a higher energy Scanning Transmission X-ray Microscope on a new bend magnet beam line at the Advanced Light Source. Previously we have operated such an instrument on a bend magnet for C, N and O 1s NEXAFS spectroscopy. The new instrument will have similar performance at higher energies up to and including the S 1s edge at 2472eV. A new microscope configuration is planned. A more open geometry will allow a fluorescence detector to count emitted photons from the front surface of the sample. There will be a capability for zone plate scanning in addition to the more conventional sample scanning mode. This will add the capability for imaging a massive sample at high resolution over a limited field of view, so that heavy reaction cells may be used to study processes in-situ, exploiting the longer photon attenuation length and the longer zone plate working distances available at higher photon energy. The energy range will extend down to include the C1s edge at 300eV, to allow high energy NEXAFS microscopic studies to correlate with the imaging of organics in the same sample region of interest.

I discuss the phase diagram of QCD in the large N_c limit. Quarkyonic Matter is described. The properties of QCD matter as measured in the abundance of produced particles are shown to be consistent with this phase diagram. A possible triple point of Hadronic Mater, Deconfined Matter and Quarkyonic matter is shown to explain various behaviors of ratios of particles abundances seen in CERN fixed target experiments.

There is a need for higher resolution spectrometers as a tool for inelastic x-ray scattering. Currently, resolving power around R = 10,000 is advertised. Measured RIXS spectra are often limited by this instrumental resolution and higher resolution spectrometers using conventional gratings would be prohibitively large. We are engaged in a development program to build blazed multilayer grating structures for diffracting soft x-rays in high order. This leads to spectrometers with dispersion much higher than is possible using metal coated-gratings. The higher dispersion then provides higher resolution and the multilayer gratings are capable of operating away from grazing incidence as required. A spectrometer design is presented with a total length 3.8m and capable of 10{sup 5} resolving power.

An upgrade of the Advanced Light Source to enable top-off operation has been completed during the last four years. The final work centered around radiation safety aspects, culminating in a systematic proof that top-off operation is equally safe as decaying beam operation. Commissioning and transition to full user operations happened in late 2008 and early 2009. Top-off operation at the ALS provides a very large increase in time-averaged brightness (by about a factor of 10) as well as improvements in beam stability. The following sections provide an overview of the radiation safety rationale, commissioning results, as well as experience in user operations.

We report on the current state of surface slope metrology on deformable mirrors for soft x-rays at the Advanced Light Source (ALS). While we are developing techniques for in situ at-wavelength tuning, we are refining methods of ex situ visible-light optical metrology to achieve sub-100-nrad accuracy. This paper reports on laboratory studies, measurements and tuning of a deformable test-KB mirror prior to its use. The test mirror was bent to a much different optical configuration than its original design, achieving a 0.38 micro-radian residual slope error. Modeling shows that in some cases, by including the image conjugate distance as an additional free parameter in the alignment, along with the two force couples, fourth-order tangential shape errors (the so-called bird shape) can be reduced or eliminated.

The U.S. Department of Energy Office of Environmental Management (DOE-EM) is responsible for the Decontamination and Decommissioning (D&D) of nuclear facilities throughout the DOE Complex. Some of these facilities will be completely dismantled, while others will be partially dismantled and the remaining structure will be stabilized with cementitious fill materials. The latter is a process known as In-Situ Decommissioning (ISD). The ISD decision process requires a detailed understanding of the existing facility conditions, and operational history. System information and material properties are need for aged nuclear facilities. This literature review investigated the properties of aged concrete structures affected by radiation. In particular, this review addresses the Savannah River Site (SRS) isotope production nuclear reactors. The concrete in the reactors at SRS was not seriously damaged by the levels of radiation exposure. Loss of composite compressive strength was the most common effect of radiation induced damage documented at nuclear power plants.

Isotope effects (IEs), which arise from differences in zero point energies (ZPEs) between a parent and isotopically substituted bond, have been used extensively by chemists to probe molecular interactions and reactivity. Due to the anharmonicity of the C-H/D vibrational potential energy function and the lower ZPE of a C-D bond, the average C-D bond length is typically {approx}0.005 {angstrom} shorter than an equivalent C-H bond. It is this difference in size that is often invoked to explain the observation of secondary, inverse kinetic isotope effects (KIEs) in chemical processes which proceed through a sterically strained transition state. This so-called 'steric isotope effect' (SIE) has been observed in processes such as the racemization of ortho-substituted biphenyls[6] and phenanthrenes, ring flipping of cyclophanes, and more recently in the deslipping of rotaxanes, where substitution of the sterically less demanding deuterium for protium results in rate accelerations for these processes. Herein, we use deuterium substitution in a cationic guest molecule to probe the sensitivity limits of the guest exchange process from a highly-charged supramolecular host.

Results for the naive-time-reversal-odd quark distributions in a light-cone quark model are presented. The final-state interaction effects are generated via single-gluon exchange mechanism. The formalism of light-cone wave functions is used to derive general expressions in terms of overlap of wave-function amplitudes describing the different orbital angular momentum components of the nucleon. In particular, the model predictions show a dominant contribution from S- and P-wave interference in the Sivers function and a significant contribution also from the interference of P and D waves in the Boer-Mulders function. The favourable comparison with existing phenomenological parametrizations motivates further applications to describe azimuthal asymmetries in hadronic reactions.

Leading and subleading twist transverse momentum dependent parton distribution functions (TMDs) are studied in a quark model framework provided by the bag model. A complete set of relations among different TMDs is derived, and the question is discussed how model-(in)dependent such relations are. A connection of the pretzelosity distribution and quark orbital angular momentum is derived. Numerical results are presented, and applications for phenomenology discussed. In particular, it is shown that in the valence-x region the bag model supports a Gaussian Ansatz for the transverse momentum dependence of TMDs.

We study the twist-three fragmentation function contribution to the single transverse spin asymmetries in inclusive hadron production in pp collisions, pp->h+X. In particular, we evaluate the so-called derivative contribution which dominates the spin asymmetry in the forward direction of the polarized proton. With certain parametrizations for the twist-three fragmentation function, we estimate its contribution to the asymmetry of pi0 production at RHIC energy. We find that the contribution is sizable and might be responsible for the big difference between the asymmetries in eta and pi0 productions observed by the STAR collaboration at RHIC.

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To accurately predict the light collection from a scintillating crystal through Monte Carlo simulations, it is crucial to know the angular distribution from the surface reflectance. Current Monte Carlo codes allow the user to set the optical reflectance to a linear combination of backscatter spike, specular spike, specular lobe, and Lambertian reflections. However, not all light distributions can be expressed in this way. In addition, the user seldom has the detailed knowledge about the surfaces that is required for accurate modeling. We have previously measured the angular distributions within BGO crystals and now incorporate these data as look-up-tables (LUTs) into modified Geant4 and GATE Monte Carlo codes. The modified codes allow the user to specify the surface treatment (ground, etched, or polished), the attached reflector (Lumirror(R), Teflon(R), ESR film, Tyvek(R), or TiO paint), and the bonding type (air-coupled or glued). Each LUT consists of measured angular distributions with 4o by 5o resolution in theta and phi, respectively, for incidence angles from 0? to 90? degrees, in 1o-steps. We compared the new codes to the original codes by running simulations with a 3 x 10 x 30 mm3 BGO crystal coupled to a PMT. The simulations were then compared to measurements. …

The Taiwanese-American Occultation Survey (TAOS) project has collected more than a billion photometric measurements since 2005 January. These sky survey data - covering timescales from a fraction of a second to a few hundred days - are a useful source to study stellar variability. A total of 167 star fields, mostly along the ecliptic plane, have been selected for photometric monitoring with the TAOS telescopes. This paper presents our initial analysis of a search for periodic variable stars from the time-series TAOS data on one particular TAOS field, No. 151 (RA = 17{sup h} 30{sup m} 6.67{sup s}, Dec = 27 degrees, 17 minutes, 30 seconds, J2000), which had been observed over 47 epochs in 2005. A total of 81 candidate variables are identified in the 3 square degree field, with magnitudes in the range 8 < R < 16. On the basis of the periodicity and shape of the lightcurves, 32 variables, 18 of which were previously unknown, are classified as RR Lyrae, Cepheid, {delta} Scuti, SX Phonencis, semi-regular and eclipsing binaries.

The Saltstone Facility at the Savannah River Site (SRS) immobilizes low-level liquid waste into Saltstone to be disposed of in the Z-Area Saltstone Disposal Facility, Class Three Landfill. In order to meet the permit conditions and regulatory limits set by the South Carolina Department of Health and Environmental Control (SCDHEC), the Resource Conservation and Recovery Act (RCRA) and the Environmental Protection Agency (EPA), both the low-level salt solution and Saltstone samples are analyzed quarterly. Waste acceptance criteria (WAC) are designed to confirm the salt solution sample from the Tank Farm meets specific radioactive and chemical limits. The toxic characteristic leaching procedure (TCLP) is used to confirm that the treatment has immobilized the hazardous constituents of the salt solution. This paper discusses the methods used to characterize the salt solution and final Saltstone samples from 2007-2009.

This article studies the silkworm Bombyx mori, and hypothesizes that allometric relationships for metabolism both across all developmental stages and within each stage would not reflect conventional scaling coefficients.

Background: With the emergence of a completed genome sequence of the freshwater crustacean Daphnia pulex, construction of genomic-scale sequence databases for additional crustacean sequences are important for comparative genomics and annotation. Porcelain crabs, genus Petrolisthes, have been powerful crustacean models for environmental and evolutionary physiology with respect to thermal adaptation and understanding responses of marine organisms to climate change. Here, we present a large-scale EST sequencing and cDNA microarray database project for the porcelain crab Petrolisthes cinctipes. Methodology/Principal Findings: A set of ~;;30K unique sequences (UniSeqs) representing ~;;19K clusters were generated from ~;;98K high quality ESTs from a set of tissue specific non-normalized and mixed-tissue normalized cDNA libraries from the porcelain crab Petrolisthes cinctipes. Homology for each UniSeq was assessed using BLAST, InterProScan, GO and KEGG database searches. Approximately 66percent of the UniSeqs had homology in at least one of the databases. All EST and UniSeq sequences along with annotation results and coordinated cDNA microarray datasets have been made publicly accessible at the Porcelain Crab Array Database (PCAD), a feature-enriched version of the Stanford and Longhorn Array Databases.Conclusions/Significance: The EST project presented here represents the third largest sequencing effort for any crustacean, and the largest effort for any crab species. …

In their interesting comment on 'Coherent {rho}0 photoproduction in bulk matter at high energies', Rogers and Strikman point out that, at high energies, q{bar q} dipoles with small separations (d) become more important, and that most of the growth of the cross-section is 'driven by the increasingly large contributions from small size (high mass) configurations'; at photon energies of 10{sup 20} eV, over half of the total cross-section is due to dipoles smaller than 0.25 fm. They state that charm production will increase, and may be as much as 30% of the cross-section. The coherent photoproduction of heavier states requires higher energies than coherent {rho} photoproduction, because the formation length scales as 1/M{sup 2}. For the J/{psi}, the required photon energy is 14 times higher than for the {rho}. We agree that higher-mass states become important at higher energies. However, at this point, additional factors come into play; as we note after Eq. (7), our calculation is only properly normalized when the conversion probability is relatively small. At the energies where coherent production of high mass states is possible, the coherent {rho} production probability is large, and it is necessary to consider reverse reactions such as vector meson 'back-propagation' into …

A high resolution grating spectrometer (HRGS) with 2400 line/mm variable line spacing grating for the 10-50 {angstrom} wavelength range has been designed for laser-produced plasma experiments at the Lawrence Livermore National Laboratory (LLNL). The spectrometer has a large radius of curvature, R=44.3 m, is operated at a 2{sup o} grazing angle and can record high signal-to-noise spectra when used with a low-noise, cooled, charge-coupled device detector. The instrument can be operated with a 10-25 {micro}m wide slit to achieve the best spectral resolving power on laser plasma sources, approaching 2000, or in slitless mode with a small symmetrical emission source. Results will be presented for the spectral response of the spectrometer cross-calibrated at the LLNL Electron Beam Ion Trap facility using the broadband x-ray energy EBIT Calorimeter Spectrometer (ECS).

The electric field dependence of charge carrier transport and the effect of carrier heating in disordered conjugated polymers were investigated. A parameter-free multiscale methodology consisting of classical molecular dynamics simulation for the generation of the atomic structure, large system electronic structure and electron-phonon coupling constants calculations and the procedure for extracting the bulk polymer mobility, was used. The results suggested that the mobility of a fully disordered poly(3-hexylthiophene) (P3HT) polymer increases with electric field which is consistent with the experimental results on samples of regiorandom P3HT and different from the results on more ordered regioregular P3HT polymers, where the opposite trend is often observed at low electric fields. We calculated the electric field dependence of the effective carrier temperature and showed however that the effective temperature cannot be used to replace the joint effect of temperature and electric field, in contrast to previous theoretical results from phenomenological models. Such a difference was traced to originate from the use of simplified Miller-Abrahams hopping rates in phenomenological models in contrast to our considerations that explicitly take into account the electronic state wave functions and the interaction with all phonon modes.

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To accurately estimate the flare contribution from the out-of-band (OOB), the integration of a DUV source into the SEMATECH Berkeley 0.3-NA Micro-field Exposure tool is proposed, enabling precisely controlled exposures along with the EUV patterning of resists in vacuum. First measurements evaluating the impact of bandwidth selected exposures with a table-top set-up and subsequent EUV patterning show significant impact on line-edge roughness and process performance. We outline a simulation-based method for computing the effective flare from resist sensitive wavelengths as a function of mask pattern types and sizes. This simulation method is benchmarked against measured OOB flare measurements and the results obtained are in agreement.

Transactional Memory (TM) has received significant attention recently as a mechanism to reduce the complexity of shared memory programming. We explore the potential of TM to improve OpenMP applications. We combine a software TM (STM) system to support transactions with an OpenMP implementation to start thread teams and provide task and loop-level parallelization. We apply this system to two application scenarios that reflect realistic TM use cases. Our results with this system demonstrate that even with the relatively high overheads of STM, transactions can outperform OpenMP critical sections by 10%. Overall, our study demonstrates that extending OpenMP to include transactions would ease programming effort while allowing improved performance.