Month

Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation (open access)

Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation

Cyanobacteria and some chemoautotrophic bacteria are able to grow in environments with limiting CO2 concentrations by employing a CO2-concentrating mechanism (CCM) that allows them to accumulate inorganic carbon in their cytoplasm to concentrations several orders of magnitude higher than that on the outside. The final step of this process takes place in polyhedral protein microcompartments known as carboxysomes, which contain the majority of the CO2-fixing enzyme, RubisCO. The efficiency of CO2 fixation by the sequestered RubisCO is enhanced by co-localization with a specialized carbonic anhydrase that catalyzes dehydration of the cytoplasmic bicarbonate and ensures saturation of RubisCO with its substrate, CO2. There are two genetically distinct carboxysome types that differ in their protein composition and in the carbonic anhydrase(s) they employ. Here we review the existing information concerning the genomics, structure and enzymology of these uniquely adapted carbonic anhydrases, which are of fundamental importance in the global carbon cycle.
Date: June 23, 2010
Creator: Cannon, Gordon C.; Heinhorst, Sabine & Kerfeld, Cheryl A.
Object Type: Article
System: The UNT Digital Library
Results of the FY09 Enhanced DOE High Level Waste Melter Throughput Studies at SRNL (open access)

Results of the FY09 Enhanced DOE High Level Waste Melter Throughput Studies at SRNL

High-level waste (HLW) throughput (i.e., the amount of waste processed per unit time) is a function of two critical parameters: waste loading (WL) and melt rate. For the Waste Treatment and Immobilization Plant (WTP) at the Hanford Site and the Defense Waste Processing Facility (DWPF) at the Savannah River Site (SRS), increasing HLW throughput would significantly reduce the overall mission life cycle costs for the Department of Energy (DOE). The objective of this task is to develop data, assess property models, and refine or develop the necessary models to support increased WL of HLW at SRS. It is a continuation of the studies initiated in FY07, but is under the specific guidance of a Task Change Request (TCR)/Work Authorization received from DOE headquarters (Project Number RV071301). Using the data generated in FY07, FY08 and historical data, two test matrices (60 glasses total) were developed at the Savannah River National Laboratory (SRNL) in order to generate data in broader compositional regions. These glasses were fabricated and characterized using chemical composition analysis, X-ray Diffraction (XRD), viscosity, liquidus temperature (TL) measurement and durability as defined by the Product Consistency Test (PCT). The results of this study are summarized below: (1) In general, the …
Date: June 23, 2010
Creator: Johnson, F. & Edwards, T.
Object Type: Report
System: The UNT Digital Library
The Carboxysome and Other Bacterial Microcompartments (open access)

The Carboxysome and Other Bacterial Microcompartments

- Carboxysomes are part of the carbon concentrating mechanism in cyanobacteria and chemoautotrophs. - Carboxysomes are a subclass of bacterial microcompartments (BMCs); BMCs can encapsulate a range of metabolic processes. - Like some viral particles, the carboxysome can be modeled as an icosahedron-in its case, having 4,000-5,000 hexameric shell subunits and 12 surface pentamers to generate curvature. - The threefold axis of symmetry of the CsoS1D protein in carboxysomes forms a pore that can open and close, allowing for selective diffusion. - Genetic modules encoding BMC shell proteins and the enzymes that they encapsulate are horizontally transferable, suggesting they enable bacteria to adapt to diverse environments.
Date: June 23, 2010
Creator: Kerfeld, Cheryl A.; Greenleaf, William B. & Kinney, James N.
Object Type: Article
System: The UNT Digital Library
Meteorology-induced variations in the spatial behavior of summer ozone pollution in Central California (open access)

Meteorology-induced variations in the spatial behavior of summer ozone pollution in Central California

Cluster analysis was applied to daily 8 h ozone maxima modeled for a summer season to characterize meteorology-induced variations in the spatial distribution of ozone. Principal component analysis is employed to form a reduced dimension set to describe and interpret ozone spatial patterns. The first three principal components (PCs) capture {approx}85% of total variance, with PC1 describing a general spatial trend, and PC2 and PC3 each describing a spatial contrast. Six clusters were identified for California's San Joaquin Valley (SJV) with two low, three moderate, and one high-ozone cluster. The moderate ozone clusters are distinguished by elevated ozone levels in different parts of the valley: northern, western, and eastern, respectively. The SJV ozone clusters have stronger coupling with the San Francisco Bay area (SFB) than with the Sacramento Valley (SV). Variations in ozone spatial distributions induced by anthropogenic emission changes are small relative to the overall variations in ozone amomalies observed for the whole summer. Ozone regimes identified here are mostly determined by the direct and indirect meteorological effects. Existing measurement sites are sufficiently representative to capture ozone spatial patterns in the SFB and SV, but the western side of the SJV is under-sampled.
Date: June 23, 2010
Creator: Jin, Ling; Harley, Robert A. & Brown, Nancy J.
Object Type: Article
System: The UNT Digital Library
Ion Species and Charge States of Vacuum Arc Plasma with Gas Feed and Longitudinal Magnetic Field (open access)

Ion Species and Charge States of Vacuum Arc Plasma with Gas Feed and Longitudinal Magnetic Field

The evolution of copper ion species and charge state distributions is measured for a long vacuum arc discharge plasma operated in the presence of a longitudinal magnetic field of several 10 mT and working gas (Ar). It was found that changing the cathode-anode distance within 20 cm as well as increasing the gas pressure did not affect the arc burning voltage and power dissipation by much. In contrast, burning voltage and power dissipation were greatly increased as the magnetic field was increased. The longer the discharge gap the greater was the fraction of gaseous ions and the lower the fraction of metal ions, while the mean ion charge state was reduced. It is argued that the results are affected by charge exchange collisions and electron impact ionization.
Date: June 23, 2010
Creator: Oks, Efim & Anders, Andre
Object Type: Article
System: The UNT Digital Library
Nevada Test Site 2009 Waste Management Monitoring Report Area 3 and Area 5 Radioactive Waste Management Sites (open access)

Nevada Test Site 2009 Waste Management Monitoring Report Area 3 and Area 5 Radioactive Waste Management Sites

Environmental monitoring data were collected at and around the Area 3 and Area 5 Radioactive Waste Management Sites (RWMSs) at the Nevada Test Site (NTS). These data are associated with radiation exposure, air, groundwater, meteorology, vadose zone, subsidence, and biota. This report summarizes the 2009 environmental data to provide an overall evaluation of RWMS performance and to support environmental compliance and performance assessment (PA) activities. Some of these data (e.g., radiation exposure, air, and groundwater) are presented in other reports. Direct radiation monitoring data indicate exposure levels at the RWMSs are within the range of background levels measured at the NTS. Air monitoring data at the Area 3 and Area 5 RWMSs indicate that tritium concentrations are slightly above background levels. All gamma spectroscopy results for air particulates collected at the Area 3 and Area 5 RWMS were below the minimum detectable concentrations, and concentrations of americium and plutonium are only slightly above detection limits. The measured levels of radionuclides in air particulates and moisture are below derived concentration guides for these radionuclides. Radon flux from waste covers is well below regulatory limits. Groundwater monitoring data indicate that the groundwater in the uppermost aquifer beneath the Area 5 RWMS is …
Date: June 23, 2010
Creator: Waste, NSTec Radioactive
Object Type: Report
System: The UNT Digital Library
Assessing the Impacts of Reduced Noise Operations of Wind Turbines on Neighbor Annoyance: A Preliminary Analysis in Vinalhaven, Maine (open access)

Assessing the Impacts of Reduced Noise Operations of Wind Turbines on Neighbor Annoyance: A Preliminary Analysis in Vinalhaven, Maine

Neighbors living near the 3 turbine, 4.5 MW Vinalhaven, Maine wind power facility, which began operations in late 2009, have complained that the noise from the turbines is unwelcome and annoying. Fox Islands Wind, the owner of the facility, hypothesized that implementing a Noise Reduced Operation (NRO) for the turbines, which effectively limits the turbines maximum rpm and power output, would reduce the sound levels produced by the turbines, and therefore might also reduce the degree to which the neighbors report being annoyed by those sounds. To test this hypothesis in a preliminary fashion, a pilot study was conducted in early 2010, the results of which are the subject of this brief report. The study included asking near-by residents - those within roughly 3000 feet - to rate the sounds and the degree to which they were annoyed by them using logs which they filled out at multiple times during the day on as many days as were possible in the 35 day study period in February and March, 2010. Meanwhile, FIW adjusted the NRO settings of the turbines in a random fashion in the evenings during the same period, but in a pattern that the respondents were not made …
Date: June 23, 2010
Creator: Hoen, Ben; Wiser, Ryan & Eckholdt, Haftan
Object Type: Report
System: The UNT Digital Library
G-Band Vapor Radiometer Profiler (GVRP) Handbook (open access)

G-Band Vapor Radiometer Profiler (GVRP) Handbook

The G-Band Vapor Radiometer Profiler (GVRP) provides time-series measurements of brightness temperatures from 15 channels between 170 and 183.310 GHz. Atmospheric emission in this spectral region is primarily due to water vapor, with some influence from liquid water. Channels between 170.0 and 176.0 GHz are particularly sensitive to the presence of liquid water. The sensitivity to water vapor of the 183.31-GHz line is approximately 30 times higher than at the frequencies of the two-channel microwave radiometer (MWR) for a precipitable water vapor (PWV) amount of less than 2.5 mm. Measurements from the GVRP instrument are therefore especially useful during low-humidity conditions (PWV < 5 mm). In addition to integrated water vapor and liquid water, the GVRP can provide low-resolution vertical profiles of water vapor in very dry conditions.
Date: June 23, 2010
Creator: Caddeau, M. P.
Object Type: Report
System: The UNT Digital Library
Rapid Determination of 237 Np and Pu Isotopes in Water by Inductively Coupled Plasma Mass Spectrometry and Alpha Spectrometry (open access)

Rapid Determination of 237 Np and Pu Isotopes in Water by Inductively Coupled Plasma Mass Spectrometry and Alpha Spectrometry

A new method that allows rapid preconcentration and separation of plutonium and neptunium in water samples was developed for the measurement of {sup 237}Np and Pu isotopes by inductively-coupled plasma mass spectrometry (ICP-MS) and alpha spectrometry; a hybrid approach. {sup 238}U can interfere with {sup 239}Pu measurement by ICP-MS as {sup 238}UH{sup +} mass overlap and {sup 237}Np via peak tailing. The method provide enhanced removal of uranium by separating Pu and Np initially on TEVA Resin, then moving Pu to DGA resin for additional removal of uranium. The decontamination factor for uranium from Pu is almost 100,000 and the decontamination factor for U from Np is greater than 10,000. This method uses stacked extraction chromatography cartridges and vacuum box technology to facilitate rapid separations. Preconcentration is performed using a streamlined calcium phosphate precipitation method. Purified solutions are split between ICP-MS and alpha spectrometry so that long and short-lived Pu isotopes can be measured successfully. The method allows for simultaneous extraction of 20 samples (including QC samples) in 4 to 6 hours, and can also be used for emergency response. {sup 239}Pu, {sup 242}Pu and {sup 237}Np were measured by ICP-MS, while {sup 236}Pu, {sup 238}Pu, and {sup 239}Pu were …
Date: June 23, 2010
Creator: Maxwell, S.; Jones, V.; Culligan, B.; Nichols, S. & Noyes, G.
Object Type: Article
System: The UNT Digital Library
Reaching for the Stars: Dynamic Extreme-Compression Experiments (open access)

Reaching for the Stars: Dynamic Extreme-Compression Experiments

None
Date: June 23, 2010
Creator: Eggert, J H
Object Type: Article
System: The UNT Digital Library
Background Acoustic Noise Models for the IMS Hydroacoustic Stations (open access)

Background Acoustic Noise Models for the IMS Hydroacoustic Stations

None
Date: June 23, 2010
Creator: Harben, P. E. & Hauk, T. F.
Object Type: Article
System: The UNT Digital Library