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FERONIA and wall-associated kinases coordinate defense induced by lignin modification in plant cell walls
Article discusses authors' findings that through genetic screening for suppressors of defense gene induction in the low lignin ccr1-3 mutant of Arabidopsis thaliana, we found that loss of function of the receptor-like kinase FERONIA, although not restoring growth, affected cell wall remodeling and blocked release of elicitor-active pectic polysaccharides as a result of the ccr1-3 mutation. They determine that engineering plant cell walls will require development of ways to bypass endogenous pectin signaling pathways.
Date:
March 10, 2023
Creator:
Liu, Chang; Yu, Hasi; Voxeur, Aline; Rao, Xiaolan & Dixon, R. A.
Object Type:
Article
System:
The UNT Digital Library
POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling
Article presents POSMM, Python-Optimized Standard Markov Model classifier, which is a new incarnation of the Markov model approach to metagenomic sequence analysis. The authors claim that by combining POSMM with ultrafast classifiers such as Kraken2, their complementary strengths can be leveraged to produce higher overall accuracy in metagenomic sequence classification than by either as a standalone classifier. POSMM is a user-friendly and highly adaptable tool designed for broad use by the metagenome scientific community.
Date:
March 8, 2023
Creator:
Burks, David J.; Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type:
Article
System:
The UNT Digital Library
A modified aeroponic system for growing small-seeded legumes and other plants to study root systems
Authors of the article state that various growth systems are available for studying plant root growth and plant–microbe interactions including hydroponics and aeroponics. The aim of their study is to present step-by-step instructions for fabricating an aeroponic system, also called a “caisson,” that has been in use in several legume research labs studying the development of symbiotic nitrogen fixing nodules, but for which detailed directions are not currently available.
Date:
March 3, 2023
Creator:
Cai, Jingya; Veerappan, Vijaykumar; Arildsen, Kate; Sullivan, Catrina; Piechowicz, Megan; Frugoli, Julia et al.
Object Type:
Article
System:
The UNT Digital Library
Overexpression of phospholipid: diacylglycerol acyltransferase in Brassica napus results in changes in lipid metabolism and oil accumulation
Article studying the regulation of lipid metabolism in oilseeds.
Date:
March 31, 2022
Creator:
Fenyk, Stepan; Woodfield, Helen K.; Romsdahl, Trevor B.; Wallington, Emma J.; Bates, Ruth E.; Fell, David A. et al.
Object Type:
Article
System:
The UNT Digital Library
Heterologous Expression of Secondary Metabolite Genes in Trichoderma reesei for Waste Valorization
Article develops Trichoderma reesei (Hypocrea jecorina) as a microbial cell factory for the heterologous expression of fungal secondary metabolites.
Date:
March 9, 2022
Creator:
Shenouda, Mary L.; Ambilika, Maria; Skellam, Elizabeth & Cox, Russell J.
Object Type:
Article
System:
The UNT Digital Library
Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity
Article investigating whether the EPDs of PAD4 and SAG101 contribute to EDS1 dimer functions.
Date:
October 27, 2021
Creator:
Dongus, Joram A.; Bhandari, Deepak D.; Penner, Eva; Lapin, Dmitry; Stolze, Sara C.; Harzen, Anne et al.
Object Type:
Article
System:
The UNT Digital Library
Analysis of transcribed sequences from young and mature zebrafish thrombocytes
Article studying thrombocyte function and development in adult zebrafish. The authors performed single-cell RNA sequencing of the young and mature zebrafish thrombocytes and compared the two datasets for young and mature thrombocyte transcripts.
Date:
September 19, 2021
Creator:
Fallatah, Weam; De, Ronika; Burks, David J.; Azad, Rajeev K. & Jagadeeswaran, Pudur
Object Type:
Article
System:
The UNT Digital Library
Relaxation time approximations in PAOFLOW 2.0
Article presents the implementation of relaxation time approximation models in the calculation of Boltzmann transport in PAOFLOW 2.0 and applies those to model band-structures. In addition, using a self-consistent fitting of the model parameters to experimental conductivity data, the authors provide a flexible tool to extract scattering rates with high accuracy. They illustrate the approximations using simple models and then apply the method to GaAs, Si, Mg₃Sb₂, and CoSb₃.
Date:
March 23, 2022
Creator:
Jayaraj, Anooja; Siloi, Ilaria; Fornari, Marco & Buongiorno Nardelli, Marco
Object Type:
Article
System:
The UNT Digital Library
Drug Solubility Correlation Using the Jouyban–Acree Model: Effects of Concentration Units and Error Criteria
Article investigates the unit and error scale expression effects on the accuracy of the Jouyban–Acree model, in the current study, seventy-nine solubility data sets were collected randomly from the published articles and solute and solvent concentrations in the investigated systems were expressed in various units. Mass fraction, mole fraction, and volume fraction were the employed concentration units for the solvent compositions, and mole fraction, molar, and gram/liter were the investigated concentration units for the solutes. The solubility data, with various solute/solvent concentration units, were correlated using the Jouyban–Acree model, and the accuracy of each model for correlating the data was investigated by calculating different error scales and discussed.
Date:
February 24, 2022
Creator:
Rahimpour, Elaheh; Alvani-Alamdari, Sima; Acree, William E. (William Eugene) & Jouyban, Abolghasem
Object Type:
Article
System:
The UNT Digital Library
Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism
Article evaluating the metabolic and transcriptional responses to AtWRI1 and AtDGAT1 expression in soybean seeds.
Date:
March 20, 2022
Creator:
Arias, Cintia Lucía; Quach, Truyen; Huynh, Tu; Nguyen, Hanh; Moretti, Ademar; Shi, Yu et al.
Object Type:
Article
System:
The UNT Digital Library
MtGSTF7, a TT19-like GST gene, is essential for accumulation of anthocyanins, but not proanthocyanins in Medicago truncatula
Article shows that the mechanism of anthocyanin and proanthocyanin (PA) accumulation in M. truncatula is different from that in A. thaliana, and provides a new target gene for engineering anthocyanins in plants.
Date:
March 16, 2022
Creator:
Wang, Ruoruo; Lu, Nan; Liu, Chenggang; Dixon, R. A.; Wu, Qing; Mao, Yawen et al.
Object Type:
Article
System:
The UNT Digital Library
Developmental changes in lignin composition are driven by both monolignol supply and laccase specificity
Article proposes a model in which, during C-lignin biosynthesis, caffeyl alcohol noncompetitively inhibits oxidation of coniferyl alcohol by cell wall laccases, a process that might limit movement of coniferyl alcohol to the apoplast.
Date:
October 13, 2021
Creator:
Zhou, Chunliu; Wang, Xin; Docampo-Palacios, Maite; Sanders, Brian C.; Engle, Nancy L.; Tschaplinski, Timothy J. et al.
Object Type:
Article
System:
The UNT Digital Library
Flipped and Free: an inverted, active-learning general chemistry course using exclusively OER
Presentation on using a flipped course format and including an open textbook, OpenStax: Chemistry 2e. Flipped courses provide lecture content that is accessible online, and they use class time for active learning activities. It is a part of 2022 University of North Texas Open Access Symposium that was held on March 8, 2022.
Date:
March 8, 2022
Creator:
Petros, Amy K.
Object Type:
Presentation
System:
The UNT Digital Library
Solubility of tadalafil in aqueous mixtures of Transcutol® and PEG 400 revisited: correlation, thermodynamics and preferential solvation
Article analyzing mole fraction solubilities of tadalafil (3) in aqueous mixtures of Transcutol® and PEG 400 at temperatures from 298.15 to 333.15 K following Hildebrand solubility parameters.
Date:
February 16, 2022
Creator:
Shakeel, Faiyaz; Alshehri, Sultan; Ghoneim, Mohammed M.; Martínez, Fleming; Peña, María Á.; Jouyban, Abolghasem et al.
Object Type:
Article
System:
The UNT Digital Library
Gene-based association tests using GWAS summary statistics and incorporating eQTL
Article proposes a powerful and computationally efficient gene-based association test, called Overall. Using extended Simes procedure, Overall aggregates information from three types of traditional gene-based association tests and also incorporates expression quantitative trait locus (eQTL) information into a gene-based association test using GWAS summary statistics. The results show that this newly developed method can identify more significant genes than other methods.
Date:
March 3, 2022
Creator:
Cao, Xuwei; Wang, Xuexia; Zhang, Shuanglin & Sha, Qiuying
Object Type:
Article
System:
The UNT Digital Library
Green synthesis of olefin-linked covalent organic frameworks for hydrogen fuel cell applications
This article creates a green strategy to fabricate a highly crystalline olefin-linked pyrazine-based covalent organic framework (COF) with high robustness and porosity under solvent-free conditions. This study opens up new possibilities for the green synthesis of advanced materials and provides important guidance for the rational design and synthesis of polymeric materials for proton-exchange membrane fuel cell applications.
Date:
March 31, 2021
Creator:
Wang, Zhifang; Yang, Yi; Zhao, Zhengfeng; Zhang, Penghui; Zhang, Yushu; Liu, Jinjin et al.
Object Type:
Article
System:
The UNT Digital Library
Accelerated reliability testing of Cu-Al bimetallic contact by a micropattern corrosion testing platform for wire bond device application
This article presents a novel method of in-situ investigation of the device corrosion process to capture the real time mechanistic information not obtained in standard reliability testing.
Date:
March 26, 2021
Creator:
Ashok Kumar, Goutham Isaac; Alptekin, John; Caperton, Joshua; Salunke, Ashish & Chyan, Oliver Ming-Ren
Object Type:
Article
System:
The UNT Digital Library
An Arabidopsis Oxalyl-CoA Decarboxylase, AtOXC, Is Important for Oxalate Catabolism in Plants
This article identifies, in Arabidopsis, an oxalyl-CoA decarboxylase (AtOXC) that is capable of catalyzing the second step in the proposed pathway of oxalate catabolism.
Date:
March 23, 2021
Creator:
Foster, Justin; Cheng, Ninghui; Paris, Vincent; Wang, Lingfei; Wang, Jin; Wang, Xiaoqiang et al.
Object Type:
Article
System:
The UNT Digital Library
Covalent organic framework nanofluidic membrane as a platform for highly sensitive bionic thermosensation
Article reporting a nanofluidic membrane based on an ionic covalent organic framework (COF) that is capable of intelligently monitoring temperature variations and expressing it in the form of continuous potential differences. This article pioneers a way to explore COFs for mimicking the sophisticated signaling system observed in the nature.
Date:
March 23, 2021
Creator:
Zhang, Pengcheng; Chen, Sifan; Zhu, Changjia; Hou, Linxiao; Xian, Weipeng; Zuo, Xiuhui et al.
Object Type:
Article
System:
The UNT Digital Library
Theoretical modeling study of the reaction H + CF4 → HF + CF3
This article determines the rate constant of the reaction H + CF₄ → HF + CF₃, characterizing its transition state by quantum-chemical methods.
Date:
March 23, 2021
Creator:
Cobos, Carlos J.; Knight, Gary; Marshall, Paul & Troe, Jürgen
Object Type:
Article
System:
The UNT Digital Library
Pyrazinacenes exhibit on-surface oxidation-state-dependent conformational and self-assembly behaviours
This article reports pyrazinacenes containing the dihydro-decaazapentacene and dihydro-octaazatetracene chromophores and compares their properties/functions as a model case at an oxidizing metal substrate.
Date:
March 10, 2021
Creator:
Miklík, David; Mousavi, S. Fatemeh; Burešová, Zuzana; Middleton, Anna; Matsushita, Yoshitaka; Labuta, J. et al.
Object Type:
Article
System:
The UNT Digital Library
A window-space-directed assembly strategy for the construction of supertetrahedron-based zeolitic mesoporous metal–organic frameworks with ultramicroporous apertures for selective gas adsorption
Article presenting a novel window-space-directed assembly strategy for the synthesis of zeolitic mesoporous MOFs with ultramicroporous apertures based on supertetrahedral building units. This article provides an effective and innovative strategy and paves the way for the future design and synthesis of functional, highly connected materials for various applications.
Date:
March 5, 2021
Creator:
Zhang, Lei; Li, Fangfang; You, Jianjun; Hua, Nengbin; Wang, Qianting; Si, Junhui et al.
Object Type:
Article
System:
The UNT Digital Library
Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos
This article uses currently available software and techniques to describe a workflow to analyze ¹³C-labeled isotopologues of the membrane lipid and storage oil lipid intermediate—phosphatidylcholine (PC). Results demonstrated greater ¹³C-isotopic labeling in the cotyledons of developing embryos compared with the embryonic axis.
Date:
March 4, 2021
Creator:
Romsdahl, Trevor B.; Kambhampati, Shrikaar; Koley, Somnath; Yadav, Umesh P.; Alonso, Ana Paula; Allen, Doug K. et al.
Object Type:
Article
System:
The UNT Digital Library
Turning turtle: scaling relationships and self-righting ability in Chelydra serpentina
Article investigating how shell morphology, neck length and self-righting biomechanics scale with body mass during ontogeny in Chelydra serpentina, which uses neck-powered self-righting.
Date:
March 3, 2021
Creator:
Ruhr, Ilan M.; Rose, Kayleigh A. R.; Sellers, William I.; Crossley, Dane A., II & Codd, Jonathan R.
Object Type:
Article
System:
The UNT Digital Library