Understanding the influence of past land use changes on climate is needed to improve regional projections of future climate change and inform debates about the tradeoffs associated with land use decisions. The effects of rapid expansion of irrigated area in the 20th century has remained unclear relative to other land use changes, such as urbanization, that affected a similar total land area. Using spatial and temporal variations in temperature and irrigation extent observed in California, we show that irrigation expansion has had a large cooling effect on summertime average daily daytime temperatures (-0.15 to -0.25 C.decade{sup -1}), which corresponds to a cooling estimated at -2.0 - -3.3 C since the introduction of irrigation practice. Irrigation has negligible effects on nighttime temperatures, leading to a net cooling effect of irrigation on climate (-0.06 to -0.19 C.decade{sup -1}). Stabilization of irrigated area has occurred in California since 1980 and is expected in the near future for most irrigated regions. The suppression of past human-induced greenhouse warming by increased irrigation is therefore likely to slow in the future, and a potential decrease in irrigation may even contribute to a more rapid warming. Changes in irrigation alone are not expected to influence broadscale temperatures, …

In this study, we investigated {gamma}H2AX{sup ser139} and 53BP1{sup ser25}, DNA damage pathway markers, to observe responses to radiation insult. Two Human Mammary Epithelial Cell (HMEC) lines were utilized to research the role of immortalization in DNA damage marker expression, HMEC HMT-3522 (S1) with an infinite lifespan, and a subtype of HMEC 184 (184V) with a finite lifespan. Cells were irradiated with 50 cGy X-rays, fixed with 4% paraformaldehyde after 1 hour repair at 37 C, and processed through immunofluorescence. Cells were visualized with a fluorescent microscope and images were digitally captured using Image-Pro Plus software. The 184V irradiated cells exhibited a more positive punctate response within the nucleus for both DNA damage markers compared to the S1 irradiated cells. We will expand the dose and time course in future studies to augment the preliminary data from this research. It is important to understand whether the process of transformation to immortalization compromises the DNA damage sensor and repair process proteins of HMECs in order to understand what is 'normal' and to evaluate the usefulness of cell lines as experimental models.

The analysis of surface heat fluxes and sounding profiles from SHEBA indicated possible significant effects of subsidence on the structure of stably-stratified ABLs (Mirocha et al. 2005). In this study the influence of the large-scale subsidence rate on the stably stratified atmospheric boundary layer (ABL) over the Arctic Ocean during clear sky, winter conditions is investigated using a large-eddy simulation model. Simulations are conducted while varying the subsidence rate between 0, 0.001 and 0.002 ms{sup -1}, and the resulting quasi-equilibrium ABL structure and evolution are examined. Simulations conducted without subsidence yield ABLs that are deeper, more strongly mixed, and cool much more rapidly than were observed. The addition of a small subsidence rate significantly improves agreement between the simulations and observations regarding the ABL height, potential temperature profiles and bulk heating rates. Subsidence likewise alters the shapes of the surface-layer flux, stress and shear profiles, resulting in increased vertical transport of heat while decreasing vertical momentum transport. A brief discussion of the relevance of these results to parameterization of the stable ABL under subsiding conditions in large-scale numerical weather and climate prediction models is presented.

Time-of-flight secondary ion mass spectrometry (ToF-SIMS) is employed to examine specific features observed on a polycrystalline depleted uranium sample after exposure to high purity D{sub 2} gas. The ToF-SIMS investigation, being the first of its kind on uranium, investigates a site where the deuterated form of uranium hydride (UD{sub 3}) is clearly observed to have broken through the thin, air-formed oxide. Density functional theory calculations have been performed, which confirm the stability of, and also assign structural geometries to, the various uranium containing fragments observed with SIMS. An inclusion site was also investigated using ToF-SIMS, and these data suggest that the edges of such inclusions exhibit increased D ion, and hence H ion, diffusion when compared to the surrounding surface oxide. These results offer support to the previously published hypotheses that inclusion sites on uranium surfaces exhibit an increased probability to form hydride sites under H{sub 2} exposure.

Scanning white beam X-ray microdiffraction has been used to study the heterogeneous grain deformation in a polycrystalline Mg alloy (MgAZ31). The high spatial resolution achieved on beamline 7.3.3 at the Advanced Light Source provides a unique method to measure the elastic strain and orientation of single grains as a function of applied load. To carry out in-situmeasurements a light weight (~;;0.5kg) tensile stage, capable of providing uniaxial loads of up to 600kg, was designed to collect diffraction data on the loading and unloading cycle. In-situ observation of the deformation process provides insight about the crystallographic deformation mode via twinning and dislocation slip.

It is a common practice to estimate site desorption rate from crystal surfaces with an Arrhenius expression of the form v{sub eff} exp(-{Delta}E/k{sub B}T), where {Delta}E is an activation barrier to desorb and v{sub eff} is an effective vibrational frequency {approx} 10{sup 12} sec{sup -1}. However, such a formula can lead to several to many orders of magnitude underestimation of sublimation rates in molecular crystals due to internal degrees of freedom. We carry out a quantitative comparison of two energetic molecular crystals with crystals of smaller entities like ice and Argon (solid) and uncover the errors involved as a function of molecule size. In the process, we also develop a formal definition of v{sub eff} and an accurate working expression for equilibrium vapor pressure.

Devices are increasingly vulnerable to soft errors as their feature sizes shrink. Previously, soft error rates were significant primarily in space and high-atmospheric computing. Modern architectures now use features so small at sufficiently low voltages that soft errors are becoming important even at terrestrial altitudes. Due to their large number of components, supercomputers are particularly susceptible to soft errors. Since many large scale parallel scientific applications use iterative linear algebra methods, the soft error vulnerability of these methods constitutes a large fraction of the applications overall vulnerability. Many users consider these methods invulnerable to most soft errors since they converge from an imprecise solution to a precise one. However, we show in this paper that iterative methods are vulnerable to soft errors, exhibiting both silent data corruptions and poor ability to detect errors. Further, we evaluate a variety of soft error detection and tolerance techniques, including checkpointing, linear matrix encodings, and residual tracking techniques.

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Aliphatic urethane polymers have been synthesized and characterized, using monomers with high molecular symmetry, in order to form amorphous networks with very uniform supermolecular structures which can be used as photo-thermally actuable shape memory polymers (SMPs). The monomers used include hexamethylene diisocyanate (HDI), trimethylhexamethylenediamine (TMHDI), N,N,N{prime},N{prime}-tetrakis(hydroxypropyl)ethylenediamine (HPED), triethanolamine (TEA), and 1,3-butanediol (BD). The new polymers were characterized by solvent extraction, NMR, XPS, UV/VIS, DSC, DMTA, and tensile testing. The resulting polymers were found to be single phase amorphous networks with very high gel fraction, excellent optical clarity, and extremely sharp single glass transitions in the range of 34 to 153 C. Thermomechanical testing of these materials confirms their excellent shape memory behavior, high recovery force, and low mechanical hysteresis (especially on multiple cycles), effectively behaving as ideal elastomers above T{sub g}. We believe these materials represent a new and potentially important class of SMPs, and should be especially useful in applications such as biomedical microdevices.

Single cell patterning holds important implications forbiology, biochemistry, biotechnology, medicine, and bioinformatics. Thechallenge for single cell patterning is to produce small islands hostingonly single cells and retaining their viability for a prolonged period oftime. This study demonstrated a surface engineering approach that uses acovalently bound short peptide as a mediator to pattern cells withimproved single cell adhesion and prolonged cellular viabilityon goldpatterned SiO2 substrates. The underlying hypothesis is that celladhesion is regulated bythe type, availability, and stability ofeffective cell adhesion peptides, and thus covalently bound shortpeptides would promote cell spreading and, thus, single cell adhesion andviability. The effectiveness of this approach and the underlyingmechanism for the increased probability of single cell adhesion andprolonged cell viability by short peptides were studied by comparingcellular behavior of human umbilical cord vein endothelial cells on threemodelsurfaces whose gold electrodes were immobilized with fibronectin,physically adsorbed Arg-Glu-Asp-Val-Tyr, and covalently boundLys-Arg-Glu-Asp-Val-Tyr, respectively. The surface chemistry and bindingproperties were characterized by reflectance Fourier transform infraredspectroscopy. Both short peptides were superior to fibronectin inproducing adhesion of only single cells, whereas the covalently boundpeptide also reduced apoptosis and necrosisof adhered cells. Controllingcell spreading by peptide binding domains to regulate apoptosis andviability represents a fundamental mechanism in cell-materialsinteraction and provides an …

We propose a model for 1/f flux noise in superconducting devices (f is frequency). The noise is generated by the magnetic moments of electrons in defect states which they occupy for a wide distribution of times before escaping. A trapped electron occupies one of the two Kramers-degenerate ground states, between which the transition rate is negligible at low temperature. As a result, the magnetic moment orientation is locked. Simulations of the noise produced by a plausible density of randomly oriented defects yield 1/f noise magnitudes in good agreement with experiments.

We present a summary of the hadronic cross section measurements performed with BABAR at the PEP-II collider via radiative return. BABAR has performed measurements of exclusive final states containing 3, 4 and 6 hadrons via this complementary method, as well as a measurement of the proton form factor.

This paper focuses on the evolution of the various operational aspects of the Community Environmental Monitoring Program (CEMP) network following the transfer of program administration from the U.S. Environmental Protection Agency (EPA) to the Desert Research Institute (DRI) of the Nevada System of Higher Education in 1999-2000. The CEMP consists of a network of 29 fixed radiation and weather monitoring stations located in Nevada, Utah, and California. Its mission is to involve stakeholders directly in monitoring for airborne radiological releases to the off site environment as a result of past or ongoing activities on the Nevada Test Site (NTS) and to make data as transparent and accessible to the general public as feasible. At its inception in 1981, the CEMP was a cooperative project of the U.S. Department of Energy (DOE), DRI, and EPA. In 1999-2000, technical administration of the CEMP transitioned from EPA to DRI. Concurrent with and subsequent to this transition, station and program operations underwent significant enhancements that furthered the mission of the program. These enhancements included the addition of a full suite of meteorological instrumentation, state-of-the-art electronic data collectors, on-site displays, and communications hardware. A public website was developed. Finally, the DRI developed a mobile monitoring …

Numerical groundwater models are based on conceptualizations of hydrogeologic systems that are by necessity developed from limited information and therefore are simplifications of real conditions. Each aspect (e.g. recharge, hydrostratigraphy, boundary conditions) of the groundwater model is often based on a single conceptual model that is considered to be the best representation given the available data. However, the very nature of their construction means that each conceptual model is inherently uncertain and the available information may be insufficient to refute plausible alternatives, thereby raising the possibility that the flow model is underestimating overall uncertainty. In this study we use the Death Valley Regional Flow System model developed by the U.S. Geological Survey as a framework to predict regional groundwater flow southward into Yucca Flat on the Nevada Test Site. An important aspect of our work is to evaluate the uncertainty associated with multiple conceptual models of groundwater recharge and subsurface hydrostratigraphy and quantify the impacts of this uncertainty on model predictions. In our study, conceptual model uncertainty arises from two sources: (1) alternative interpretations of the hydrostratigraphy in the northern portion of Yucca Flat where, owing to sparse data, the hydrogeologic system can be conceptualized in different ways, and (2) …

''Hidden'' geothermal systems are systems devoid of obvious surface hydrothermal manifestations. Emissions of moderate-to-low solubility gases may be one of the primary near-surface signals from these systems. We investigate the potential for CO2 detection and monitoring below and above ground in the near-surface environment as an approach to exploration targeting hidden geothermal systems. We focus on CO2 because it is the dominant noncondensible gas species in most geothermal systems and has moderate solubility in water. We carried out numerical simulations of a CO2 migration scenario to calculate the magnitude of expected fluxes and concentrations. Our results show that CO2 concentrations can reach high levels in the shallow subsurface even for relatively low geothermal source CO2 fluxes. However, once CO2 seeps out of the ground into the atmospheric surface layer, winds are effective at dispersing CO2 seepage. In natural ecological systems in the absence of geothermal gas emissions, near-surface CO2 fluxes and concentrations are predominantly controlled by CO2 uptake by photosynthesis, production by root respiration, microbial decomposition of soil/subsoil organic matter, groundwater degassing, and exchange with the atmosphere. Available technologies for monitoring CO2 in the near-surface environment include the infrared gas analyzer, the accumulation chamber method, the eddy covariance method, hyperspectral …

Spent nuclear fuels from foreign and domestic research and test reactors are being returned to the Savannah River Site for storage with other nuclear materials in the L-Basin. Recent efforts have consolidated the fuel storage systems and L-Basin has become the SRS site for wet storage of spent nuclear fuels. Corrosion surveillance of coupons in this basin is being performed to provide assurance of safe storage of spent fuel. This paper describes the highlights of recent studies on these aluminum coupons after immersion for more than 7 years in L-Basin. Selected coupons were metallurgically characterized to establish the existence of general corrosion and pitting. Minor pitting corrosion was observed on the intentionally galvanically coupled samples and creviced coupons, thus demonstrating that localized concentration cells were formed during the exposure period. In these cases, the susceptibility to pitting was not attributed to aggressive basin water chemistry but to localized conditions--crevices and galvanic coupling--that allowed the development of oxygen and/or metal ion concentration cells that produced locally aggressive waters. General corrosion was also observed on some of the coupons. None of the coupons were pre-oxidized to form a protective oxide as compared to the spent fuel which was oxidized during reactor operations. …

A new parsimony analysis of 27 complete mitochondrial genomic sequences is conducted to investigate the phylogenetic relationships of plethodontid salamanders. This analysis focuses on the amount of character conflict between phylogenetic trees recovered from newly conducted parsimony searches and the Bayesian and maximum likelihood topology reported by Mueller et al. (2004, PNAS, 101, 13820-13825). Strong support for Hemidactylium as the sister taxon to all other plethodontids is recovered from parsimony analyses. Plotting area relationships on the most parsimonious phylogenetic tree suggests that eastern North America is the origin of the family Plethodontidae supporting the ''Out of Appalachia'' hypothesis. A new taxonomy that recognizes clades recovered from phylogenetic analyses is proposed.

In this paper, the adaptive optics (AO) system at the W.M. Keck Observatory is characterized. The authors calculate the error budget of the Keck AO system operating in natural guide star mode with a near infrared imaging camera. By modeling the control loops and recording residual centroids, the measurement noise and band-width errors are obtained. The error budget is consistent with the images obtained. Results of sky performance tests are presented: the AO system is shown to deliver images with average Strehl ratios of up to 0.37 at 1.58 {micro}m using a bright guide star and 0.19 for a magnitude 12 star.

Enhancements are described for an approach that unifies edge preserving smoothing with segmentation of time sequences of volumetric images, based on differential edge detection at multiple spatial and temporal scales. Potential applications of these 4-D methods include segmentation of respiratory gated positron emission tomography (PET) transmission images to improve accuracy of attenuation correction for imaging heart and lung lesions, and segmentation of dynamic cardiac single photon emission computed tomography (SPECT) images to facilitate unbiased estimation of time-activity curves and kinetic parameters for left ventricular volumes of interest. Improved segmentation of lung surfaces in simulated respiratory gated cardiac PET transmission images is achieved with a 4-D edge detection operator composed of edge preserving 1-D operators applied in various spatial and temporal directions. Smoothing along the axis of a 1-D operator is driven by structure separation seen in the scale-space fingerprint, rather than by image contrast. Spurious noise structures are reduced with use of small-scale isotropic smoothing in directions transverse to the 1-D operator axis. Analytic expressions are obtained for directional derivatives of the smoothed, edge preserved image, and the expressions are used to compose a 4-D operator that detects edges as zero-crossings in the second derivative in the direction of the …

The surface films formed on commercial LiNi0.8Co0.15Al0.05O2 cathodes (ATD Gen2) charged from 3.75V to 4.2V vs. Li/Li+ in EC:DEC - 1M LiPF6 were analyzed using ex-situ Fourier transform infrared spectroscopy (FTIR) with the attenuated total reflection (ATR) technique. A surface layer of Li2CO3 is present on the virgin cathode, probably from reaction of the active material with air during the cathode preparation procedure. The Li2CO3 layer disappeared even after soaking in the electrolyte, indicating that the layer dissolved into the electrolyte possibly even before potential cycling of the electrode. IR features only from the binder (PVdF) and a trace of polyamide from the Al current collector were observed on the surfaces of cathodes charged to below 4.2 V, i.e., no surface species from electrolyte oxidation. Some new IR features were, however, found on the cathode charged to 4.2 V and higher. An electrolyte oxidation product was observed that appeared to contain dicarbonyl anhydride and (poly)ester functionalities. The reaction appears to be an indirect electrochemical oxidation with overcharging (removal of > 0.6 Li ions) destabilizing oxygen in the oxide lattice resulting in oxygen transfer to the solvent molecules.

Circular dichroism and fluorescence polarization anisotropy are important tools for characterizing biomolecular systems. Both are used extensively in kinetic experiments involving stopped- or continuous flow systems as well as titrations and steady-state spectroscopy. This paper presents the theory for determining circular dichroism and fluorescence polarization anisotropy simultaneously, thus insuring the two parameters are recorded under exactly the same conditions and at exactly the same time in kinetic experiments. The approach to measuring circular dichroism is that used in almost all conventional dichrographs. Two arrangements for measuring fluorescence polarization anisotropy are described. One uses a single fluorescence detector and signal processing with a lock-in amplifier that is similar to the measurement of circular dichroism. The second approach uses classic ''T'' format detection optics, and thus can be used with conventional photon-counting detection electronics. Simple extensions permit the simultaneous measurement of the absorption and excitation intensity corrected fluorescence intensity.

Astrophysics has traditionally been pursued at astronomical observatories and on theorists' computers. Observations record images from space, and theoretical models are developed to explain the observations. A component often missing has been the ability to test theories and models in an experimental setting where the initial and final states are well characterized. Intense lasers are now being used to recreate aspects of astrophysical phenomena in the laboratory, allowing the creation of experimental testbeds where theory and modeling can be quantitatively tested against data. We describe here several areas of astrophysics--supernovae, supernova remnants, gamma-ray bursts, and giant planets--where laser experiments are under development to test our understanding of these phenomena.

The urgent need for high-efficiency, low-emission energy utilization technologies for transportation, power generation, and manufacturing processes presents difficult challenges to the combustion research community. The required predictive understanding requires systematic knowledge across the full range of physical scales involved in combustion processes--from the properties and interactions of individual molecules to the dynamics and products of turbulent multi-phase reacting flows. Innovative experimental techniques and computational approaches are revolutionizing the rate at which chemical science research can produce the new information necessary to advance our combustion knowledge. But the increased volume and complexity of this information often makes it even more difficult to derive the systems-level knowledge we need. Combustion researchers have responded by forming interdisciplinary communities intent on sharing information and coordinating research priorities. Such efforts face many barriers, however, including lack of data accessibility and interoperability, missing metadata and pedigree information, efficient approaches for sharing data and analysis tools, and the challenges of working together across geography, disciplines, and a very diverse spectrum of applications and funding. This challenge is especially difficult for those developing, sharing and/or using detailed chemical models of combustion to treat the oxidation of practical fuels. This is a very complex problem, and the development of …

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