This study examines the waste of cotton gins as a potential alternative energy source, on account of its heat content, availability, and low emission rates. To confirm that this potential energy source meets minimum industrial fuel standards, this research has carried out an investigation of some important physical characteristics and toxic element analysis of cotton gin waste. Using cotton gin waste as fuel is an attractive solution to the problems of disposing of a surplus agricultural waste as well as supplementing fuel must meet both environmental emission standards and industrial fuel standards, the physical and chemical characteristics of cotton gin waste and its toxic element concentrations are important for its objective evaluation as a fuel. Constituent components, moisture contents, and ash contents of four separate parts of cotton gin waste were determined and evaluated closely following the American Society for Testing and Materials (ASTM) test methods. The three most toxic heavy metals, Arsenic (As), Chromium (Cr), and Lead (Pb), chosen for quantitative analysis were determined by using an inductively coupled plasma atomic emission spectrometry and a microwave oven sample digestion method.