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The Mysteries of Proanthocyanidin Transport and Polymerization (open access)

The Mysteries of Proanthocyanidin Transport and Polymerization

Article on the mysteries of proanthocyanidin transport and polymerization.
Date: June 2010
Creator: Zhao, Jian; Pang, Yongzhen & Dixon, R. A.
System: The UNT Digital Library
The BErkeley Lab Laser Accelerator (BELLA): A 10 GeV Laser Plasma Accelerator (open access)

The BErkeley Lab Laser Accelerator (BELLA): A 10 GeV Laser Plasma Accelerator

An overview is presented of the design of a 10 GeV laser plasma accelerator (LPA) that will be driven by a PW-class laser system and of the BELLA Project, which has as its primary goal to build and install the required Ti:sapphire laser system for the acceleration experiments. The basic design of the 10 GeV stage aims at operation in the quasi-linear regime, where the laser excited wakes are largely sinusoidal and offer the possibility of accelerating both electrons and positrons. Simulations show that a 10 GeV electron beam can be generated in a meter scale plasma channel guided LPA operating at a density of about 1017 cm-3 and powered by laser pulses containing 30-40 J of energy in a 50- 200 fs duration pulse, focused to a spotsize of 50-100 micron. The lay-out of the facility and laser system will be presented as well as the progress on building the facility.
Date: June 1, 2010
Creator: Leemans, W. P.; Duarte, R.; Esarey, E.; Fournier, S.; Geddes, C. G. R.; Lockhart, D. et al.
System: The UNT Digital Library
Ultrafast Diagnostics for Electron Beams from Laser Plasma Accelerators (open access)

Ultrafast Diagnostics for Electron Beams from Laser Plasma Accelerators

We present an overview of diagnostic techniques for measuring key parameters of electron bunches from Laser Plasma Accelerators (LPAs). The diagnostics presented here were chosen because they highlight the unique advantages (e.g., diverse forms of electromagnetic emission) and difficulties (e.g., shot-to-shot variability) associated with LPAs. Non destructiveness and high resolution (in space and time and energy) are key attributes that enable the formation of a comprehensive suite of simultaneous diagnostics which are necessary for the full characterization of the ultrashort, but highly-variable electron bunches from LPAs.
Date: June 1, 2010
Creator: Matlis, N. H.; Bakeman, M.; Geddes, C. G. R.; Gonsalves, T.; Lin, C.; Nakamura, K. et al.
System: The UNT Digital Library
Summary Report of Working Group 1: Laser-Plasma Acceleration (open access)

Summary Report of Working Group 1: Laser-Plasma Acceleration

Advances in and physics of the acceleration of particles using underdense plasma structures driven by lasers were the topics of presentations and discussions in Working Group 1 of the 2010 Advanced Accelerator Concepts Workshop. Such accelerators have demonstrated gradients several orders beyond conventional machines, with quasi-monoenergetic beams at MeV-GeV energies, making them attractive candidates for next generation accelerators. Workshop discussions included advances in control over injection and laser propagation to further improve beam quality and stability, detailed diagnostics and physics models of the acceleration process, radiation generation as a source and diagnostic, and technological tools and upcoming facilities to extend the reach of laser-plasma accelerators.
Date: June 1, 2010
Creator: Geddes, C.G.R.; Clayton, C.; Lu, W. & Thomas, A.G.R.
System: The UNT Digital Library
Mechanics of layered anisotropic poroelastic media with applications to effective stress for fluid permeability (open access)

Mechanics of layered anisotropic poroelastic media with applications to effective stress for fluid permeability

The mechanics of vertically layered porous media has some similarities to and some differences from the more typical layered analysis for purely elastic media. Assuming welded solid contact at the solid-solid interfaces implies the usual continuity conditions, which are continuity of the vertical (layering direction) stress components and the horizontal strain components. These conditions are valid for both elastic and poroelastic media. Differences arise through the conditions for the pore pressure and the increment of fluid content in the context of fluid-saturated porous media. The two distinct conditions most often considered between any pair of contiguous layers are: (1) an undrained fluid condition at the interface, meaning that the increment of fluid content is zero (i.e., {delta}{zeta} = 0), or (2) fluid pressure continuity at the interface, implying that the change in fluid pressure is zero across the interface (i.e., {delta}p{sub f} = 0). Depending on the types of measurements being made on the system and the pertinent boundary conditions for these measurements, either (or neither) of these two conditions might be directly pertinent. But these conditions are sufficient nevertheless to be used as thought experiments to determine the expected values of all the poroelastic coefficients. For quasi-static mechanical changes …
Date: June 1, 2010
Creator: Berryman, J. G.
System: The UNT Digital Library
In situ spectroscopic detection of SMSI effect in a Ni/CeO2 system: hydrogen-induced burial and dig out of metallic nickel (open access)

In situ spectroscopic detection of SMSI effect in a Ni/CeO2 system: hydrogen-induced burial and dig out of metallic nickel

In situ APPES technique demonstrates that the strong metal support interaction effect (SMSI) in the Ni-ceria system is associated with the decoration and burial of metallic particles by the partially reduced support, a phenomenon reversible by evacuation at high temperature of the previously absorbed hydrogen.
Date: June 29, 2010
Creator: Caballero, Alfonso; Holgado, Juan P.; Gonzalez-delaCruz, Victor M.; Habas, Susan e.; Herranz, Tirma & Salmeron, Miquel
System: The UNT Digital Library
Optical Sideband Generation: a Longitudinal Electron Beam Diagnostic Beyond the Laser Bandwidth Resolution Limit (open access)

Optical Sideband Generation: a Longitudinal Electron Beam Diagnostic Beyond the Laser Bandwidth Resolution Limit

Electro-optic sampling (EOS) is widely used as a technique to measure THz-domain electric field pulses such asthe self-fields of femtosecond electron beams. We present an EOS-based approach for single-shot spectral measurement that excels in simplicity (compatible with fiber integration) and bandwidth coverage (overcomes the laser bandwidth limitation), allowing few-fs electron beams or single-cycle THz pulses to be characterized with conventional picosecond probes. It is shown that the EOS-induced optical sidebands on the narrow-bandwidth optical probe are spectrally-shifted replicas of the THz pulse. An experimental demonstration on a 0-3 THz source is presented.
Date: June 1, 2010
Creator: Laboratory, Lawrence Berkeley National; Tilborg, J. van; Matlis, N. H.; Plateau, G. R. & Leemans, W. P.
System: The UNT Digital Library
Sources and transport systems for low energy extreme of ion implantation (open access)

Sources and transport systems for low energy extreme of ion implantation

For the past seven years a joint research and development effort focusing on the design of steady state, intense ion sources has been in progress with the ultimate goal being to meet the two, energy extreme range needs of mega-electron-volt and 100's of electron-volt ion implanters. However, since the last Fortier is low energy ion implantation, focus of the endeavor has shifted to low energy ion implantation. For boron cluster source development, we started with molecular ions of decaborane (B{sub 10}H{sub 14}), octadecaborane (B{sub 18}H{sub 22}), and presently our focus is on carborane (C{sub 2}B{sub 10}H{sub 12}) ions developing methods for mitigating graphite deposition. Simultaneously, we are developing a pure boron ion source (without a working gas) that can form the basis for a novel, more efficient, plasma immersion source. Our Calutron-Berna ion source was converted into a universal source capable of switching between generating molecular phosphorous P{sub 4}{sup +}, high charge state ions, as well as other types of ions. Additionally, we have developed transport systems capable of transporting a very large variety of ion species, and simulations of a novel gasless/plasmaless ion beam deceleration method were also performed.
Date: June 6, 2010
Creator: Hershcovitch, A.; Batalin, V. A.; Bugaev, A. S.; Gushenets, V. I.; Alexeyenko, O.; Gurkova, E. et al.
System: The UNT Digital Library
Speciation of Heptavalent Technetium in Sulfuric Acid: Structural and Spectroscopic Studies. (open access)

Speciation of Heptavalent Technetium in Sulfuric Acid: Structural and Spectroscopic Studies.

The speciation of Tc(VII) in 12 M sulfuric acid was studied by NMR, UV-visible and XAFS spectroscopy, experimental results were supported by DFT calculation and were in agreement with the formation of TcO{sub 3}OH(H{sub 2}O){sub 2}. In summary, the speciation of heptvalent technetium has been investigated in sulfuric acid. In 12 M H{sub 2}SO{sub 4}, a yellow solution is observed, and its {sup 99}Tc NMR spectrum is consistent with a heptavalent complex. The yellow solution was further characterized by EXAFS spectroscopy, and results are consistent with the formation of TcO{sub 3}(OH)(H{sub 2}O){sub 2}. No technetium heptoxide or sulfato- complexes were detected in these conditions. The molecular structure of TcO{sub 3}(OH)(H{sub 2}O){sub 2} has been optimized by DFT techniques, and the structural parameters are well in accordance with those found by XAFS spectroscopy. The experimental electronic spectra exhibit ligand-to-metal charge transfer transitions that have been assigned using TDDFT methods. Calculations demonstrate the theoretical electronic spectrum of TcO{sub 3}(OH)(H{sub 2}O){sub 2} to be in very good agreement with the experimental one. Recent experiments in 12 M H{sub 2}SO{sub 4} show the yellow solution to be very reactive in presence of reducing agents presumably forming low valent Tc species. Current spectroscopic works focus …
Date: June 10, 2010
Creator: Poineau, Frederic; Weck, Philippe F.; German, Konstantin; Maruk, Alesya; Kirakosyan, Gayane; Lukens, Wayne et al.
System: The UNT Digital Library
Nucleon Magnetic Moments and Electric Polarizabilities (open access)

Nucleon Magnetic Moments and Electric Polarizabilities

Electromagnetic properties of the nucleon are explored with lattice QCD using a novel technique. Focusing on background electric fields, we show how the electric polarizability can be extracted from nucleon correlation functions. A crucial step concerns addressing contributions from the magnetic moment, which affects the relativistic propagation of nucleons in electric fields. By properly handing these contributions, we can determine both magnetic moments and electric po larizabilities. Lattice results from anisotropic clover lattices are presented. Our method is not limited to the neutron; we show results for the proton as well.
Date: June 1, 2010
Creator: Detmold, W. & Walker-Loud, A.
System: The UNT Digital Library
Structural and electrochemical Investigation of Li(Ni0.4Co0.2-yAlyMn0.4)O2 Cathode Material (open access)

Structural and electrochemical Investigation of Li(Ni0.4Co0.2-yAlyMn0.4)O2 Cathode Material

Li(Ni{sub 0.4}Co{sub 0.15}Al{sub 0.05}Mn{sub 0.4})O{sub 2} was investigated to understand the effect of replacement of the cobalt by aluminum on the structural and electrochemical properties. In situ X-ray absorption spectroscopy (XAS) was performed, utilizing a novel in situ electrochemical cell, specifically designed for long-term X-ray experiments. The cell was cycled at a moderate rate through a typical Li-ion battery operating voltage range. (1.0-4.7 V) XAS measurements were performed at different states of charge (SOC) during cycling, at the Ni, Co, and the Mn edges, revealing details about the response of the cathode to Li insertion and extraction processes. The extended X-ray absorption fine structure (EXAFS) region of the spectra revealed the changes of bond distance and coordination number of Ni, Co, and Mn absorbers as a function of the SOC of the material. The oxidation states of the transition metals in the system are Ni{sup 2+}, Co{sup 3+}, and Mn{sup 4+} in the as-made material (fully discharged), while during charging the Ni{sup 2+} is oxidized to Ni{sup 4+} through an intermediate stage of Ni{sup 3+}, Co{sup 3+} is oxidized toward Co{sup 4+}, and Mn was found to be electrochemically inactive and remained as Mn{sup 4+}. The EXAFS results during cycling …
Date: June 14, 2010
Creator: Rumble, C.; Conry, T.E.; Doeff, Marca; Cairns, Elton J.; Penner-Hahn, James E. & Deb, Aniruddha
System: The UNT Digital Library
Leading order hadronic contribution to g-2 from twisted mass QCD (open access)

Leading order hadronic contribution to g-2 from twisted mass QCD

We calculate the leading order hadronic contribution to the muon anomalous magnetic moment using twisted mass lattice QCD. The pion masses range from 330 MeV to 650 MeV. We use two lattice spacings, a=0.079 fm and 0.063 fm, to study lattice artifacts. Finite-size effects are studied for two values of the pion mass, and we calculate the disconnected contributions for four ensembles. Particular attention is paid to the dominant contributions of the vector mesons, both phenomenologically and from our lattice calculation.
Date: June 1, 2010
Creator: Dru B Renner, Xu Feng, Karl Jansen, Marcus Petschlies
System: The UNT Digital Library
2010 INORGANIC CHEMISTRY GORDON RESEARCH CONFERENCE JUNE 20 - 25, 2010 (open access)

2010 INORGANIC CHEMISTRY GORDON RESEARCH CONFERENCE JUNE 20 - 25, 2010

The Inorganic Chemistry GRC is one of the longest-standing of the GRCs, originating in 1951. Over the years, this conference has played a role in spawning many other GRCs in specialized fields, due to the involvement of elements from most of the periodic table. These include coordination, organometallic, main group, f-element, and solid state chemistries; materials science, catalysis, computational chemistry, nanotechnology, bioinorganic, environmental, and biomedical sciences just to name a few. The 2010 Inorganic Chemistry GRC will continue this tradition, where scientists at all levels from academic, industrial, and national laboratories meet to define the important problems in the field and to highlight emerging opportunities through exchange of ideas and discussion of unpublished results. Invited speakers will present on a wide variety of topics, giving attendees a look at areas both inside and outside of their specialized areas of interest. In addition to invited speakers, the poster sessions at GRCs are a key feature of the conference. All conferees at the Inorganic Chemistry GRC are invited to present a poster on their work, and here the informal setting promotes the free exchange of ideas and fosters new relationships. As in previous years, we will offer poster presenters the opportunity to …
Date: June 25, 2010
Creator: LOCKEMEYER, JOHN
System: The UNT Digital Library
Laser-PlasmaWakefield Acceleration with Higher Order Laser Modes (open access)

Laser-PlasmaWakefield Acceleration with Higher Order Laser Modes

Laser-plasma collider designs point to staging of multiple accelerator stages at the 10 GeV level, which are to be developed on the upcoming BELLA laser, while Thomson Gamma source designs use GeV stages, both requiring efficiency and low emittance. Design and scaling of stages operating in the quasi-linear regime to address these needs are presented using simulations in the VORPAL framework. In addition to allowing symmetric acceleration of electrons and positrons, which is important for colliders, this regime has the property that the plasma wakefield is proportional to the transverse gradient of the laser intensity profile. We demonstrate use of higher order laser modes to tailor the laser pulse and hence the transverse focusing forces in the plasma. In particular, we show that by using higher order laser modes, we can reduce the focusing fields and hence increase the matched electron beam radius, which is important to increased charge and efficiency, while keeping the low bunch emittance required for applications.
Date: June 1, 2010
Creator: Geddes, C. G. R.; Cormier-Michel, E.; Esarey, E.; Schroeder, C. B.; Mullowney, P.; Paul, K. et al.
System: The UNT Digital Library
Optics, mask and resist implications on contact CDU (open access)

Optics, mask and resist implications on contact CDU

Mask and condenser roughness plays important in contact CDU. Resist blur drives both dose requirements and mask specs. Correlation methods can be used to measure mask contributions to CDU.
Date: June 1, 2010
Creator: Naulleau, Patrick
System: The UNT Digital Library
Strongly Interacting Matter Matter at Very High Energy Density: 3 Lectures in Zakopane (open access)

Strongly Interacting Matter Matter at Very High Energy Density: 3 Lectures in Zakopane

These lectures concern the properties of strongly interacting matter at very high energy density. I begin with the Color Glass Condensate and the Glasma, matter that controls the earliest times in hadronic collisions. I then describe the Quark Gluon Plasma, matter produced from the thermalized remnants of the Glasma. Finally, I describe high density baryonic matter, in particular Quarkyonic matter. The discussion will be intuitive and based on simple structural aspects of QCD. There will be some discussion of experimental tests of these ideas.
Date: June 9, 2010
Creator: McLerran, L.
System: The UNT Digital Library
How Many Performance Shaping Factors are Necessary for Human Reliability Analysis? (open access)

How Many Performance Shaping Factors are Necessary for Human Reliability Analysis?

It has been argued that human reliability analysis (HRA) has expended considerable energy on creating detailed representations of human performance through an increasingly long list of performance shaping factors (PSFs). It is not clear, however, to what extent this refinement and expansion of PSFs has enhanced the quality of HRA. Indeed, there is considerable range in the number of PSFs provided by individual HRA methods, ranging from single factor models such as time-reliability curves, up to 50 or more PSFs in some current HRA models. The US Nuclear Regulatory Commission advocates 15 PSFs in its HRA Good Practices (NUREG-1792), while its SPAR-H method (NUREG/CR-6883) espouses the use of eight PSFs and its ATHEANA method (NUREG-1624) features an open-ended number of PSFs. The apparent differences in the optimal number of PSFs can be explained in terms of the diverse functions of PSFs in HRA. The purpose of this paper is to explore the role of PSFs across different stages of HRA, including identification of potential human errors, modeling of these errors into an overall probabilistic risk assessment, quantifying errors, and preventing errors.
Date: June 1, 2010
Creator: Boring, Ronald L.
System: The UNT Digital Library
Design Considerations for Plasma Accelerators Driven by Lasers or Particle Beams (open access)

Design Considerations for Plasma Accelerators Driven by Lasers or Particle Beams

Plasma accelerators may be driven by the ponderomotive force of an intense laser or the space-charge force of a charged particle beam. The implications for accelerator design and the different physical mechanisms of laser-driven and beam-driven plasma acceleration are discussed. Driver propagation is examined, as well as the effects of the excited plasma wave phase velocity. The driver coupling to subsequent plasma accelerator stages for high-energy physics applications is addressed.
Date: June 1, 2010
Creator: Schroeder, C. B.; Esarey, E.; Benedetti, C.; Toth, Cs.; Geddes, C. G. R. & Leemans, W.P.
System: The UNT Digital Library
Tomographic Imaging of Water Injection and Withdrawal in PEMFC Gas Diffusion Layers (open access)

Tomographic Imaging of Water Injection and Withdrawal in PEMFC Gas Diffusion Layers

X-ray computed tomography was used to visualize the water configurations inside gas diffusion layers for various applied capillary pressures, corresponding to both water invasion and withdrawal. A specialized sample holder was developed to allow capillary pressure control on the small-scale samples required. Tests were performed on GDL specimens with and without hydrophobic treatments.
Date: June 25, 2010
Creator: McGill University
System: The UNT Digital Library
Heterogeneous nucleation of ice on anthropogenic organic particles collected in Mexico City (open access)

Heterogeneous nucleation of ice on anthropogenic organic particles collected in Mexico City

This study reports on heterogeneous ice nucleation activity of predominantly organic (or coated with organic material) anthropogenic particles sampled within and around the polluted environment of Mexico City. The onset of heterogeneous ice nucleation was observed as a function of particle temperature (Tp), relative humidity (RH), nucleation mode, and particle chemical composition which is influenced by photochemical atmospheric aging. Particle analyses included computer controlled scanning electron microscopy with energy dispersive analysis of X-rays (CCSEM/EDX) and scanning transmission X-ray microscopy with near edge X-ray absorption fine structure spectroscopy (STXM/NEXAFS). In contrast to most laboratory studies employing proxies of organic aerosol, we show that anthropogenic organic particles collected in Mexico City can potentially induce ice nucleation at experimental conditions relevant to cirrus formation. The results suggest a new precedent for the potential impact of organic particles on ice cloud formation and climate.
Date: June 20, 2010
Creator: Knopf, D. A.; Wang, B.; Laskin, A.; Moffet, R. C. & Gilles, M. K.
System: The UNT Digital Library
Probing Ferroelectricity in PbZr0.2Ti0.8O3 with Polarized Soft X-rays (open access)

Probing Ferroelectricity in PbZr0.2Ti0.8O3 with Polarized Soft X-rays

The reduction in symmetry associated with the onset of ferroelectric order in PbZr{sub 0.2}Ti{sub 0.8}O{sub 3} (PZT) thin films leads to a pronounced difference at the Ti L{sub 3,2} absorption edges between spectra measured with the x-ray linear polarization perpendicular and parallel to the ferroelectric polarization. We introduce a general method to analyze the observed difference spectra using atomic multiplet calculations. Moreover, we find experimental evidence for structural changes in PZT induced by the reversal of the ferroelectric polarization.
Date: June 7, 2010
Creator: Arenholz, E.; van der Laan, G.; Fraile-Rodriguez, A.; Yu, P.; He, Q. & Ramesh, R.
System: The UNT Digital Library
Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation (open access)

Carboxysomal carbonic anhydrases: Structure and role in microbial CO2 fixation

Cyanobacteria and some chemoautotrophic bacteria are able to grow in environments with limiting CO2 concentrations by employing a CO2-concentrating mechanism (CCM) that allows them to accumulate inorganic carbon in their cytoplasm to concentrations several orders of magnitude higher than that on the outside. The final step of this process takes place in polyhedral protein microcompartments known as carboxysomes, which contain the majority of the CO2-fixing enzyme, RubisCO. The efficiency of CO2 fixation by the sequestered RubisCO is enhanced by co-localization with a specialized carbonic anhydrase that catalyzes dehydration of the cytoplasmic bicarbonate and ensures saturation of RubisCO with its substrate, CO2. There are two genetically distinct carboxysome types that differ in their protein composition and in the carbonic anhydrase(s) they employ. Here we review the existing information concerning the genomics, structure and enzymology of these uniquely adapted carbonic anhydrases, which are of fundamental importance in the global carbon cycle.
Date: June 23, 2010
Creator: Cannon, Gordon C.; Heinhorst, Sabine & Kerfeld, Cheryl A.
System: The UNT Digital Library
Subcellular localization of proteins in the anaerobic sulfate reducer Desulfovibrio vulgaris via SNAP-tag labeling and photoconversion (open access)

Subcellular localization of proteins in the anaerobic sulfate reducer Desulfovibrio vulgaris via SNAP-tag labeling and photoconversion

Systems Biology studies the temporal and spatial 3D distribution of macromolecular complexes with the aim that such knowledge will allow more accurate modeling of biological function and will allow mathematical prediction of cellular behavior. However, in order to accomplish accurate modeling precise knowledge of spatial 3D organization and distribution inside cells is necessary. And while a number of macromolecular complexes may be identified by its 3D structure and molecular characteristics alone, the overwhelming number of proteins will need to be localized using a reporter tag. GFP and its derivatives (XFPs) have been traditionally employed for subcelllar localization using photoconversion approaches, but this approach cannot be taken for obligate anaerobic bacteria, where the intolerance towards oxygen prevents XFP approaches. As part of the GTL-funded PCAP project (now ENIGMA) genetic tools have been developed for the anaerobe sulfate reducer Desulfovibrio vulgaris that allow the high-throughput generation of tagged-protein mutant strains, with a focus on the commercially available SNAP-tag cell system (New England Biolabs, Ipswich, MA), which is based on a modified O6-alkylguanine-DNA alkyltransferase (AGT) tag, that has a dead-end reaction with a modified O6-benzylguanine (BG) derivative and has been shown to function under anaerobic conditions. After initial challenges with respect to variability, …
Date: June 1, 2010
Creator: Gorur, A.; Leung, C. M.; Jorgens, D.; Tauscher, A.; Remis, J. P.; Ball, D. A. et al.
System: The UNT Digital Library
Nucleon matrix elements with Nf=2+1+1 maximally twisted fermions (open access)

Nucleon matrix elements with Nf=2+1+1 maximally twisted fermions

We present the first lattice calculation of nucleon matrix elements using four dynamical flavors. We use the Nf=2+1+1 maximally twisted mass formulation. The renormalization is performed non-perturbatively in the RI'-MOM scheme and results are given for the vector and axial vector operators with up to one-derivative. Our calculation of the average momentum of the unpolarized non-singlet parton distribution is presented and compared to our previous results obtained from the Nf=2 case.
Date: June 1, 2010
Creator: Simon Dinter, Constantia Alexandrou, Martha Constantinou, Vincent Drach, Karl Jansen, Dru Renner
System: The UNT Digital Library