Electron cooling was proposed to increase luminosity of the RHIC collider for heavy ion beam energies below 10 GeV/nucleon. Providing collisions at such energies, termed RHIC 'low-energy' operation, will help to answer one of the key questions in the field of QCD about existence and location of critical point on the QCD phase diagram. The electron cooling system should deliver electron beam of required good quality over energies of 0.9-5 MeV. Several approaches to provide such cooling were considered. The baseline approach was chosen and design work started. Here we describe the main features of the cooling system and its expected performance. We have started design work on a low-energy RHIC electron cooler which will operate with kinetic electron energy range 0.86-2.8 (4.9) MeV. Several approaches to an electron cooling system in this energy range are being investigated. At present, our preferred scheme is to transfer the Fermilab Pelletron to BNL after Tevatron shutdown, and to use it for DC non-magnetized cooling in RHIC. Such electron cooling system can significantly increase RHIC luminosities at low-energy operation.

The barrier bucket RF system is successfully used on Recycler storage ring at Fermilab. The special program code ESME was used for numerical simulation of longitudinal phase space manipulations. This program helps optimizing the various regimes of operation in the Recycler and increasing the luminosity in the colliding experiments. Electron and stochastic cooling increases the phase space density in all degrees of freedom. In the case of a small phase space volume the intrabeam scattering introduces coupling between the transverse and longitudinal temperatures of the antiproton beam. For numerical simulations of the cooling processes at the Recycler, a new model of the barrier buckets was implemented in the BETACOOL code. The comparison between ESME and BETACOOL codes for a stationary and moving barrier buckets is presented. This article also includes an application of the barrier bucket numerical model for simulation of the luminosity distribution for RHIC colliding experiments. These simulations take into account the specific longitudinal distribution of the bunch and the vertex size of the detector.

The on-line models for Relativistic Ion Collider (RHIC) and the RHIC pre-injectors (the AGS and the AGS Booster) can be thought of as containing our best collective knowledge of these accelerators. As we improve these on-line models we are building the framework to have a sophisticated model-based controls system. Currently the RHIC on-line model is an integral part of the controls system, providing the interface for tune control, chromaticity control, and non-linear chromaticity control. What we discuss in this paper is our vision of the future of the on-line model environment for RHIC and the RHIC preinjectors. Although these on-line models are primarily used as Courant-Snyder parameter calculators using live machine settings, we envision expanding these environments to encompass many other problem domains.

This conference brings together scientists interested in a range of basic phenomena linked to the ejection and scattering of electrons from atoms, molecules, clusters, liquids and solids by absorption of light. Photoionization, a highly sensitive probe of both structure and dynamics, can range from perturbative single-photon processes to strong-field highly non-perturbative interactions. It is responsible for the formation and destruction of molecules in astrophysical and plasma environments and successfully used in advanced analytical techniques. Positive ions, which can be produced and studied most effectively using photoionization, are the major components of all plasmas, vital constituents of flames and important intermediates in many chemical reactions. Negative ions are significant as transient species and, when photodetached, the corresponding neutral species often undergoes remarkable, otherwise non-observable, dynamics. The scope of the meeting spans from novel observations in atomic and molecular physics, such as Coulomb Crystals, highly excited states and cold Rydberg plasmas, to novel energy resolved or ultrafast time-resolved experiments, photoionization in strong laser fields, theoretical method development for electron scattering, photoionization and photodetachment and more complex phenomena such as charge transfer and DNA and protein conductivity, important for biological and analytical applications.

Gene families are growing rapidly, but standard methods for inferring phylogenies do not scale to alignments with over 10,000 sequences. We present FastTree, a method for constructing large phylogenies and for estimating their reliability. Instead of storing a distance matrix, FastTree stores sequence profiles of internal nodes in the tree. FastTree uses these profiles to implement neighbor-joining and uses heuristics to quickly identify candidate joins. FastTree then uses nearest-neighbor interchanges to reduce the length of the tree. For an alignment with N sequences, L sites, and a different characters, a distance matrix requires O(N^2) space and O(N^2 L) time, but FastTree requires just O( NLa + N sqrt(N) ) memory and O( N sqrt(N) log(N) L a ) time. To estimate the tree's reliability, FastTree uses local bootstrapping, which gives another 100-fold speedup over a distance matrix. For example, FastTree computed a tree and support values for 158,022 distinct 16S ribosomal RNAs in 17 hours and 2.4 gigabytes of memory. Just computing pairwise Jukes-Cantor distances and storing them, without inferring a tree or bootstrapping, would require 17 hours and 50 gigabytes of memory. In simulations, FastTree was slightly more accurate than neighbor joining, BIONJ, or FastME; on genuine alignments, FastTree's …

We provide an introduction to recent lattice formulations of supersymmetric theories which are invariant under one or more real supersymmetries at nonzero lattice spacing. These include the especially interesting case of N = 4 SYM in four dimensions. We discuss approaches based both on twisted supersymmetry and orbifold-deconstruction techniques and show their equivalence in the case of gauge theories. The presence of an exact supersymmetry reduces and in some cases eliminates the need for fine tuning to achieve a continuum limit invariant under the full supersymmetry of the target theory. We discuss open problems.

We point out how, in certain models of New Physics, the same combination of couplings occurs in the amplitudes for both D{sup 0}-{bar D}{sup 0} mixing and the rare decays D{sup 0} {yields} {ell}{sup +}{ell}{sup -}. If the New Physics dominates and is responsible for the observed mixing, then a very simple correlation exists between the magnitudes of each; in fact the rates for the decay D{sup 0} {yields} {ell}{sup +}{ell}{sup -} are completely fixed by the mixing. Observation of D{sup 0} {yields} {ell}{sup +}{ell}{sup -} in excess of the Standard Model prediction could identify New Physics contributions to D{sup 0}-{bar D}{sup 0} mixing.

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A summary of progress at Lawrence Berkeley National Laboratory is given on: (1) experiments on down-ramp injection; (2) experiments on acceleration in capillary discharge plasma channels; and (3) simulations of a staged laser wakefield accelerator (LWFA). Control of trapping in a LWFA using plasma density down-ramps produced electron bunches with absolute longitudinal and transverse momentum spreads more than ten times lower than in previous experiments (0.17 and 0.02 MeV Ic FWHM, respectively) and with central momenta of 0.76 +- 0.02 MeV Ic, stable over a week of operation. Experiments were also carried out using a 40 TW laser interacting with a hydrogen-filled capillary discharge waveguide. For a 15 mm long, 200 mu m diameter capillary, quasi-monoenergetic bunches up to 300 MeV were observed. By detuning discharge delay from optimum guiding performance, self-trapping was found to be stabilized. For a 33 mm long, 300 mu m capillary, a parameter regime with high energy bunches, up to 1 Ge V, was found. In this regime, peak electron energy was correlated with the amount of trapped charge. Simulations show that bunches produced on a down-ramn and iniected into a channel-guided LWFA can produce stable beams with 0.2 MeV Ic-class momentum spread at high …

We have studied the oxidation of carbon monoxide over a lanthanum substituted perovskite (La0.5Sr0.5CoO3-d) catalyst prepared by spray pyrolysis. Under the assumption of a first-order kinetics mechanism for CO, it has been found that the activation energy barrier of the reaction changes from 80 to 40 kJ mol-1 at a threshold temperature of ca. 320 oC. In situ XPS near-ambient pressure ( 0.2 torr) shows that the gas phase oxygen concentration over the sample decreases sharply at ca. 300 oC. These two observations suggest that the oxidation of CO undergoes a change of mechanism at temperatures higher than 300 oC.

We propose measurements of the deeply virtual Compton amplitude (DVCS) {gamma}* {yields} H{bar H}{gamma} in the timelike t = (p{sub H} + p{sub {bar H}}){sup 2} > 0 kinematic domain which is accessible at electron-positron colliders via the radiative annihilation process e{sup +}e{sup -} {yields} H{bar H}{gamma}. These processes allow the measurement of timelike deeply virtual Compton scattering for a variety of H{bar H} hadron pairs such as {pi}{sup +}{pi}{sup -}, K{sup +}K{sup -}, and D{bar D} as well as p{bar p}. As in the conventional spacelike DVCS, there are interfering coherent amplitudes contributing to the timelike processes involving C = - form factors. The interference between the amplitudes measures the phase of the C = + timelike DVCS amplitude relative to the phase of the timelike form factors and can be isolated by considering the forward-backward e{sup +} {leftrightarrow} e{sup -} asymmetry. The J = 0 fixed pole contribution which arises from the local coupling of the two photons to the quark current plays a special role. As an example we present a simple model.

The center-stabilized multiflavor QCD* theories formulated on R{sub 3} x S{sub 1} exhibit both Abelian and non-Abelian confinement as a function of the S{sub 1} radius, similar to the Seiberg-Witten theory as a function of the mass deformation parameter. For sufficiently small number of flavors and small r(S{sub 1}), we show occurrence of a mass gap in gauge fluctuations, and linear confinement. This is a regime of confinement without continuous chiral symmetry breaking ({chi}SB). Unlike one-flavor theories where there is no phase transition in r(S{sub 1}), the multiflavor theories possess a single phase transition associated with breaking of the continuous {chi}S. We conjecture that the scale of the {chi}SB is parametrically tied up with the scale of Abelian to non-Abelian confinement transition.

Commodity clusters augmented with application accelerators are evolving as competitive high performance computing systems. The Graphical Processing Unit (GPU) with a very high arithmetic density and performance per price ratio is a good platform for the scientific application acceleration. In addition to the interconnect bottlenecks among the cluster compute nodes, the cost of memory copies between the host and the GPU device have to be carefully amortized to improve the overall efficiency of the application. Scientific applications also rely on efficient implementation of the BAsic Linear Algebra Subroutines (BLAS), among which the General Matrix Multiply (GEMM) is considered as the workhorse subroutine. In this paper, they study the performance of the memory copies and GEMM subroutines that are critical to port the computational chemistry algorithms to the GPU clusters. To that end, a benchmark based on the NetPIPE framework is developed to evaluate the latency and bandwidth of the memory copies between the host and the GPU device. The performance of the single and double precision GEMM subroutines from the NVIDIA CUBLAS 2.0 library are studied. The results have been compared with that of the BLAS routines from the Intel Math Kernel Library (MKL) to understand the computational trade-offs. The …

In addition to the red terra sigillata production, the largest Gallic workshop (La Graufesenque) made a special type of terra sigillata, called 'marbled' by the archaeologists. Produced exclusively on this site, this pottery is characterized by a surface finish made of a mixture of yellow and red slips. Because the two slips are intimately mixed, it is difficult to obtain the precise composition of one of the two constituents without contamination by the other. In order to obtain very precise correlation at the appropriate scale between the color aspect and the element and mineralogical phase distributions in the slip, combined electron microprobe, x-ray micro spectroscopies and micro diffraction on cross sectional samples were performed. The aim is to discover how potters were able to produce this unique type of terra sigillata and especially this slip showing an intense yellow color. Results show that the yellow component of marbled sigillata was made from a titanium-rich clay preparation. The color is related to the formation of a pseudobrookite (TiFe2O5) phase in the yellow part of the slip, the main characteristics of that structure being considered nowadays as essential for the fabrication of stable yellow ceramic pigments. Its physical properties such as high …

The drive towards sustainable, low-energy buildings has increased the need for simple, yet accurate methods to evaluate whether a daylit building meets minimum standards for energy and human comfort performance. Current metrics do not account for the temporal and spatial aspects of daylight, nor of occupants comfort or interventions. This paper reviews the historical basis of current compliance methods for achieving daylit buildings, proposes a technical basis for development of better metrics, and provides two case study examples to stimulate dialogue on how metrics can be applied in a practical, real-world context.

The protonation reactions of oxalate (ox) and the complex formation of uranium(VI) with oxalate in 1.05 mol kg{sup -1} NaClO{sub 4} were studied at variable temperatures (10-70 C). Three U(VI)/ox complexes (UO{sub 2}ox{sub j}{sup (2-2j){sup +}} with j = 1, 2, 3) were identified in this temperature range. The formation constants and the molar enthalpies of complexation were determined by spectrophotometry and calorimetry. The complexation of uranium(VI) with oxalate ion is exothermic at lower temperatures (10-40 C) and becomes endothermic at higher temperatures (55-70 C). In spite of this, the free energy of complexation becomes more negative at higher temperatures due to increasingly more positive entropy of complexation that exceeds the increase of the enthalpy of complexation. The thermodynamic parameters at different temperatures, in conjunction with the literature data for other dicarboxylic acids, provide insight into the relative strength of U(VI) complexes with a series of dicarboxylic acids (oxalic, malonic and oxydiacetic) and rationalization for the highest stability of U(VI)/oxalate complexes in the series. The data reported in this study are of importance in predicting the migration of uranium(VI) in geological environments in the case of failure of the engineering barriers which protect waste repositories.

Sulfate attack and the accompanying crystallization of fibrous ettringite [Ca{sub 6}Al{sub 2}(OH){sub 12}(SO{sub 4}){sub 3} {center_dot} 26H{sub 2}O] cause cracking and loss of strength in concrete structures. Hard synchrotron X-ray microdiffraction is used to quantify the orientation distribution of ettringite crystals. Diffraction images are analyzed using the Rietveld method to obtain information on textures. The analysis reveals that the c axes of the trigonal crystallites are preferentially oriented perpendicular to the fracture surfaces. By averaging single-crystal elastic properties over the orientation distribution, it is possible to estimate the elastic anisotropy of ettringite aggregates.

Cancer is a heterogeneous disease resulting from the accumulation of genetic defects that negatively impact control of cell division, motility, adhesion and apoptosis. Deregulation in signaling along the EGFR-MAPK pathway is common in breast cancer, though the manner in which deregulation occurs varies between both individuals and cancer subtypes. We were interested in identifying subnetworks within the EGFR-MAPK pathway that are similarly deregulated across subsets of breast cancers. To that end, we mapped genomic, transcriptional and proteomic profiles for 30 breast cancer cell lines onto a curated Pathway Logic symbolic systems model of EGFR-MEK signaling. This model was comprised of 539 molecular states and 396 rules governing signaling between active states. We analyzed these models and identified several subtype specific subnetworks, including one that suggested PAK1 is particularly important in regulating the MAPK cascade when it is over-expressed. We hypothesized that PAK1 overexpressing cell lines would have increased sensitivity to MEK inhibitors. We tested this experimentally by measuring quantitative responses of 20 breast cancer cell lines to three MEK inhibitors. We found that PAK1 over-expressing luminal breast cancer cell lines are significantly more sensitive to MEK inhibition as compared to those that express PAK1 at low levels. This indicates that …

Special Technologies Laboratory (STL) is developing handheld chemical, biological, and explosive (CBE) detection systems and sensor motes for wireless networked field operations. The CBE sensors are capable of detecting and identifying multiple targeted toxic industrial chemicals (TICs) and high-explosive vapor components. The CBE devices are based on differential mobility spectrometry (DMS) coupled with fast gas chromatography (GC) or mass spectrometry. The systems all include the concepts of: 1. Direct air/particulate “smart” sampling 2. Selective, continuous real-time (~1 sec) alert monitoring using DMS 3. Highly selective, rapid dual technology separation/verification analysis The biosensor technology is based on Raman aerosol particle flow cytometry for target detection and identification. Monitoring and identifying trace level chemical vapors directly from ambient air will allow First Responders to quickly adapt situational response strategies and personal protective equipment needs to the specific response scenario being encountered. First Responders require great confidence in the measurements and ability of a given system to detect CBE below threshold levels without interferences. The concept of determining the background matrix in near real-time to allow subsequent automated field-programmable method selection and cueing of high-value assets in a wide range of environs will be presented. This provides CBE information for decisions prior to …

The FLASH L-band (1.3 GHz) superconducting accelerator facility at DESY has a Low Level RF (LLRF) system that is similar to that envisioned for ILC. This system has extensive monitoring capability and was used to gather performance data relevant to ILC. In particular, waveform data were recorded with beam off for three, 8-cavity cryomodules to evaluate the input rf stability, perturbations to the SC cavity frequencies and the rf overhead required to achieve constant gradient during the 800-s pulses. In this paper, we discuss the measurements and data analysis procedures and present key findings on the pulse-to-pulse input rf and cavity field stability.

In summary, SPM data has shown that (1) Mg inhibits growth on all steps but relatively high Mg/Ca ratios are needed. Extracting the mechanism of interaction requires more modeling of the kinetic data, but step morphology is consistent with incorporation. (2) Citrate has several effects depending on the citrate/Ca ratio. At the lowest concentrations, citrate increases the step free energy without altering the step kinetics; at higher concentrations, the polar step is slowed. (3) Oxalate also slows the polar step but additionally stabilizes a new facet, with a [100]{sub Cc} step. (4) Etidronate has the greatest kinetic impact of the molecules studied. At 7{micro}M concentrations, the polar step slows by 60% and a new polar step appears. However, at the same time the [10-1]{sub Cc} increases by 67%. It should be noted that all of these molecules complex calcium and can effect kinetics by altering the solution supersaturation or the Ca to HPO{sub 4}{sup 2-} ratio. For the SPM data shown, this effect was corrected for to distinguish the effect of the molecule at the crystal surface from the effect of the molecule on the solution speciation. The goal of this paper is to draw connections between fundamental studies of …

In this paper, the corner rounding bias of a commercially available extreme ultraviolet photoresist is monitored as molecular weight, photoacid generator (PAG) size, and development time are varied. These experiments show that PAG size influences corner biasing while molecular weight and development time do not. Large PAGs are shown to exhibit less corner biasing, and in some cases, lower corner rounding, than small PAGs. In addition, heavier resist polymers are shown to exhibit less corner rounding than lighter ones.

As multiprocessors scale to unprecedented numbers of cores in order to sustain performance growth, it is vital that these gains are not nullified by high energy consumption from inter-core communication. With recent advances in 3D Integration CMOS technology, the possibility for realizing hybrid photonic-electronic networks-on-chip warrants investigating real application traces on functionally comparable photonic and electronic network designs. We present a comparative analysis using both synthetic benchmarks as well as real applications, run through detailed cycle accurate models implemented under the OMNeT++ discrete event simulation environment. Results show that when utilizing standard process-to-processor mapping methods, this hybrid network can achieve 75X improvement in energy efficiency for synthetic benchmarks and up to 37X improvement for real scientific applications, defined as network performance per energy spent, over an electronic mesh for large messages across a variety of communication patterns.

Article on 7-chloro-2-methylamino-5-phenyl-3H-1, 4-benzodiazepine-4-oxide, 7-chloro-1, 3-dihydro-1-methyl-5-phenyl-2H-1, 4-benzodiazepin-2-one, and 7-chloro-5-(2-chlorophenyl)-3-hydroxy-1, 3-dihydro-1, 4-benzodiazepin-2-one in (propane-1, 2-diol + water) at a temperature of 303.2 K.