Herbivores can gain indirect access to recalcitrant carbon present in plant cell walls through symbiotic associations with lignocellulolytic microbes. A paradigmatic example is the leaf-cutter ant (Tribe: Attini), which uses fresh leaves to cultivate a fungus for food in specialized gardens. Using a combination of sugar composition analyses, metagenomics, and whole-genome sequencing, we reveal that the fungus garden microbiome of leaf-cutter ants is composed of a diverse community of bacteria with high plant biomass-degrading capacity. Comparison of this microbiome?s predicted carbohydrate-degrading enzyme profile with other metagenomes shows closest similarity to the bovine rumen, indicating evolutionary convergence of plant biomass degrading potential between two important herbivorous animals. Genomic and physiological characterization of two dominant bacteria in the fungus garden microbiome provides evidence of their capacity to degrade cellulose. Given the recent interest in cellulosic biofuels, understanding how large-scale and rapid plant biomass degradation occurs in a highly evolved insect herbivore is of particular relevance for bioenergy.

The shielding design for the NSLS-II will provide adequate protection for the full injected beam loss in two periods of the ring around the injection point, but the remainder of the ring is shielded for lower losses of {le} 10% full beam. This will require a system to insure that beam losses don't exceed these levels for a period of time that could cause excessive radiation levels outside the shield walls. This beam containment system will measure, provide a level of control and alarm indication of the beam power losses along the beam path from the source (e-gun, linac) thru the injection system and the storage ring. This system will consist of collimators that will provide limits to (and potentially to measure) the beam miss-steering and control the loss points of the charge and monitors that will measure the average beam current losses along the beam path and alarm when this beam power loss exceeds the level set by the shielding specifications. This will require some new ideas in beam loss detection capability and collimation. The initial planning and R&D program will be presented.

The planned luminosity upgrade to LHC is likely to necessitate a large crossing angle and a local crab crossing scheme. For this scheme crab cavities align bunches prior to collision. The scheme requires at least four such cavities, a pair on each beam line either side of the interaction point (IP). Upstream cavities initiate rotation and downstream cavities cancel rotation. Cancellation is usually done at a location where the optics has re-aligned the bunch. The beam line separation near the IP necessitates a more compact design than is possible with elliptical cavities such as those used at KEK. The reduction in size must be achieved without an increase in the operational frequency to maintain compatibility with the long bunch length of the LHC. This paper proposes a suitable superconducting variant of a four rod coaxial deflecting cavity (to be phased as a crab cavity), and presents analytical models and simulations of suitable designs.

Long range beam-beam experiments were conducted during the Run 2009 in the Yellow and the Blue beams of the RHIC accelerator with DC wires. The effects of a long-range interaction with a DC wire on colliding and non-colliding bunches with the aid of beam losses, orbits, tunes were studied. Results from distance scans and an attempt to compensate a long-range interaction with a DC wire is presented. Two DC wires in the vertical plane were installed in the RHIC accelerator in 2006 with the aim of investigating long range (LR) beam-beam effects and a potential compensation. Extensive experiments were conducted focusing mainly on the effect of a wire on single ion beams from 2006-2009. A unique opportunity to compare the effect of the wire on colliding beams and compensation of a single LR beam-beam interaction were conducted in Run2009 with protons at 100 GeV. Due to aperture considerations for decreasing {beta}*, the Blue wire was removed during the shutdown after the Run2009 and the Yellow wire is foreseen to be removed in the near future. Therefore, these experiments serve as the final set of measurements for LR beam-beam with RHIC as a test bed. The relevant RHIC beam and lattice …

RF electron guns with a strained super lattice GaAs cathode can generate polarized electron beam of higher brightness and lower emittance than do DC guns, due to their higher field gradient at the cathode's surface. In a normal conducting RF gun, the extremely high vaccum required by these cathodes can not be met. We report on an experiment with a superconducting SRF gun, which can maintain a vacuum of nearly 10-12 torr because of cryo-pumping at the temperature of 4.2K. With conventional activation, we obtained a QE of 3% at 532 nm, with lifetime of nearly 3 days in the preparation chamber. We plan to use this cathode in a 1.3 GHz 1/2 cell SRF gun to study its performance. In addition, we studied the multipacting at the location of cathode. A new model based on the Forkker-Planck equation which can estimate the bunch length of the electron beam is discussed in this paper. Future particle accelerators such as eRHIC and ILC require high brightness, high current polarized electrons Recently, using a superlattice crystal, the maximum polarization of 95% was reached. Activation with Cs,O lowers the electron affinity and makes it energetically possible for all the electrons excited in to …

The 3rd LHC Crab Cavity workshop (LHC-CC09) took place at CERN in October 2009. It reviewed the current status and identified a clear strategy towards a future crab-cavity implementation. Following the success of crab cavities in KEK-B and the strong potential for luminosity gain and leveling, CERN will pursue crab crossing for the LHC upgrade. We present a summary and outcome of the variousworkshop sessions which have led to the LHC crab-cavity strategy, covering topics like layout, cavity design, integration, machine protection, and a potential validation test in the SPS.

Many efforts were made over the last decades to develop a better polarized electron source for the high energy physics. Several laboratories operate DC guns with the Gallium-Arsenide photo-cathode, which yield a highly polarized electron beam. However, the beam's emittance might well be improved using a Superconducting RF electron gun, which delivers beams of higher brightness than DC guns does, because the field gradient at the cathode is higher. SRF guns with metal cathodes and CsTe cathodes have been tested successfully. To produce polarized electrons, a Gallium-Arsenide photo-cathode must be used: an experiment to do so in a superconducting RF gun is under way at BNL. Since the cathode will be normal conducting, the problem about the heat load stemming from the cathode arises. We present our measurements of the electrical resistance of GaAs at cryogenic temperatures, a prediction of the heat load and the verification by measuring the quality factor of the gun with and without cathode.

During the 2009 LHC injection tests, the polarities and effects of specific quadrupole and higher-order magnetic circuits were investigated. A set of magnet circuits had been selected for detailed investigation based on a number of criteria. On or off-momentum difference trajectories launched via appropriate orbit correctors for varying strength settings of the magnet circuits under study - e.g. main, trim and skew quadrupoles; sextupole families and spool piece correctors; skew sextupoles, octupoles - were compared with predictions from various optics models. These comparisons allowed confirming or updating the relative polarity conventions used in the optics model and the accelerator control system, as well as verifying the correct powering and assignment of magnet families. Results from measurements in several LHC sectors are presented.

Today's largest systems have over 100,000 cores, with million-core systems expected over the next few years. This growing scale makes debugging the applications that run on them a daunting challenge. Few debugging tools perform well at this scale and most provide an overload of information about the entire job. Developers need tools that quickly direct them to the root cause of the problem. This paper presents AutomaDeD, a tool that identifies which tasks of a large-scale application first manifest a bug at a specific code region at a specific point during program execution. AutomaDeD creates a statistical model of the application's control-flow and timing behavior that organizes tasks into groups and identifies deviations from normal execution, thus significantly reducing debugging effort. In addition to a case study in which AutomaDeD locates a bug that occurred during development of MVAPICH, we evaluate AutomaDeD on a range of bugs injected into the NAS parallel benchmarks. Our results demonstrate that detects the time period when a bug first manifested itself with 90% accuracy for stalls and hangs and 70% accuracy for interference faults. It identifies the subset of processes first affected by the fault with 80% accuracy and 70% accuracy, respectively and the …

Forestry is one of the most important sectors in the context of climate change. It lies at the center-stage of global mitigation and adaptation efforts. Yet, it is one of the least understood sectors, especially in tropical zones, which constitute a significant portion of the global forests. Recently, there has been a growing interest in forests in addressing global climate change. The IPCC Assessment Report 4 (2007) Chapters related to forests have highlighted the limited number of studies on the impact of climate change on forests at the regional, national and sub-national level, while policy makers need information at these scales. Further, implication of projected climate change on mitigation potential of forest sector is only briefly mentioned in the IPCC report, with limited literature to support the conclusions. India is one among the top ten nations in the world in terms of forest cover. It is also sixth among the tropical countries in terms of forested area. As IPCC Assessment Report 5 work is about to be initiated soon, studies on the impact of climate change on forests as well as the mitigation potential of the forest sector, particularly at regional and national level, will be of great interest to …

Silicon is a promising anode material for Li-ion batteries in regarding of high capacity, low cost and safety, but it suffers poor cycling stability due to the pulverization induced by severe volume expansion/shrinkage (297%) during lithium insertion/extraction. In our previous investigation on aluminum nanorods anodes, it is found the selection of substrates in which Al nanorods grown plays the role in prevention of pulverization resulting in the increase of cycling life. Adapting this knowledge, we investigated the Si based nanorods anodes by tuning its composition and element distribution. Our results show that although the Si nanorods demonstrated higher initial anodic capacity of 1500 mAh/g, it diminished after 50 cycles due to morphology change and pulverization. By codepositing Cu, the Si-Cu composite nanorods demonstrated sustainable capacity of 500 mAh/g in 100 cycles attributing to its flexible and less brittle nature.

Cyanobacteria and some chemoautotrophic bacteria are able to grow in environments with limiting CO2 concentrations by employing a CO2-concentrating mechanism (CCM) that allows them to accumulate inorganic carbon in their cytoplasm to concentrations several orders of magnitude higher than that on the outside. The final step of this process takes place in polyhedral protein microcompartments known as carboxysomes, which contain the majority of the CO2-fixing enzyme, RubisCO. The efficiency of CO2 fixation by the sequestered RubisCO is enhanced by co-localization with a specialized carbonic anhydrase that catalyzes dehydration of the cytoplasmic bicarbonate and ensures saturation of RubisCO with its substrate, CO2. There are two genetically distinct carboxysome types that differ in their protein composition and in the carbonic anhydrase(s) they employ. Here we review the existing information concerning the genomics, structure and enzymology of these uniquely adapted carbonic anhydrases, which are of fundamental importance in the global carbon cycle.

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The 56MHz Superconducting RF (SRF) cavity for RHIC places high demands High Order Mode (HOM) damping, as well as requiring a high field at gap with fundamental mode frequency. The damper of 56MHz cavity is designed to extract all modes to the resistance load outside, including the fundamental mode. Therefore, the circuit must incorporate a high-pass filter to reflect back the fundamental mode into the cavity. In this paper, we show the good frequency response map obtained from our filter's design. We extract a circuit diagram from the microwave elements that simulate well the frequency spectrum of the finalized filter. We also demonstrate that the power dissipation on the filter over its frequency range is small enough for cryogenic cooling.

The Cornell Electron Storage Ring (CESR) has been reconfigured as a test accelerator (CesrTA) for a program of electron cloud (EC) research at ultra low emittance. The instrumentation in the ring has been upgraded with local diagnostics for measurement of cloud density and with improved beam diagnostics for the characterization of both the low emittance performance and the beam dynamics of high intensity bunch trains interacting with the cloud. A range of EC mitigation methods have been deployed and tested and their effectiveness is discussed. Measurements of the electron cloud's effect on the beam under a range of conditions are discussed along with the simulations being used to quantitatively understand these results.

A prototype Ampere-class superconducting energy recovery linac (ERL) is under advanced construction at BNL. The ERL facility is comprised of a five-cell SC Linac plus a half-cell SC photo-injector RF electron gun, both operating at 703.75 MHz. The facility is designed for either a high-current mode of operation up to 0.5 A at 703.75 MHz or a high-bunch-charge mode of 5 nC at 10 MHz bunch frequency. The R&D facility serves a test bed for an envisioned electron-hadron collider, eRHIC. The high-current, high-charge operating parameters make effective higher-order-mode (HOM) damping mandatory, and requires the determination of HOM tolerances for a cavity upgrade. The niobium cavity has been tested at superconducting temperatures and has provided measured quality factors (Q) for a large number of modes. These numbers were used for the estimate of the beam breakup instability (BBU). The facility will be assembled with a highly flexible lattice covering a vast operational parameter space for verification of the estimates and to serve as a test bed for the concepts directed at future projects.

The current ATF2 Ultra-Low beta proposal was designed to achieve 20nm vertical IP beam size without considering the multipolar components of the FD magnets. In this paper we describe different scenarios that avoid the detrimental effect of these multipolar errors to the beam size at the interaction point (IP). The simplest approach consists in modifying the optics, but other solutions are studied as the introduction of super-conducting wigglers to reduce the emittance or the replacement of the normal-conducting focusing quadrupole in the Final Doublet (NC-QF1FF) with a super-conducting quadrupole one (SC-QF1FF). These are fully addressed in the paper.

We report recent experimental results on linear optics measurements and corrections using ac dipole. In RHIC 2009 run, the concept of the SVD correction algorithm is tested at injection energy for both identifying the artificial gradient errors and correcting it using the trim quadrupoles. The measured phase beatings were reduced by 30% and 40% respectively for two dedicated experiments. In RHIC 2010 run, ac dipole is used to measure {beta}* and chromatic {beta} function. For the 0.65m {beta}* lattice, we observed a factor of 3 discrepancy between model and measured chromatic {beta} function in the yellow ring.

Four series of glass compositions were selected, fabricated, and characterized as part of a study to determine the impacts of the addition of Crystalline Silicotitanate (CST) and Monosodium Titanate (MST) from the Small Column Ion Exchange (SCIX) process on the Defense Waste Processing Facility (DWPF) glass waste form and the applicability of the DWPF process control models. All of the glasses studied were considerably more durable than the benchmark Environmental Assessment (EA) glass. The measured Product Consistency Test (PCT) responses were compared with the predicted values from the current DWPF durability model. One of the KT01-series and two of the KT03-series glasses had measured PCT responses that were outside the lower bound of the durability model. All of the KT04 glasses had durabilities that were predictable regardless of heat treatment or compositional view. In general, the measured viscosity values of the KT01, KT03, and KT04-series glasses are well predicted by the current DWPF viscosity model. The results of liquidus temperature (T{sub L}) measurements for the KT01-series glasses were mixed with regard to the predictability of the T{sub L} for each glass. All of the measured T{sub L} values were higher than the model predicted values, although most fell within the …

Due to their low access latency, high read speed, and power-efficient operation, flash memory storage devices are rapidly emerging as an attractive alternative to traditional magnetic storage devices. However, tests show that the most efficient indexing methods are not able to take advantage of the flash memory storage devices. In this paper, we present a set of multi-level bitmap indexes that can effectively take advantage of flash storage devices. These indexing methods use coarsely binned indexes to answer queries approximately, and then use finely binned indexes to refine the answers. Our new methods read significantly lower volumes of data at the expense of an increased disk access count, thus taking full advantage of the improved read speed and low access latency of flash devices. To demonstrate the advantage of these new indexes, we measure their performance on a number of storage systems using a standard data warehousing benchmark called the Set Query Benchmark. We observe that multi-level strategies on flash drives are up to 3 times faster than traditional indexing strategies on magnetic disk drives.

We report recent progresses on analytical studies of Coherent Electron Cooling. The phase space electron beam distribution obtained from the 1D FEL amplifier is applied to an infinite electron plasma model and the electron density evolution inside the kicker is derived. We also investigate the velocity modulation in the modulator and obtain a closed form solution for the current density evolution for infinite homogeneous electron plasma.

X-ray Optics-Free FEL Oscillator (OFFELO) has potential of becoming a choice for next generation light sources. Using electron beam for the feedback allows OFFELO to be completely tunable and to combine the peak power of high-gain SASE FELs with extremely narrow bandwidth of the oscillator. While the high-gain X-ray FELs has been studied in depth and has been successfully demonstrated, two other concepts (the transport and the feed-back) involved in OFFELO still need detail studies. In this short paper we focus on the simulation of the feedback process and the evolution of FEL spectrum in X-ray OFFELO. In our initial studies of OFFELO studied the saturation of the system and also its evolution using Genesis 2.0 code with a homemade wrapping code. While and lattice design from the modulator to the radiator, in order to minimize the feedback information loss in transporting the beam.

In support of the Large Hadron Collider (LHC) luminosity upgrade, the US LHC Accelerator Research Program (LARP) has been developing a 1-meter long, 120 mm bore Nb{sub 3}Sn IR quadrupole magnet (HQ). With a design short sample gradient of 219 T/m at 1.9 K and a peak field approaching 15 T, one of the main challenges of this magnet is to provide appropriate mechanical support to the coils. Compared to the previous LARP Technology Quadrupole and Long Quadrupole magnets, the purpose of HQ is also to demonstrate accelerator quality features such as alignment and cooling. So far, 8 HQ coils have been fabricated and 4 of them have been assembled and tested in HQ01a. This paper presents the mechanical assembly and test results of HQ01a.

Today's largest systems have over 100,000 cores, with million-core systems expected over the next few years. The large component count means that these systems fail frequently and often in very complex ways, making them difficult to use and maintain. While prior work on fault detection and diagnosis has focused on faults that significantly reduce system functionality, the wide variety of failure modes in modern systems makes them likely to fail in complex ways that impair system performance but are difficult to detect and diagnose. This paper presents AutomaDeD, a statistical tool that models the timing behavior of each application task and tracks its behavior to identify any abnormalities. If any are observed, AutomaDeD can immediately detect them and report to the system administrator the task where the problem began. This identification of the fault's initial manifestation can provide administrators with valuable insight into the fault's root causes, making it significantly easier and cheaper for them to understand and repair it. Our experimental evaluation shows that AutomaDeD detects a wide range of faults immediately after they occur 80% of the time, with a low false-positive rate. Further, it identifies weaknesses of the current approach that motivate future research.