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Bioinformatics tools for cancer metabolomics (open access)

Bioinformatics tools for cancer metabolomics

This review focuses on the use of different bioinformatics tools in cancer metabolomics studies.
Date: January 12, 2011
Creator: Blekherman, Grigoriy; Laubenbacher, Reinhard; Cortes, Diego F.; Mendes, Pedro; Torti, Frank M.; Akman, Steven et al.
System: The UNT Digital Library
Family Perspectives on the Hospice Experience in Adult Family Homes (open access)

Family Perspectives on the Hospice Experience in Adult Family Homes

Article on family perspectives on the hospice experience in adult family homes.
Date: January 13, 2011
Creator: Washington, Karla T.; Oliver, Debra Parker; Demiris, George; Wittenberg-Lyles, Elaine & Shaunfield, Sara
System: The UNT Digital Library
Spatial Distribution of Solutes in Aquifer Outcrop Zones along the Brazos River, East-Central Texas (open access)

Spatial Distribution of Solutes in Aquifer Outcrop Zones along the Brazos River, East-Central Texas

Article discussing the spatial distribution of solutes in aquifer outcrop zones along the Brazos River, East-Central Texas.
Date: January 2011
Creator: Hudak, Paul F.
System: The UNT Digital Library
Contrasting Perceptions of STEM Content and Careers (open access)

Contrasting Perceptions of STEM Content and Careers

This article presents a second year analysis of baseline attitudinal data gathered from a National Science Foundation Innovative Technology Experiences for Students and Teachers project concerning contrasts between the perceptions of practicing professionals and students toward science, technology, engineering, and mathematics (STEM) disciplines and careers.
Date: January 2011
Creator: Knezek, Gerald; Christensen, Rhonda & Tyler-Wood, Tandra L.
System: The UNT Digital Library
HANFORD SITE CENTRAL PLATEAU CLEANUP COMPLETION STRATEGY (open access)

HANFORD SITE CENTRAL PLATEAU CLEANUP COMPLETION STRATEGY

Cleanup of the Hanford Site is a complex and challenging undertaking. The U.S. Department of Energy (DOE) has developed a comprehensive vision for completing Hanford's cleanup mission including transition to post-cleanup activities. This vision includes 3 principle components of cleanup: the {approx}200 square miles ofland adjacent to the Columbia River, known as the River Corridor; the 75 square miles of land in the center of the Hanford Site, where the majority of the reprocessing and waste management activities have occurred, known as the Central Plateau; and the stored reprocessing wastes in the Central Plateau, the Tank Wastes. Cleanup of the River Corridor is well underway and is progressing towards completion of most cleanup actions by 2015. Tank waste cleanup is progressing on a longer schedule due to the complexity of the mission, with construction of the largest nuclear construction project in the United States, the Waste Treatment Plant, over 50% complete. With the progress on the River Corridor and Tank Waste, it is time to place increased emphasis on moving forward with cleanup of the Central Plateau. Cleanup of the Hanford Site has been proceeding under a framework defmed in the Hanford Federal Facility Agreement and Consent Order (Tri-Party Agreement). …
Date: January 14, 2011
Creator: Bergman, T. B.
System: The UNT Digital Library
Origin of the anomalous long lifetime of 14C (open access)

Origin of the anomalous long lifetime of 14C

None
Date: January 31, 2011
Creator: Maris, P.; Vary, J. P.; Navratil, P.; Ormand, W. E. & Nam, H.
System: The UNT Digital Library
AUTOMATED WATER LEVEL MEASUREMENTS IN SMALL-DIAMETER AQUIFER TUBES (open access)

AUTOMATED WATER LEVEL MEASUREMENTS IN SMALL-DIAMETER AQUIFER TUBES

Groundwater contaminated with hexavalent chromium, strontium-90, and uranium discharges into the Columbia River along approximately 16 km (10 mi) of the shoreline. Various treatment systems have and will continue to be implemented to eliminate the impact of Hanford Site contamination to the river. To optimize the various remediation strategies, it is important to understand interactions between groundwater and the surface water of the Columbia River. An automated system to record water levels in aquifer sampling tubes installed in the hyporheic zone was designed and tested to (1) gain a more complete understanding of groundwater/river water interactions based on gaining and losing conditions ofthe Columbia River, (2) record and interpret data for consistent and defensible groundwater/surface water conceptual models that may be used to better predict subsurface contaminant fate and transport, and (3) evaluate the hydrodynamic influence of extraction wells in an expanded pump-and-treat system to optimize the treatment system. A system to measure water levels in small-diameter aquifer tubes was designed and tested in the laboratory and field. The system was configured to allow manual measurements to periodically calibrate the instrument and to permit aquifer tube sampling without removing the transducer tube. Manual measurements were collected with an e-tape designed …
Date: January 14, 2011
Creator: Petersen, S. W.; Edrington, R. S.; Manhood, R. O. & VanMiddlesworth, P. E.
System: The UNT Digital Library
Egg Yolk Environment Differentially Influences Physiological and Morphological Development of Broiler and Layer Chicken Embryos (open access)

Egg Yolk Environment Differentially Influences Physiological and Morphological Development of Broiler and Layer Chicken Embryos

This article investigates the effect of breed-specific yolk composition on embryonic broiler and layer chicken phenotypes, using an ex ovo, xenobiotic technique that allows the transfer of broiler and layer chicken embryos from their natural yolks to novel yolk environments.
Date: January 26, 2011
Creator: Ho, Dao H.; Reed, Wendy L. & Burggren, Warren W.
System: The UNT Digital Library
Synthesis, structure elucidation and redox properties of 99Tc complexes of lacunary Wells Dawson polyoxometalates: insights into molecular 99Tc - metal oxide interactions (open access)

Synthesis, structure elucidation and redox properties of 99Tc complexes of lacunary Wells Dawson polyoxometalates: insights into molecular 99Tc - metal oxide interactions

The isotope 99Tc (beta max: 250 keV, half-life: 2 x 105 year) is an abundant product of uranium-235 fission in nuclear reactors and is present throughout the radioactive waste stored in underground tanks at Hanford and Savannah River. Understanding and controlling the extensive redox chemistry of 99Tc is important to identify tunable strategies to separate 99Tc from spent fuel and from waste tanks and once separated, to identify and develop an appropriately stable waste-form for 99Tc. Polyoxometalates (POMs), nanometer sized models for metal oxide solid-state materials, are used in this study to provide a molecular level understanding of the speciation and redox chemistry of incorporated 99Tc. In this study, 99Tc complexes of the (alpha 2-P2W17O61)10- and (alpha 1-P2W17O61)10- isomers were prepared. Ethylene glycol was used as a"transfer ligand" to minimize the formation of TcO2 cdot xH2O. The solution structures, formulations, and purity of TcVO(alpha 1/alpha 2-P2W17O61)7- were determined by multinuclear NMR. X-ray Absorption Spectroscopy of the complexes are in agreement with the formulation and structures determined from 31P and 183W NMR. Preliminary electrochemistry results are consistent with the EXAFS results, showing a facile reduction of the TcVO(alpha 1-P2W17O61)7- species compared to the TcVO(alpha 2-P2W17O61)7- analog. The alpha1- defect is unique …
Date: January 10, 2011
Creator: McGregor, Donna; Burton-Pye, Benjamin P.; Howell, Robertha C.; Mbomekalle, Israel M.; Lukens, Wayne W., Jr.; Bian, Fang et al.
System: The UNT Digital Library
Force Field Parameter Estimation of Functional Perfluoropolyether Lubricants (open access)

Force Field Parameter Estimation of Functional Perfluoropolyether Lubricants

The head disk interface in hard disk drive can be considered one of the hierarchical multiscale systems, which require the hybridization of multiscale modeling methods with coarse-graining procedure. However, the fundamental force field parameters are required to enable the coarse-graining procedure from atomistic/molecular scale to mesoscale models .In this paper, we investigate beyond molecular level and perform ab-initio calculations to obtain the force field parameters. Intramolecular force field parameters for the Zdol and Ztetraol were evaluated with truncated PFPE molecules to allow for feasible quantum calculations while still maintaining the characteristic chemical structure of the end groups. Using the harmonic approximation to the bond and angle potentials, the parameters were derived from the Hessian matrix, and the dihedral force constants are fit to the torsional energy profiles generated by a series of constrained molecular geometry optimization.
Date: January 1, 2011
Creator: Smith, R.; Chung, P. S.; Steckel, J. A.; Jhon, M. S. & Biegler, L. T.
System: The UNT Digital Library
MANAGING ENGINEERING ACTIVITIES FOR THE PLATEAU REMEDIATION CONTRACT - HANFORD (open access)

MANAGING ENGINEERING ACTIVITIES FOR THE PLATEAU REMEDIATION CONTRACT - HANFORD

In 2008, the primary Hanford clean-up contract transitioned to the CH2MHill Plateau Remediation Company (CHPRC). Prior to transition, Engineering resources assigned to remediation/Decontamination and Decommissioning (D&D) activities were a part of a centralized engineering organization and matrixed to the performing projects. Following transition, these resources were reassigned directly to the performing project, with a loose matrix through a smaller Central Engineering (CE) organization. The smaller (10 FTE) central organization has retained responsibility for the overall technical quality of engineering for the CHPRC, but no longer performs staffing and personnel functions. As the organization has matured, there are lessons learned that can be shared with other organizations going through or contemplating performing a similar change. Benefits that have been seen from the CHPRC CE organization structure include the following: (1) Staff are closely aligned with the 'Project/facility' that they are assigned to support; (2) Engineering priorities are managed to be consistent with the 'Project/facility' priorities; (3) Individual Engineering managers are accountable for identifying staffing needs and the filling of staffing positions; (4) Budget priorities are managed within the local organization structure; (5) Rather than being considered a 'functional' organization, engineering is considered a part of a line, direct funded organization; (6) …
Date: January 14, 2011
Creator: Kronvall, C. M.
System: The UNT Digital Library
High-Performance Language Interoperability for Scientific Computing through Babel (open access)

High-Performance Language Interoperability for Scientific Computing through Babel

None
Date: January 10, 2011
Creator: Epperly, Thomas G. W.; Kumfert, Gary; Dahlgren, Tamara; Ebner, Dietmar; Leek, Jim; Kohn, Scott et al.
System: The UNT Digital Library