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Cluster K Mycobacteriophages: Insights into the Evolutionary Origins of Mycobacteriophage TM4 (open access)

Cluster K Mycobacteriophages: Insights into the Evolutionary Origins of Mycobacteriophage TM4

Article on Cluster K mycobacteriophages and insights into the evolutionary origins of mycobacteriophage TM4.
Date: October 2011
Creator: Pope, Welkin H.; Ferreira, Christina M.; Jacobs-Sera, Deborah; Benjamin, Robert C.; Davis, Ariangela J.; DeJong, Randall J. et al.
System: The UNT Digital Library
A Network Control Theory Approach to Modeling and Optimal Control of Zoonoses: Case Study of Brucellosis Transmission in Sub-Saharan Africa (open access)

A Network Control Theory Approach to Modeling and Optimal Control of Zoonoses: Case Study of Brucellosis Transmission in Sub-Saharan Africa

Article on a network control theory approach to modeling and optimal control of zoonoses and a case study of brucellosis transmission in sub-Saharan Africa.
Date: October 2011
Creator: Roy, Sandip; McElwain, Terry F. & Wan, Yan
System: The UNT Digital Library
Crystal Structure of Thrombin in Complex with S-Variegin: Insights of a Novel Mechanism of Inhibition and Design of Tunable Thrombin Inhibitors (open access)

Crystal Structure of Thrombin in Complex with S-Variegin: Insights of a Novel Mechanism of Inhibition and Design of Tunable Thrombin Inhibitors

Article on the crystal structure of thrombin in complex with s-variegin and insights of a novel mechanism of inhibition and design of tunable thrombin inhibitors.
Date: October 2011
Creator: Koh, Cho Yeow; Kumar, Sundramurthy; Kazimirova, Maria; Nuttall, Patricia A.; Radhakrishnan, Uvaraj P.; Kim, Seongcheol et al.
System: The UNT Digital Library
Halo Formation And Emittance Growth of Positron Beams in Plasmas (open access)

Halo Formation And Emittance Growth of Positron Beams in Plasmas

An ultrarelativistic 28.5 GeV, 700-{micro}m-long positron bunch is focused near the entrance of a 1.4-m-long plasma with a density n{sub e} between {approx}10{sup 13} and {approx}5 x 10{sup 14} cm{sup -3}. Partial neutralization of the bunch space charge by the mobile plasma electrons results in a reduction in transverse size by a factor of {approx}3 in the high emittance plane of the beam {approx}1 m downstream from the plasma exit. As n{sub e} increases, the formation of a beam halo containing {approx}40% of the total charge is observed, indicating that the plasma focusing force is nonlinear. Numerical simulations confirm these observations. The bunch with an incoming transverse size ratio of {approx}3 and emittance ratio of {approx}5 suffers emittance growth and exits the plasma with approximately equal sizes and emittances.
Date: October 25, 2011
Creator: Muggli, P.; Blue, B. E.; Clayton, C. E.; Decker, F. J.; Hogan, M. J.; Huang, C. et al.
System: The UNT Digital Library
Performance Validation and Scaling of a Capillary Membrane Solid-Liquid Separation System (open access)

Performance Validation and Scaling of a Capillary Membrane Solid-Liquid Separation System

Algaeventure Systems (AVS) has previously demonstrated an innovative technology for dewatering algae slurries that dramatically reduces energy consumption by utilizing surface physics and capillary action. Funded by a $6M ARPA-E award, transforming the original Harvesting, Dewatering and Drying (HDD) prototype machine into a commercially viable technology has required significant attention to material performance, integration of sensors and control systems, and especially addressing scaling issues that would allow processing extreme volumes of algal cultivation media/slurry. Decoupling the harvesting, dewatering and drying processes, and addressing the rate limiting steps for each of the individual steps has allowed for the development individual technologies that may be tailored to the specific needs of various cultivation systems. The primary performance metric used by AVS to assess the economic viability of its Solid-Liquid Separation (SLS) dewatering technology is algae mass production rate as a function of power consumption (cost), cake solids/moisture content, and solids capture efficiency. An associated secondary performance metric is algae mass loading rate which is dependent on hydraulic loading rate, area-specific hydraulic processing capacity (gpm/in2), filter:capillary belt contact area, and influent algae concentration. The system is capable of dewatering 4 g/L (0.4%) algae streams to solids concentrations up to 30% with capture efficiencies …
Date: October 25, 2011
Creator: Rogers, S.; Cook, J.; Juratovac, J.; Goodwillie, J.; Burke, T. & Stuart, B., ed.
System: The UNT Digital Library
Large Synoptic Survey Telescope: From Science Drivers to Reference Design (open access)

Large Synoptic Survey Telescope: From Science Drivers to Reference Design

In the history of astronomy, major advances in our understanding of the Universe have come from dramatic improvements in our ability to accurately measure astronomical quantities. Aided by rapid progress in information technology, current sky surveys are changing the way we view and study the Universe. Next-generation surveys will maintain this revolutionary progress. We focus here on the most ambitious survey currently planned in the visible band, the Large Synoptic Survey Telescope (LSST). LSST will have unique survey capability in the faint time domain. The LSST design is driven by four main science themes: constraining dark energy and dark matter, taking an inventory of the Solar System, exploring the transient optical sky, and mapping the Milky Way. It will be a large, wide-field ground-based system designed to obtain multiple images covering the sky that is visible from Cerro Pachon in Northern Chile. The current baseline design, with an 8.4 m (6.5 m effective) primary mirror, a 9.6 deg{sup 2} field of view, and a 3,200 Megapixel camera, will allow about 10,000 square degrees of sky to be covered using pairs of 15-second exposures in two photometric bands every three nights on average. The system is designed to yield high image …
Date: October 14, 2011
Creator: Ivezic, Z.; Axelrod, T.; Brandt, W. N.; Burke, D. L.; Claver, C. F.; Connolly, A. et al.
System: The UNT Digital Library
Loads Analysis of Several Offshore Floating Wind Turbine Concepts (open access)

Loads Analysis of Several Offshore Floating Wind Turbine Concepts

This paper presents a comprehensive dynamic-response analysis of six offshore floating wind turbine concepts.
Date: October 1, 2011
Creator: Robertson, A. N. & Jonkman, J. M.
System: The UNT Digital Library
Structural Design of a Horizontal-Axis Tidal Current Turbine Composite Blade (open access)

Structural Design of a Horizontal-Axis Tidal Current Turbine Composite Blade

This paper describes the structural design of a tidal composite blade. The structural design is preceded by two steps: hydrodynamic design and determination of extreme loads. The hydrodynamic design provides the chord and twist distributions along the blade length that result in optimal performance of the tidal turbine over its lifetime. The extreme loads, i.e. the extreme flap and edgewise loads that the blade would likely encounter over its lifetime, are associated with extreme tidal flow conditions and are obtained using a computational fluid dynamics (CFD) software. Given the blade external shape and the extreme loads, we use a laminate-theory-based structural design to determine the optimal layout of composite laminas such that the ultimate-strength and buckling-resistance criteria are satisfied at all points in the blade. The structural design approach allows for arbitrary specification of the chord, twist, and airfoil geometry along the blade and an arbitrary number of shear webs. In addition, certain fabrication criteria are imposed, for example, each composite laminate must be an integral multiple of its constituent ply thickness. In the present effort, the structural design uses only static extreme loads; dynamic-loads-based fatigue design will be addressed in the future. Following the blade design, we compute the …
Date: October 1, 2011
Creator: Bir, G. S.; Lawson, M. J. & Li, Y.
System: The UNT Digital Library
Wakefield Calculations for the LCLS in Multbunch Operation (open access)

Wakefield Calculations for the LCLS in Multbunch Operation

Normally the Linac Coherent Light Source (LCLS) operates in single-bunch mode, sending a bunch of up to 250 pC charge at 120 Hz through the linac and the undulator, and the resulting FEL radiation into one of the experimental hutches. With two bunches per rf pulse, each pulse could feed either two experiments or one experiment in a pump-probe type configuration. Two-bunch FEL operation has already been briefly tested at the LCLS, and works reasonably well, although not yet routinely. In this report we study the longitudinal and transverse long-range (bunch-to-bunch) wakefields of the linacs and their effects on LCLS performance in two-bunch mode, which is initially the most likely scenario. The longitudinal wake changes the average energy at the second bunch, and the transverse wake misaligns the second bunch (in transverse phase space) in the presence of e.g. transverse injection jitter or quad misalignments. Finally, we extend the study to consider the LCLS with trains of up to 20 bunches per rf pulse. In the LCLS the bunch is created in an rf gun, and then passes in sequence through Linac 0, Linac 1, Linac X, Bunch Compressor 1 (BC 1), Linac 2, BC 2, Linac 3, and finally …
Date: October 17, 2011
Creator: Bane, K.
System: The UNT Digital Library
Dynamical coupled-channels study of meson production reactions from EBAC@Jlab (open access)

Dynamical coupled-channels study of meson production reactions from EBAC@Jlab

We present the current status of a combined and simultaneous analysis of meson production reactions based on a dynamical coupled-channels (DCC) model, which is conducted at Excited Baryon Analysis Center (EBAC) of Jefferson Lab.
Date: October 1, 2011
Creator: Kamano, Hiroyuki
System: The UNT Digital Library
RADIATION DOSE ASSESSMENT FOR THE BIOTA OF TERRESTRIAL ECOSYSTEMS IN THE SHORELINE ZONE OF THE CHERNOBYL NUCLEAR POWER PLANT COOLING POND (open access)

RADIATION DOSE ASSESSMENT FOR THE BIOTA OF TERRESTRIAL ECOSYSTEMS IN THE SHORELINE ZONE OF THE CHERNOBYL NUCLEAR POWER PLANT COOLING POND

Radiation exposure of the biota in the shoreline area of the Chernobyl Nuclear Power Plant Cooling Pond was assessed to evaluate radiological consequences from the decommissioning of the Cooling Pond. The article addresses studies of radioactive contamination of the terrestrial faunal complex and radionuclide concentration ratios in bodies of small birds, small mammals, amphibians, and reptiles living in the area. The data were used to calculate doses to biota using the ERICA Tool software. Doses from {sup 90}Sr and {sup 137}Cs were calculated using the default parameters of the ERICA Tool and were shown to be consistent with biota doses calculated from the field data. However, the ERICA dose calculations for plutonium isotopes were much higher (2-5 times for small mammals and 10-14 times for birds) than the doses calculated using the experimental data. Currently, the total doses for the terrestrial biota do not exceed maximum recommended levels. However, if the Cooling Pond is allowed to drawdown naturally and the contaminants of the bottom sediments are exposed and enter the biological cycle, the calculated doses to biota may exceed the maximum recommended values. The study is important in establishing the current exposure conditions such that a baseline exists from which …
Date: October 1, 2011
Creator: Farfan, E. & Jannik, T.
System: The UNT Digital Library
Ongoing Space Nuclear Systems Development in the United States (open access)

Ongoing Space Nuclear Systems Development in the United States

Reliable, long-life power systems are required for ambitious space exploration missions. Nuclear power and propulsion options can enable a bold, new set of missions and introduce propulsion capabilities to achieve access to science destinations that are not possible with more conventional systems. Space nuclear power options can be divided into three main categories: radioisotope power for heating or low power applications; fission power systems for non-terrestrial surface application or for spacecraft power; and fission power systems for electric propulsion or direct thermal propulsion. Each of these areas has been investigated in the United States since the 1950s, achieving various stages of development. While some nuclear systems have achieved flight deployment, others continue to be researched today. This paper will provide a brief overview of historical space nuclear programs in the U.S. and will provide a summary of the ongoing space nuclear systems research, development, and deployment in the United States.
Date: October 1, 2011
Creator: Bragg-Sitton, S.; Werner, J.; Johnson, S.; Houts, Michael G.; Palac, Donald T.; Mason, Lee S. et al.
System: The UNT Digital Library
Effect of Ambient Design Temperature on Air-Cooled Binary Plant Output (open access)

Effect of Ambient Design Temperature on Air-Cooled Binary Plant Output

Air-cooled binary plants are designed to provide a specified level of power production at a particular air temperature. Nominally this air temperature is the annual mean or average air temperature for the plant location. This study investigates the effect that changing the design air temperature has on power generation for an air-cooled binary plant producing power from a resource with a declining production fluid temperature and fluctuating ambient temperatures. This analysis was performed for plants operating both with and without a geothermal fluid outlet temperature limit. Aspen Plus process simulation software was used to develop optimal air-cooled binary plant designs for specific ambient temperatures as well as to rate the performance of the plant designs at off-design operating conditions. Results include calculation of annual and plant lifetime power generation as well as evaluation of plant operating characteristics, such as improved power generation capabilities during summer months when electric power prices are at peak levels.
Date: October 1, 2011
Creator: Wendt, Dan & Mines, Greg
System: The UNT Digital Library
Wind Turbine Drivetrain Condition Monitoring - An Overview (open access)

Wind Turbine Drivetrain Condition Monitoring - An Overview

This paper provides an overview of wind turbine drivetrain condition monitoring based on presentations from a condition monitoring workshop organized by the National Renewable Energy Laboratory in 2009 and on additional references.
Date: October 1, 2011
Creator: Sheng, S. & Veers, P.
System: The UNT Digital Library
Matlab Based LOCO (open access)

Matlab Based LOCO

The LOCO algorithm has been used by many accelerators around the world. Although the uses for LOCO vary, the most common use has been to find calibration errors and correct the optics functions. The light source community in particular has made extensive use of the LOCO algorithms to tightly control the beta function and coupling. Maintaining high quality beam parameters requires constant attention so a relatively large effort was put into software development for the LOCO application. The LOCO code was originally written in FORTRAN. This code worked fine but it was somewhat awkward to use. For instance, the FORTRAN code itself did not calculate the model response matrix. It required a separate modeling code such as MAD to calculate the model matrix then one manually loads the data into the LOCO code. As the number of people interested in LOCO grew, it required making it easier to use. The decision to port LOCO to Matlab was relatively easy. It's best to use a matrix programming language with good graphics capability; Matlab was also being used for high level machine control; and the accelerator modeling code AT, [5], was already developed for Matlab. Since LOCO requires collecting and processing a …
Date: October 18, 2011
Creator: Portmann, Greg; Safranek, James & Huang, Xiaobiao
System: The UNT Digital Library
Fireside Corrosion in Oxy-Fuel Combustion of Coal (open access)

Fireside Corrosion in Oxy-Fuel Combustion of Coal

The goal is to develop technologies for pulverized coal boilers with >90% CO{sub 2} capture and sequestration and <35% increase in the cost of electricity. Air-fired power plant experience shows a corrosion loss max at 680-700 C. Low melting point alkali metal trisulfates, such as (K,Na){sub 3}Fe(SO{sub 4}){sub 3}, become thermally unstable above this temperature range. Some overall conclusions are: (1) CO{sub 2} + 30% H{sub 2}O more corrosive than Ar + 30% H{sub 2}O; (2) Excess O{sub 2} in H{sub 2}O can, in some cases, greatly increase oxidation; (3) Coal ash is generally innocuous without SO{sub 3}3 in gas phase; and (4) Long-term exposures are starting to establish differences between air-firing and oxy-firing conditions.
Date: October 9, 2011
Creator: Holcomb, G. R.; Tylczak, J.; Meier, G. H.; Jung, K.; Mu, N.; Yanar, N. M. et al.
System: The UNT Digital Library
Towards an Integrated Model of the NIC Layered Implosions (open access)

Towards an Integrated Model of the NIC Layered Implosions

A detailed simulation-based model of the June 2011 National Ignition Campaign (NIC) cryogenic DT experiments is presented. The model is based on integrated hohlraum-capsule simulations that utilize the best available models for the hohlraum wall, ablator, and DT equations of state and opacities. The calculated radiation drive was adjusted by changing the input laser power to match the experimentally measured shock speeds, shock merger times, peak implosion velocity, and bangtime. The crossbeam energy transfer model was tuned to match the measured time-dependent symmetry. Mid-mode mix was included by directly modeling the ablator and ice surface perturbations up to mode 60. Simulated experimental values were extracted from the simulation and compared against the experiment. The model adjustments brought much of the simulated data into closer agreement with the experiment, with the notable exception of the measured yields, which were 15-45% of the calculated yields.
Date: October 31, 2011
Creator: Jones, O. S.; Callahan, D. A.; Cerjan, C. J.; Clark, D. S.; Edwards, M. J.; Glenzer, S. H. et al.
System: The UNT Digital Library
Measurements of Exclusive B to X(C) L Anti-Nu(L) Decays And |V(Cb)| at BaBar (open access)

Measurements of Exclusive B to X(C) L Anti-Nu(L) Decays And |V(Cb)| at BaBar

The authors present recent results on exclusive {bar B} {yields} X{sub c}{ell}{sup -}{bar {nu}}{sub {ell}} decays and measurements of the CKM matrix element |V{sub cb}| based on data collected at the {Upsilon}(4S) resonance with the BABAR detector at the PEP-II e{sup +}e{sup -} storage rings.
Date: October 12, 2011
Creator: Pegna, David Lopes
System: The UNT Digital Library
A low-power wave union TDC implemented in FPGA (open access)

A low-power wave union TDC implemented in FPGA

A low-power time-to-digital convertor (TDC) for an application inside a vacuum has been implemented based on the Wave Union TDC scheme in a low-cost field programmable gate array (FPGA) device. Bench top tests have shown that a time measurement resolution better than 30 ps (standard deviation of time differences between two channels) is achieved. Special firmware design practices are taken to reduce power consumption. The measurements indicate that with 32 channels fitting in the FPGA device, the power consumption on the FPGA core voltage is approximately 9.3 mW/channel and the total power consumption including both core and I/O banks is less than 27 mW/channel.
Date: October 1, 2011
Creator: Wu, Jinyuan; Shi, Yanchen & Zhu, Douglas
System: The UNT Digital Library
EDITORIAL HPJ SPECIAL ISSUE DEDICATION (open access)

EDITORIAL HPJ SPECIAL ISSUE DEDICATION

This issue is dedicated to the heroes and professionals who helped protect the world from nuclear disasters and to those who were displaced by these catastrophes.
Date: October 1, 2011
Creator: Farfan, E.
System: The UNT Digital Library
Review of Heavy Flavor Physics at the Tevatron (open access)

Review of Heavy Flavor Physics at the Tevatron

The D0 and CDF detectors at the Fermilab Tevatron have each accumulated more that 9 fb{sup -1} of integrated luminosity. The corresponding large datasets enable the two experiments to perform unprecedented studies of heavy flavor hadron properties. We present recent D0 and CDF measurements, focusing on rare decays and CP violation in B-meson decays. Flavor Physics probes new phenomena by either searching for small deviations from the Standard Model (SM) based theoretical predictions or by measuring quantities which are highly suppressed within the SM. Searching for small deviations from the SM are performed using large strange, charm or bottom hadron samples, mostly by kaon experiments of B factories. Measurements of highly suppressed quantities, such as CP violation phases and asymmetries in the neutral B{sub s}-meson system or searches for rare B decays, are performed with the hope that new physics effects would be large enough to significantly affect the measured quantities and so, lead to observations of deviations from the SM expectations. The D0 and CDF detectors at the Fermilab Tevatron have each accumulated more that 9 fb{sup -1} of integrated luminosity. The corresponding large datasets enable the two experiments to perform unprecedented studies of heavy flavor hadron properties. We …
Date: October 1, 2011
Creator: Giurgiu, Gavril
System: The UNT Digital Library
Phosphazene Based Additives for Improvement of Safety and Battery Lifetimes in Lithium-Ion Batteries (open access)

Phosphazene Based Additives for Improvement of Safety and Battery Lifetimes in Lithium-Ion Batteries

There need to be significant improvements made in lithium-ion battery technology, principally in the areas of safety and useful lifetimes to truly enable widespread adoption of large format batteries for the electrification of the light transportation fleet. In order to effect the transition to lithium ion technology in a timely fashion, one promising next step is through improvements to the electrolyte in the form of novel additives that simultaneously improve safety and useful lifetimes without impairing performance characteristics over wide temperature and cycle duty ranges. Recent efforts in our laboratory have been focused on the development of such additives with all the requisite properties enumerated above. We present the results of the study of novel phosphazene based electrolytes additives.
Date: October 2011
Creator: Harrup, Mason K.; Gering, Kevin L.; Rollins, Harry W.; Sazhin, Sergiy V.; Benson, Michael T.; Jamison, David K. et al.
System: The UNT Digital Library
ILC Root tracker and vertex detector response to MARS15 simulated backgrounds in muon collider (open access)

ILC Root tracker and vertex detector response to MARS15 simulated backgrounds in muon collider

Results from a simulation of the background for a muon collider, and the response of a silicon tracking detector to this background are presented. The background caused by decays of the 750-GeV muon beams was simulated using the MARS15 program, which included the infrastructure of the beam line elements near the detector and the 10{sup o} nozzles that shield the detector from this background. The ILCRoot framework, along with the Geant4 program, was used to simulate the response of the tracker and vertex silicon detectors to the muon-decay background remaining after the shielding nozzles. Results include the hit distributions in these detectors, the fractions of type-specific background particles producing these hits and illustrate the use of timing of the hits to suppress the muon beam background.
Date: October 1, 2011
Creator: Terentiev, N. K.; Di Benedetto, V.; Gatto, C.; Mazzacane, A.; Mokhov, N. V. & Striganov, S. I.
System: The UNT Digital Library
Status of BNL SRF guns (open access)

Status of BNL SRF guns

N/A
Date: October 16, 2011
Creator: S., Belomestnykh
System: The UNT Digital Library