Resource Type

Predictive Assay For Cancer Targets (open access)

Predictive Assay For Cancer Targets

Early detection of cancer is a key element in successful treatment of the disease. Understanding the particular type of cancer involved, its origins and probable course, is also important. PhIP (2-amino-1-methyl-6 phenylimidazo [4,5-b]pyridine), a heterocyclic amine produced during the cooking of meat at elevated temperatures, has been shown to induce mammary cancer in female, Sprague-Dawley rats. Tumors induced by PhIP have been shown to contain discreet cytogenetic signature patterns of gains and losses using comparative genomic hybridization (CGH). To determine if a protein signature exists for these tumors, we are analyzing expression levels of the protein products of the above-mentioned tumors in combination with a new bulk protein subtractive assay. This assay produces a panel of antibodies against proteins that are either on or off in the tumor. Hybridization of the antibody panel onto a 2-D gel of tumor or control protein will allow for identification of a distinct protein signature in the tumor. Analysis of several gene databases has identified a number of rat homologs of human cancer genes located in these regions of gain and loss. These genes include the oncogenes c-MYK, ERBB2/NEU, THRA and tumor suppressor genes EGR1 and HDAC3. The listed genes have been shown to …
Date: September 19, 2005
Creator: Suess, A.; Nguyen, C.; Sorensen, K.; Montgomery, J.; Souza, B.; Kulp, K. et al.
System: The UNT Digital Library
Evaluating Potential for Large Releases from CO2 StorageReservoirs: Analogs, Scenarios, and Modeling Needs (open access)

Evaluating Potential for Large Releases from CO2 StorageReservoirs: Analogs, Scenarios, and Modeling Needs

While the purpose of geologic storage of CO{sub 2} in deep saline formations is to trap greenhouse gases underground, the potential exists for CO{sub 2} to escape from the target reservoir, migrate upward along permeable pathways, and discharge at the land surface. Such discharge is not necessarily a serious concern, as CO{sub 2} is a naturally abundant and relatively benign gas in low concentrations. However, there is a potential risk to health, safety and environment (HSE) in the event that large localized fluxes of CO{sub 2} were to occur at the land surface, especially where CO{sub 2} could accumulate. In this paper, we develop possible scenarios for large CO{sub 2} fluxes based on the analysis of natural analogues, where large releases of gas have been observed. We are particularly interested in scenarios which could generate sudden, possibly self-enhancing, or even eruptive release events. The probability for such events may be low, but the circumstances under which they might occur and potential consequences need to be evaluated in order to design appropriate site selection and risk management strategies. Numerical modeling of hypothetical test cases is needed to determine critical conditions for such events, to evaluate whether such conditions may be possible …
Date: September 19, 2005
Creator: Birkholzer, Jens; Pruess, Karsten; Lewicki, Jennifer; Tsang,Chin-Fu & Karimjee, Anhar
System: The UNT Digital Library
X-Ray Emission Cross Sections following Charge Exchange by Multiply-Charged Ions of Astrophysical Interest (open access)

X-Ray Emission Cross Sections following Charge Exchange by Multiply-Charged Ions of Astrophysical Interest

State selective nl-electron capture cross sections are presented for highly charged ions with Z = 6-10 colliding with atoms and molecules. The energy range investigated was from 1 eV/amu (v = 0.006 a.u.) to 100 keV/amu (v =2.0 a.u.). The energy dependence of the l-level populations is investigated. The K-shell x-ray emission cross sections are determined by using the calculated state-selective electron capture results as input and then applying hydrogenic branching and cascading values for the photon emission. A major shift in the line emission from being almost solely Lyman-{alpha} transitions at the highest collisions energies to strong high-n to 1s transitions at the lowest energies is observed. The calculated cross sections are in reasonable accord with measurements made by Greenwood et al, Phys. Rev. A 63, 062707 (2001), using O{sup 8+} and Ne{sup 10+} on various targets at 3 keV/amu. The calculations are also in accord with x-ray emission cross section data obtained on the EBIT machine at LLNL where O{sup 8+} and Ne{sup 10+} high resolution measurements were made at a temperature of 10 eV/amu for a series of targets with varying ionization potentials. The Ne{sup 10+} data clearly shows the contribution from multiple capture followed by Auger …
Date: September 19, 2005
Creator: Otranto, S; Olson, R E & Beiersdorfer, P
System: The UNT Digital Library
Transition to a Virtually Incompressible Oxide Phase at a Shock Pressure of 120 GPa (1.2 Mbar): Gd3Ga5O12 (open access)

Transition to a Virtually Incompressible Oxide Phase at a Shock Pressure of 120 GPa (1.2 Mbar): Gd3Ga5O12

Cubic, single-crystal, transparent Gd{sub 3}Ga{sub 5}O{sub 12} has a density of 7.10 g/cm{sup 3}, a Hugoniot elastic limit (HEL) of 30 GPa, and undergoes a continuous phase transition from 65 GPa to a quasi-incompressible (QI) phase at 120 GPa. Only diamond has a larger HEL. The QI phase of Gd{sub 3}Ga{sub 5}O{sub 12} is more incompressible than diamond from 170 to 260 GPa. Electrical conductivity measurements indicate the QI phase has a bandgap of 3.1 eV. Gd{sub 3}Ga{sub 5}O{sub 12} can be used to obtain substantially higher pressures and lower temperatures in metallic fluid hydrogen than was achieved previously by shock reverberation between Al{sub 2}O{sub 3} disks. Dynamic compression achieves pressures, densities, and temperatures that enable investigation of ultracondensed matter at conditions yet to be achieved by any other technique. The prototypical example is observation of minimum metallic conductivity (MMC) of dense fluid hydrogen at 140 GPa, nine-fold compression of liquid density, and {approx}3000 K [1-3]. The high pressure and density and relatively low temperature are achieved by multiple-shock compression [2]. Temperature T is relatively low in the sense that T/TP{sub F} {approx} 0.01, where T{sub F} is the Fermi temperature. The time scale of compression is sufficiently long to …
Date: September 19, 2005
Creator: Mashimo, T; Chau, R; Zhang, Y; Kobayoshi, T; Sekine, T; Fukuoka, K et al.
System: The UNT Digital Library
Securing Resources in Collaborative Environments: A Peer-to-peerApproach (open access)

Securing Resources in Collaborative Environments: A Peer-to-peerApproach

We have developed a security model that facilitates control of resources by autonomous peers who act on behalf of collaborating users. This model allows a gradual build-up of trust. It enables secure interactions among users that do not necessarily know each other and allows them to build trust over the course of their collaboration. This paper describes various aspects of our security model and describes an architecture that implements this model to provide security in pure peer-to-peer environments.
Date: September 19, 2005
Creator: Berket, Karlo; Essiari, Abdelilah & Thompson, Mary R.
System: The UNT Digital Library
Modeling non-equilibrium phase transitions in isentropically compressed Bi (open access)

Modeling non-equilibrium phase transitions in isentropically compressed Bi

We report here on modeling of non-equilibrium phase transitions in Bi samples isentropically compressed to 120 GPa by a ramped drive, which is produced using the Janus laser. In the experiments, the Bi samples are attached to windows of LiF or sapphire, and the velocity history of the sample-window interface is recorded with line VISAR. The 1D response of the targets is modeled using a multiphase Bi EOS, the Andrews-Hayes method for non-equilibrium transitions, and a Boettger-Wallace kinetics model. The pressure drive is deduced by back integration of VISAR data from shots performed with Al samples.
Date: September 19, 2005
Creator: Kane, J & Smith, R
System: The UNT Digital Library
Photonic Crystal Laser-Driven Accelerator Structures (open access)

Photonic Crystal Laser-Driven Accelerator Structures

We discuss simulated photonic crystal structure designs for laser-driven particle acceleration, focusing on three-dimensional planar structures based on the so-called ''woodpile'' lattice. We demonstrate guiding of a speed-of-light accelerating mode by a defect in the photonic crystal lattice and discuss the properties of this mode. We also discuss particle beam dynamics in the structure, presenting a novel method for focusing the beam. In addition we describe some potential coupling methods for the structure.
Date: September 19, 2005
Creator: Cowan, B.
System: The UNT Digital Library
Flow Through PCR Module of BioBriefcase (open access)

Flow Through PCR Module of BioBriefcase

The BioBriefcase is an integrated briefcase-sized aerosol collection and analysis system for autonomous monitoring of the environment, which is currently being jointly developed by Lawrence Livermore and Sandia National Laboratories. This poster presents results from the polymerase chain reaction (PCR) module of the system. The DNA must be purified after exiting the aerosol collector to prevent inhibition of the enzymatic reaction. Traditional solid-phase extraction results in a large loss of sample. In this flow-through system, we perform sample purification, concentration and amplification in one reactor, which minimizes the loss of material. The sample from the aerosol collector is mixed with a denaturation solution prior to flowing through a capillary packed with silica beads. The DNA adheres to the silica beads allowing the environmental contaminants to be flushed to waste while effectively concentrating the DNA on the silica matrix. The adhered DNA is amplified while on the surface of the silica beads, resulting in a lower limit of detection than an equivalent eluted sample. Thus, this system is beneficial since more DNA is available for amplification, less reagents are utilized, and contamination risks are reduced.
Date: September 19, 2005
Creator: Arroyo, E. S.; Wheeler, E. K.; Hindson, B.; Nasarabadi, S.; Vrankovich, G.; Bell, P. et al.
System: The UNT Digital Library
Double-passed, high-energy quasi-phase-matched optical parametric chirped-pulse amplifier (open access)

Double-passed, high-energy quasi-phase-matched optical parametric chirped-pulse amplifier

Quasi-phase-matched (QPM) optical parametric chirped-pulse amplification (OPCPA) in periodically poled materials such as periodically poled LiNbO{sub 3} (PPLN) and periodically poled KTiOPO{sub 4} (PPKTP) has been shown to exhibit advantages over the OPCPA in bulk nonlinear crystals. [GHH98, RPN02] The use of the maximum material nonlinear coefficient results in ultra-high gain with low pump peak power. Furthermore, propagation of signal, pump, and idler beams along one of the crystal principal axes eliminates the birefringent walk-off, reduces angular sensitivity, and improves beam quality. Relatively high level of parasitic parametric fluorescence (PF) in QPM OPCPA represents an impediment for simple, single-stage, high-gain amplification of optical pulses from nJ to mJ energies. PF in QPM is increased when compared to PF in critical phase matching in bulk crystals as a result of broader angular acceptance of the nonlinear conversion process. PF reduces prepulse contrast and conversion efficiency by competition with the signal pulse for pump pulse energy. Previous experiments with QPM OPCPA have thus resulted in pulse energies limited to tens of {mu}J. [JSE03] Optical parametric amplification of a narrowband signal pulse in PPKTP utilizing two pump beams has been demonstrated at a mJ-level, [FPK03] but the conversion efficiency has been limited by …
Date: September 19, 2005
Creator: Jovanovic, I; Forget, N; Brown, C G; Ebbers, C A; Blanc, C L & Barty, C J
System: The UNT Digital Library