Self-assembly is a powerful tool in forming structures with nanoscale dimensions. Self-assembly of macromolecules provides an efficient and rapid pathway for the formation of structures from the nanometer to micrometer range that are difficult, if not impossible to obtain by conventional lithographic techniques [1]. Depending on the morphologies obtained (size, shape, periodicity, etc.) these self-assembled systems have already been applied or shown to be useful for a number of applications in nanotechnology [2], biomineralization [3, 4], drug delivery [5, 6] and gene therapy [7]. In this respect, amphiphilic block copolymers that self-organize in solution have been found to be very versatile [1]. In recent years, polymer-micellar systems have been designed that are adaptable to their environment and able to respond in a controlled manner to external stimuli. In short, synthesis of 'nanoscale objects' that exhibit 'stimulus-responsive' properties is a topic gathering momentum, because their behavior is reminiscent of that exhibited by proteins [8]. By integrating environmentally sensitive homopolymers into amphiphilic block copolymers, smart block copolymers with self assembled supramolecular structures that exhibit stimuli or environmentally responsive properties can be obtained [1]. Several synthetic polymers are known to have environmentally responsive properties. Changes in the physical, chemical or biochemical environment of …

The experimental study of rare decays of hadrons containing the b quark has been a fertile ground for some time, and keeps being one of the most interesting subjects in high energy physics. It has improved our understanding of hadronic processes, and allows investigating various aspects of the Standard Model and searching for hints of physics beyond the Standard Model. Examples are the comparison of branching fractions of charmless modes with predictions of models, the constraints on CKM angles (B{sup 0} {yields} {pi}{sup +}{pi}{sup -}, B {yields} DK, with D in suppressed modes), the observation of purely leptonic modes (B{sup {+-}} {yields} {tau}{sup {+-}}{nu}), the recently established difference in A{sub CP} between B{sup 0} {yields} K{sup +}{pi}{sup -} and B{sup {+-}} {yields} K{sup {+-}}{pi}{sup 0}, suspected to be a hint new physics. All of them came from a long and successful experimental activity with e{sup +}e{sup -} collisions at the {Upsilon}(4S) resonance. With hadronic colliders now coming into play, the study of rare decays is reaching new heights. Given the high cross section for production of all kinds of B hadrons, the record luminosities now provided by the Tevatron collider, and the LHC program in view for the next years, …

The top quark has been discovered in 1995 by CDF and D0 collaborations in proton-antiproton collisions at the Tevatron. The amount of data recorded by both experiments makes it possible to accurately measure the properties of this very massive quark. This thesis is devoted to the measurement of the top pair production cross-section via the strong interaction, in a final state composed of two electrons, two particle jets and missing transverse energy. It is based on a 1 fb{sup -1} data set collected by the D0 experiment between 2002 and 2006. The reconstruction and identification of electrons and jets is of major importance in this analysis, and have been studied in events where a Z boson is produced together with one or more jets. The Z+jets process is indeed the dominant physics background to top pair production in the dielectron final state. The primary goal of this cross-section measurement is to verify Standard Model predictions. In this document, this result is also interpreted to indirectly extract the top quark mass. Moreover, the cross-section measurement is sensitive to new physics such as the existence of a charged Higgs boson. The selection established for the cross-section analysis has been used to search …

The Standard Model of elementary particles can not be the final theory. There are theoretical reasons to expect the appearance of new physics, possibly at the energy scale of few TeV. Several possible theories of new physics have been proposed, each with unknown probability to be confirmed. Instead of arbitrarily choosing to examine one of those theories, this thesis is about searching for any sign of new physics in a model-independent way. This search is performed at the Collider Detector at Fermilab (CDF). The Standard Model prediction is implemented in all final states simultaneously, and an array of statistical probes is employed to search for significant discrepancies between data and prediction. The probes are sensitive to overall population discrepancies, shape disagreements in distributions of kinematic quantities of final particles, excesses of events of large total transverse momentum, and local excesses of data expected from resonances due to new massive particles. The result of this search, first in 1 fb{sup -1} and then in 2 fb{sup -1}, is null, namely no considerable evidence of new physics was found.

Several reactions producing odd-Z transactinide compound nuclei were studiedwith the 88-Inch Cyclotron and the Berkeley Gas-Filled Separator at the LawrenceBerkeley National Laboratory. The goal was to produce the same compound nucleus ator near the same excitation energy with similar values of angular momentum via differentnuclear reactions. In doing so, it can be determined if there is a preference in entrancechannel, because under these experimental conditions the survival portion of Swiatecki, Siwek-Wilcznska, and Wilczynski's"Fusion By Diffusion" model is nearly identical forthe two reactions. Additionally, because the same compound nucleus is produced, theexit channel is the same. Four compound nuclei were examined in this study: 258Db, 262Bh, 266Mt, and 272Rg. These nuclei were produced by using very similar heavy-ion induced-fusion reactions which differ only by one proton in the projectile or target nucleus (e.g.: 50Ti + 209Bi vs. 51V + 208Pb). Peak 1n exit channel cross sections were determined for each reaction in each pair, and three of the four pairs' cross sections were identical within statistical uncertainties. This indicates there is not an obvious preference of entrancechannel in these paired reactions. Charge equilibration immediately prior to fusionleading to a decreased fusion barrier is the likely cause of this phenomenon. In addition …

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We present a search for a narrow resonance in the t{bar b} mass spectrum using 1.9 fb{sup -1} of p{bar p} collisions at {radical}s = 1.96 TeV recorded with the CDF II detector at the Fermilab Tevatron. We select events with a lepton, neutrino candidate, and two or three jets from which to construct the t{bar b} mass. We quantify the result using the model of a massive Standard Model-like charged-boson (W{prime}) decaying to t{bar b}, but we are generally sensitive to the presence of any narrow state decaying to the third generation. For a purely right-handed W{prime} with Standard Model couplings, we set a new limit at 95% confidence of {sigma}(p{bar p} {yields} W{prime}{sub R}) x BR(W{prime}{sub R} {yields} t{bar b}) < 0.28 pb and M{sub W{prime}{sub R}} > 800 GeV/c{sup 2}. The limit increases to M{sub W{prime}{sub R}} > 825 GeV/c{sup 2} if decay to right-handed neutrinos is forbidden. These results are shown in Table 7 and plotted in Figure 7.1. The best prior search found M{sub W{prime}} {ge} 768 GeV/c{sup 2} if leptonic decays are forbidden [16]. For a simple W{prime} model with effective coupling g{sub W{prime}}, the cross-section is proportional to g{sub W{prime}}{sup 4}. Relaxing the …

The work presented here is the first measurement of the fraction of top quark pair production through gluon-gluon fusion. We use an integrated luminosity of 0.96 {+-} 0.06 fb{sup -1} of p{bar p} collisions at {radical}s of 1.96 TeV collected by the CDF II detector. We select t{bar t} candidates by identifying a high-p{sub T} lepton candidate, a large missing E{sub T} as evidence for a neutrino candidate and at least four high E{sub T} jets, one of which has to be identified as originating from a b quark. The challenge is to discriminate between the two production processes with the identical final state, gg {yields} t{bar t} and q{bar q} {yields} t{bar t}. We take advantage of the fact that compared to a quark, a gluon is more likely to radiate a low momentum gluon and therefore, one expects a larger number of charged particles with low p{sub T} in a process involving more gluons. Given the large uncertainties associated with the modeling of the low p{sub T} charged particle multiplicity, a data-driven technique was employed. Using calibration data samples, we show there exists a clear correlation between the observed average number of low p{sub T} charged particles and …

The production cross section for t{bar t} pairs decaying into two lepton final states was measured using data from the D0 detector at Fermilab. The measurement was made using a lepton+track selection, where one lepton is fully identified and the second lepton is observed as an isolated track. This analysis is designed to complement similar studies using two fully identified leptons [1]. The cross section for the lepton+track selection was found to be {sigma} = 5.2{sub -1.4}{sup +1.6}(stat){sub -0.8}{sup +0.9}(syst) {+-} 0.3(lumi) pb. The combined cross section using both the lepton+track data and the data from the electron+electron, electron+muon, and muon+muon samples is: {sigma} = 6.4{sub -0.9}{sup +0.9}(stat){sub -0.7}{sup +0.8}(syst) {+-} 0.4(lumi) pb.

All known experimental results on fundamental particles and their interactions can be described to great accuracy by a theory called the Standard Model. In the Standard Model of particle physics, the masses of particles are explained through the Higgs mechanism. The Higgs boson is the only Standard Model particle not discovered yet, and its observation or exclusion is an important test of the Standard Model. While the Standard Model predicts that a Higgs boson should exist, it does not exactly predict its mass. Direct searches have excluded a Higgs with m{sub H} < 114.4 GeV at 95% confidence level, while indirect measurements indicate that the mass should be less than 144 GeV. This analysis looks for W{sup {+-}}H {yields} {mu}{nu}{sub {mu}}b{bar b} in 1 fb{sup -1} of data collected with the D0 detector in p{bar p} collisions with {radical}s = 1.96 TeV. The analysis strategy relies on the tracking, calorimetry and muon reconstruction of the D0 experiment. The signature is a muon, missing transverse energy (E{sub T}) to account for the neutrino and two b-jets. The Higgs mass is reconstructed using the invariant mass of the two jets. Backgrounds are W{sup {+-}}b{bar b}, W{sup {+-}} c{bar c}, W{sup {+-}} + …

In recent years the study of stem and progenitor cells has moved to the forefront of research. Since the isolation of human hematopoietic stem cells in 1988 and the subsequent discovery of a self renewing population of multipotent cells in many tissues, many researchers have envisioned a better understanding of development and potential clinical usage in intractable diseases. Both these goals, however, depend on a solid understanding of the intracellular and extracellular forces that cause stem cells to differentiate to a specific cell fate. Many diseases of large scale cell loss have been suggested as candidates for stem cell based treatments. It is proposed that replacing the function of the damaged or defective cells by specific differentiation of stem or progenitor cells could treat the disease. Before cells can be directed to specific lineages, the mechanisms of differentiation must be better understood. Differentiation in vivo is an intensively complex system that is difficult to study. The goal of this research is to develop further understanding of the effects of soluble and extracellular matrix (ECM) cues on the differentiation of neural progenitor cells with the use of a simplified in vitro culture system. Specific research objectives are to study the differentiation …

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This Ph.D. thesis presents the measurement of inclusive jet cross sections in Z/{gamma}* {yields} e{sup +}e{sup -} events using 1.7 fb{sup -1} of data collected by the upgraded CDF detector during the Run II of the Tevatron. The Midpoint cone algorithm is used to search for jets in the events after identifying the presence of a Z/{gamma}* boson through the reconstruction of its decay products. The measurements are compared to next-to-LO (NLO) pQCD predictions for events with one and two jets in the final state. The perturbative predictions are corrected for the contributions of non-perturbative processes, like the underlying event and the fragmentation of the partons into jets of hadrons. These processes are not described by perturbation theory and must be estimated from phenomenological models. In this thesis, a number of measurements are performed to test different models of underlying event and hadronization implemented in LO plus parton shower Monte Carlo generator programs. Chapter 2 is devoted to the description of the theory of strong interactions and jet phenomenology at hadron colliders. Chapter 3 contains the description of the Tevatron collider and the CDF detector. The analysis is described in detail in Chapter 4. Chapter 5 shows the measurement of …

Observations of gamma-rays have been made from celestial sources such as active galaxies, gamma-ray bursts and supernova remnants as well as the Galactic ridge. The study of gamma rays can provide information about production mechanisms and cosmic-ray acceleration. In the high-energy regime, one of the dominant mechanisms for gamma-ray production is the decay of neutral pions produced in interactions of ultra-relativistic cosmic-ray nuclei and interstellar matter. Presented here is a parametric model for calculations of inclusive cross sections and transverse momentum distributions for secondary particles--gamma rays, e{sup {+-}}, {nu}{sub e}, {bar {nu}}{sub e}, {nu}{sub {mu}} and {bar {nu}}{sub {mu}}--produced in proton-proton interactions. This parametric model is derived on the proton-proton interaction model proposed by Kamae et al.; it includes the diffraction dissociation process, Feynman-scaling violation and the logarithmically rising inelastic proton-proton cross section. To improve fidelity to experimental data for lower energies, two baryon resonance excitation processes were added; one representing the {Delta}(1232) and the other multiple resonances with masses around 1600 MeV/c{sup 2}. The model predicts the power-law spectral index for all secondary particle to be about 0.05 lower in absolute value than that of the incident proton and their inclusive cross sections to be larger than those predicted …

The top quark is an extremely massive fundamental particle that is predominantly produced in pairs at particle collider experiments. The Standard Model of particle physics predicts that top quarks can also be produced singly by the electroweak force; however, this process is more difficult to detect because it occurs at a smaller rate and is more difficult to distinguish from background processes. The cross section of this process is related to the Cabbibo-Kobayashi-Maskawa matrix element |V{sub tb}|, and measurement of the single top quark production cross section is currently the only method to directly measure this quantity without assuming the number of generations of fermions. This thesis describes a measurement of the cross section of electroweak single top quark production in proton-antiproton collisions at a center-of-mass energy of 1.96 TeV. This analysis uses 2.2 fb{sup -1} of integrated luminosity recorded by the Collider Detector at Fermilab. The search is performed using a matrix element method which calculates the differential cross section for each event for several signal and background hypotheses. These numbers are combined into a single discriminant and used to construct templates from Monte Carlo simulation. A maximum likelihood fit to the data distribution gives a measurement of the …

A capillary electrophoresis (CE) method is developed to determine both NAD{sup +} and NADH levels in a single cell, based on an enzymatic cycling reaction. The detection limit can reach down to 0.2 amol NAD{sup +} and 1 amol NADH on a home-made CE-LIF setup. The method showed good reproducibility and specificity. After an intact cell was injected into the inlet of a capillary and lysed using a Tesla coil, intracellular NAD{sup +} and NADH were separated, incubated with the cycling buffer, and quantified by the amount of fluorescent product generated. NADH and NAD{sup +} levels of single cells of three cell lines and primary astrocyte culture were determined using this method. Comparing cellular NAD{sup +} and NADH levels with and without exposure to oxidative stress induced by H{sub 2}O{sub 2}, it was found that H9c2 cells respond to the stress by reducing both cellular NAD{sup +} and NADH levels, while astrocytes respond by increasing cellular NADH/NAD{sup +} ratio.

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The Fermilab Tevatron is currently the world's highest energy colliding beam facility. Its counter-rotating proton and antiproton beams collide at 2 TeV center-of-mass. Delivery of such intense beam fluxes to experiments has required improved knowledge of the Tevatron's beam optical lattice. An oscillating dipole magnet, referred to as an AC dipole, is one of such a tool to non-destructively assess the optical properties of the synchrotron. We discusses development of an AC dipole system for the Tevatron, a fast-oscillating (f {approx} 20 kHz) dipole magnet which can be adiabatically turned on and off to establish sustained coherent oscillations of the beam particles without affecting the transverse emittance. By utilizing an existing magnet and a higher power audio amplifier, the cost of the Tevatron AC dipole system became relatively inexpensive. We discuss corrections which must be applied to the driven oscillation measurements to obtain the proper interpretation of beam optical parameters from AC dipole studies. After successful operations of the Tevatron AC dipole system, AC dipole systems, similar to that in the Tevatron, will be build for the CERN LHC. We present several measurements of linear optical parameters (beta function and phase advance) for the Tevatron, as well as studies of …

Central exclusive production of a system X in a collision between two hadrons h is defined as hh {yields} h + X + h with no other activity apart from the decay products of X. This thesis presents predictions for the production cross section of a CP violating supersymmetric Higgs boson and the radion of the Randall-Sundrum model. The ExHuME Monte Carlo generator was written to simulate central exclusive processes and is described and explored. A comparison to di-jet observations made by the D0 detector at the Tevatron, Fermilab between January and June 2004 is made and the distributions found support the predictions of ExHuME.

In solid state chemistry, numerous investigations have been attempted to address the relationships between chemical structure and physical properties. Such questions include: (1) How can we understand the driving forces of the atomic arrangements in complex solids that exhibit interesting chemical and physical properties? (2) How do different elements distribute themselves in a solid-state structure? (3) Can we develop a chemical understanding to predict the effects of valence electron concentration on the structures and magnetic ordering of systems by both experimental and theoretical means? Although these issues are relevant to various compound classes, intermetallic compounds are especially interesting and well suited for a joint experimental and theoretical effort. For intermetallic compounds, the questions listed above are difficult to answer since many of the constituent atoms simply do not crystallize in the same manner as in their separate, elemental structures. Also, theoretical studies suggest that the energy differences between various structural alternatives are small. For example, Al and Ga both belong in the same group on the Periodic Table of Elements and share many similar chemical properties. Al crystallizes in the fcc lattice with 4 atoms per unit cell and Ga crystallizes in an orthorhombic unit cell lattice with 8 atoms …

We present a measurement of the W boson production charge asymmetry using the W {yields} e{nu} decay channel. We use data collected the Collider Detector at Fermilab (CDF) from p{bar p} collisions at {radical}s = 1.96 TeV. The data were collected up to February 2006 (Run II) and represent an integrated luminosity of 1 fb{sup -1}. The experimental measurement of W production charge asymmetry is compared to higher order QCD predictions generated using MRST2006 and CTEQ6 parton distribution functions (PDF). The asymmetry provides new input on the momentum fraction dependence of the u and d quark parton distribution functions (PDF) within the proton over the fraction of proton's momentum range from 0.002 < x < 0.8 corresponding to -3.0 < y{sub W} < 3.0 at Q{sup 2} {approx} M{sub W}{sup 2}.

A search for the rare, flavour-changing neutral current decay B{sup +} {yields} K{sup +} {nu}{bar {nu}} is presented using 81.9 fb{sup -1} of data collected at the {Upsilon}(4S) resonance by the BABAR experiment. Signal candidate events are selected through the identification of a high momentum charged kaon and significant missing energy, where the companion B{sup -} in the event has decayed semileptonically via B{sup -} {yields} D{sup 0}{ell}{sup -}{bar {nu}} X and X is kinematically constrained to be either nothing or a low momentum transition photon or {pi}{sup 0}. The analysis was performed blind and 6 candidates were selected with a background expectation of 3.4 {+-} 1.2. This leads to a limit on the branching fraction of {Beta} (B{sup +} {yields} K{sup +} {nu}{bar {nu}}) < 7.2 x 10{sup -5} at 90% confidence level. We also search for the reaction B{sup +} {yields} {pi}{sup +}{nu}{bar {nu}} and extract a limit on the branching fraction of {Beta}(B{sup +} {yields} {pi}{sup +}{nu}{bar {nu}}) < 2.5 x 10{sup -4} at 90% confidence level.

The WARP code is a robust electrostatic particle-in-cell simulation package used to model charged particle beams with strong space-charge forces. A fundamental operation associated with seeding detailed simulations of a beam transport channel is to generate initial conditions where the beam distribution is matched to the structure of a periodic focusing lattice. This is done by solving for periodic, matched solutions to a coupled set of ODEs called the Kapchinskij-Vladimirskij (KV) envelope equations, which describe the evolution of low-order beam moments subject to applied lattice focusing, space-charge defocusing, and thermal defocusing forces. Recently, an iterative numerical method was developed (Lund, Chilton, and Lee, Efficient computation of matched solutions to the KV envelope equations for periodic focusing lattices, Physical Review Special Topics-Accelerators and Beams 9, 064201 2006) to generate matching conditions in a highly flexible, convergent, and fail-safe manner. This method is extended and implemented in the WARP code as a Python package to vastly ease the setup of detailed simulations. In particular, the Python package accommodates any linear applied lattice focusing functions without skew coupling, and a more general set of beam parameter specifications than its predecessor. Lattice strength iteration tools were added to facilitate the implementation of problems with …

The generation, motion, and interaction of dislocations play key roles during the plastic deformation process of crystalline solids. 3D Dislocation Dynamics has been employed as a mesoscale simulation algorithm to investigate the collective and cooperative behavior of dislocations. Most current research on 3D Dislocation Dynamics is based on the solutions available in the framework of classical isotropic elasticity. However, due to some degree of elastic anisotropy in almost all crystalline solids, it is very necessary to extend 3D Dislocation Dynamics into anisotropic elasticity. In this study, first, the details of efficient and accurate incorporation of the fully anisotropic elasticity into 3D discrete Dislocation Dynamics by numerically evaluating the derivatives of Green's functions are described. Then the intrinsic properties of perfect dislocations, including their stability, their core properties and disassociation characteristics, in newly discovered rare earth-based intermetallics and in conventional intermetallics are investigated, within the framework of fully anisotropic elasticity supplemented with the atomistic information obtained from the ab initio calculations. Moreover, the evolution and interaction of dislocations in these intermetallics as well as the role of solute segregation are presented by utilizing fully anisotropic 3D dislocation dynamics. The results from this work clearly indicate the role and the importance of …