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2002 Gordon Research Conference on Molecular Evolution (open access)

2002 Gordon Research Conference on Molecular Evolution

Emphasis was placed on current unpublished research and discussion of the future target areas in this field.
Date: January 18, 2002
Creator: unknown
System: The UNT Digital Library

Ab Initio Calculations and Kinetic Modeling of Thermal Conversion of Methyl Chloride: Implications for Gasification of Biomass

This article investigates the thermal conversion of CH₃Cl.
Date: November 8, 2017
Creator: Singla, Mellika; Rasmussen, Morten Lund; Hashemi, Hamid; Wu, Hao; Glarborg, Peter; Pelucchi, Matteo et al.
System: The UNT Digital Library
Achieving Finite Element Mesh Quality via Optimization of the Jacobian Matrix Norm and Associated Quantities, Part 1 - A Framework for Surface Mesh Optimization (open access)

Achieving Finite Element Mesh Quality via Optimization of the Jacobian Matrix Norm and Associated Quantities, Part 1 - A Framework for Surface Mesh Optimization

Structured mesh quality optimization methods are extended to optimization of unstructured triangular, quadrilateral, and mixed finite element meshes. N"ew interpretations of well-known nodally-bssed objective functions are made possible using matrices and matrix norms. The matrix perspective also suggests several new objective functions. Particularly significant is the interpretation of the Oddy metric and the Smoothness objective functions in terms of the condition number of the metric tensor and Jacobian matrix, respectively. Objective functions are grouped according to dimensionality to form weighted combinations. A simple unconstrained local optimum is computed using a modiiied N-ewton iteration. The optimization approach was implemented in the CUBIT mesh generation code and tested on several problems. Results were compared against several standard element-based quaIity measures to demonstrate that good mesh quality can be achieved with nodally-based objective functions.
Date: January 18, 1999
Creator: Knupp, P.M.
System: The UNT Digital Library
Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute (open access)

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute

Today, carbon-rich fossil fuels, primarily oil, coal, and natural gas, provide 85% of the energy consumed in the U.S. As world demand increases, oil reserves may become rapidly depleted. Fossil fuel use increases CO{sub 2} emissions and raises the risk of global warming. The high energy content of liquid hydrocarbon fuels makes them the preferred energy source for all modes of transportation. In the U.S. alone, transportation consumes >13.8 million barrels of oil per day and generates 0.5 gigatons of carbon per year. This release of greenhouse gases has spurred research into alternative, nonfossil energy sources. Among the options (nuclear, concentrated solar thermal, geothermal, hydroelectric, wind, solar, and biomass), only biomass has the potential to provide a high-energy-content transportation fuel. Biomass is a renewable resource that can be converted into carbon-neutral transporation fuels. Currently, biofuels such as ethanol are produced largely from grains, but there is a large, untapped resource (estimated at more than a billion tons per year) of plant biomass that could be utilized as a renewable, domestic source of liquid fuels. Well-established processes convert the starch content of the grain into sugars that can be fermented to ethanol. The energy efficiency of starch-based biofuels is however not …
Date: January 18, 2008
Creator: Blanch, Harvey; Adams, Paul; Andrews-Cramer, Katherine; Frommer, Wolf; Simmons, Blake & Keasling, Jay
System: The UNT Digital Library
Automatic segmentation of histological structures in normal and neoplastic mammary gland tissue sections (open access)

Automatic segmentation of histological structures in normal and neoplastic mammary gland tissue sections

In this paper we present a scheme for real time segmentation of histological structures in microscopic images of normal and neoplastic mammary gland sections. Paraffin embedded or frozen tissue blocks are sliced, and sections are stained with hematoxylin and eosin (H&E). The sections are then imaged using conventional bright field microscopy. The background of the images is corrected by arithmetic manipulation using a ''phantom.'' Then we use the fast marching method with a speed function that depends on the brightness gradient of the image to obtain a preliminary approximation to the boundaries of the structures of interest within a region of interest (ROI) of the entire section manually selected by the user. We use the result of the fast marching method as the initial condition for the level set motion equation. We run this last method for a few steps and obtain the final result of the segmentation. These results can be connected from section to section to build a three-dimensional reconstruction of the entire tissue block that we are studying.
Date: January 18, 2003
Creator: Fernandez-Gonzalez, Rodrigo; Deschamps, Thomas; Idica, Adam K.; Malladi, Ravi & Ortiz de Solorzano, Carlos
System: The UNT Digital Library
Axial Tomography From Digitized Real Time Radiography (open access)

Axial Tomography From Digitized Real Time Radiography

Axial tomography from digitized real time radiographs provides a useful tool for industrial radiography and tomography. The components of this system are: x-ray source, image intensifier, video camera, video line extractor and digitizer, data storage and reconstruction computers. With this system it is possible to view a two dimensional x-ray image in real time at each angle of rotation and select the tomography plane of interest by choosing which video line to digitize. The digitization of a video line requires less than a second making data acquisition relatively short. Further improvements on this system are planned and initial results are reported.
Date: January 18, 1985
Creator: Zolnay, Andrew S.; McDonald, William M.; Doupont, Paul A.; McKinney, Ronald L. & Lee, Maria M.
System: The UNT Digital Library
Bi3+ Luminescence in ABiO2Cl (A = Sr, Ba) and BaBiO2Br (open access)

Bi3+ Luminescence in ABiO2Cl (A = Sr, Ba) and BaBiO2Br

Trivalent bismuth luminescence is reported in three Sillenbismuth oxyhalide phases, SrBiO2Cl, BaBiO2Cl, and BaBiO2Br. Thesecompounds exhibit Bi 6s6->6 s2 emission under UV and X-ray radiation.At room temperature, BaBiO2Cl shows the most intense light emission, withspectral and decay properties similar to those found in Bi4Ge3O12 (BGO).At low temperatures, each phase show an increase in the photoluminescenceintensities and a narrowing of the emission peaks. In contrast to thetemperature dependence of BGO, X-ray excited luminescence intensities ofall three phases remain relatively constant throughout the temperaturerange 10 - 295 K. This result indicates that the Sillen phases undergoless thermal quenching than BGO. The low temperature and room temperatureradio-luminescence decay times were determined from pulsed x-raymeasurements. At room temperature, SrBiO2Cl exhibits faster decays thanBGO, while, BaBiO2Cl and BaBiO2Br have decay times similar toBGO.
Date: January 18, 2007
Creator: Porter-Chapman, Yetta D.; Bourret-Courchesne, Edith E. & Derenzo,Stephen E.
System: The UNT Digital Library
The CDF-II silicon tracking system (open access)

The CDF-II silicon tracking system

The CDFII silicon tracking system, SVX, for Run II of the Fermilab Tevatron has up to 8 cylindrical layers with average radii spanning from {approx} (1.5 to 28.7) cm, and lengths ranging from {approx} (90 to 200) cm for a total active-area of {approx} 6 m{sup 2} and {approx} 7.2 x 10{sup 5} readout channels. SVX will improve the CDFII acceptance and efficiency for both B and high-Pt physics dependent upon b-tagging. Along with the description of the SVX we report some alignment survey data from the SVX assembly phase and the actual status of the alignment as it results from the offline data analysis. The problems encountered are also reviewed.
Date: January 18, 2002
Creator: al., F. Palmonari et
System: The UNT Digital Library
Characterization of prototype BTeV silicon pixel sensors before and after irradiation (open access)

Characterization of prototype BTeV silicon pixel sensors before and after irradiation

We report on measurements performed on silicon pixel sensor prototypes exposed to a 200 MeV proton beam at the Indiana University Cyclotron Facility. The sensors are of n{sup +}/n/p{sup +} type with multi-guard ring structures and p-stop electrode isolation. Electrical characterization of such devices was performed before and after irradiation up to proton fluence of 4 x 10{sup 14} p cm{sup -2}. We tested pixel sensors fabricated from normal and oxygen-enriched silicon wafers and with two different p-stop isolation layouts: common p-stop and individual p-stop.
Date: January 18, 2002
Creator: al., Maria Rita Coluccia et
System: The UNT Digital Library
Commissioning and operation of the CDF silicon detector (open access)

Commissioning and operation of the CDF silicon detector

The CDF-II silicon detector has been partially commissioned and used for taking preliminary physics data. This paper is a report on commissioning and initial operations of the 5.8m{sup 2} silicon detector. This experience can be useful to the large silicon systems that are presently under construction.
Date: January 18, 2002
Creator: D'Auria, S.
System: The UNT Digital Library
Compact neutron generator developement and applications (open access)

Compact neutron generator developement and applications

The Plasma and Ion Source Technology Group at the Lawrence Berkeley National Laboratory has been engaging in the development of high yield compact neutron generators for the last ten years. Because neutrons in these generators are formed by using either D-D, T-T or D-T fusion reaction, one can produce either mono-energetic (2.4 MeV or 14 MeV) or white neutrons. All the neutron generators being developed by our group utilize 13.5 MHz RF induction discharge to produce a pure deuterium or a mixture of deuterium-tritium plasma. As a result, ion beams with high current density and almost pure atomic ions can be extracted from the plasma source. The ion beams are accelerated to {approx}100 keV and neutrons are produced when the beams impinge on a titanium target. Neutron generators with different configurations and sizes have been designed and tested at LBNL. Their applications include neutron activation analysis, oil-well logging, boron neutron capture therapy, brachytherapy, cargo and luggage screening. A novel small point neutron source has recently been developed for radiography application. The source size can be 2 mm or less, making it possible to examine objects with sharper images. The performance of these neutron generators will be described in this paper.
Date: January 18, 2004
Creator: Leung, Ka-Ngo; Reijonen, Jani; Gicquel, Frederic; Hahto, Sami & Lou, Tak-Pui
System: The UNT Digital Library
Coupled Environmental Processes in the Mojave Desert and Implications for ET Covers as Stable Landforms (open access)

Coupled Environmental Processes in the Mojave Desert and Implications for ET Covers as Stable Landforms

Monolayer evapotranspiration (ET) covers are the baseline method for closure of disposal sites for low-level radioactive waste (LLW), mixed LLW, and transuranic (TRU) waste at the Nevada Test Site (NTS). The regulatory timeline is typically 1,000 years for LLW and 10,000 years for TRU waste. Covers for such waste have different technical considerations than those with shorter timelines because they are subject to environmental change for longer periods of time, and because the environmental processes are often coupled. To evaluate these changes, four analog sites (approximately 30, 1,000 to 2,000, 7,000 to 12,500, and 125,000 years in age) on the NTS were analyzed to address the early post-institutional control period (the youngest site), the 1,000-year compliance period for disposal of LLW, and the 10,000-year period for TRU waste. Tests included soil texture, structure, and morphology; surface soil infiltration and hydraulic conductivity; vegetation and faunal surveys; and literature reviews. Separate measurements were made in plant undercanopy and intercanopy areas. The results showed a progressive increase in silt and clay content of surface soils with age. Changes in soil texture and structure led to a fivefold decline in saturated hydraulic conductivity in intercanopy areas, but no change in undercanopies, which were subject …
Date: January 18, 2006
Creator: Shafer, D.; oung, M. Y; Zitzer, S.; McDonald, E. & Caldwell, T.
System: The UNT Digital Library
CRACK TIP OPENING DISPLACEMENT AND ANGLE FOR A GROWING CRACK IN CARBON STEEL (open access)

CRACK TIP OPENING DISPLACEMENT AND ANGLE FOR A GROWING CRACK IN CARBON STEEL

The crack tip opening displacements and angles (CTOD/CTOA) are calculated with finite element method based on the test data of a set of constraint-dependent J-R curves for A285 carbon steel. The values of the CTOD/CTOA are initially high at initiation, but rapidly decrease to a nearly constant value. When the common practice is adopted by using only the constant part of CTOD/CTOA as the fracture criterion, the crack growth behavior is shown to be severely underestimated. However, with a bilinear form of CTOD/CTOA fracture criterion which approximates the initial non-constant portion, the experimental load vs. crack extension curves can be closely predicted. Furthermore, it is demonstrated that the CTOD/CTOA is crack tip constraint dependent. The values of CTOD/CTOA for specimens with various ratios of crack length to specimen width (a/W) are reflected by the J-R curves and their slopes.
Date: January 18, 2005
Creator: LAM, POH-SANG
System: The UNT Digital Library
Crystal extraction of beam from high energy hadron accelerators (open access)

Crystal extraction of beam from high energy hadron accelerators

This paper will report only the results of the crystal extraction experiments at Fermilab and CERN.
Date: January 18, 1999
Creator: Murphy, C. Thornton
System: The UNT Digital Library
Decade of PV Industry R and D Advances in Silicon Module Manufacturing (open access)

Decade of PV Industry R and D Advances in Silicon Module Manufacturing

The US Photovoltaic (PV) industry has made significant technical advances in crystalline silicon (Si) module manufacturing through the PV Manufacturing R and D Project during the past decade. Funded Si technologies in this project have been Czochralski, cast polycrystalline, edge-defined film-fed growth (EFG) ribbon, string ribbon, and Si-film. Specific R and D Si module-manufacturing categories that have shown technical growth and will be discussed are in crystal growth and processing, wafering, cell fabrication, and module manufacturing. These R and D advancements since 1992 have contributed to a 30% decrease in PV manufacturing costs and stimulated a sevenfold increase in PV production capacity.
Date: January 18, 2001
Creator: Symko-Davis, M.; Mitchell, R. L.; Witt, C. E.; Thomas, H. P.; King, R. & Ruby, D. S.
System: The UNT Digital Library
Defect Dependent Elasticity: Nanoindentation as a Probe of Stress-State (open access)

Defect Dependent Elasticity: Nanoindentation as a Probe of Stress-State

Nanoindentation studies reveal that the measured elastic properties of materials can be strongly dependent upon their stress-state and defect structure. Using an interfacial force microscope (IFM), the measured elastic response of 100 nm thick Au films was found to be strongly correlated with the films' stress state and thermal history. Indentation elasticity was also found to vary in close proximity to grain boundaries in thin films and near surface steps on single crystal surfaces. Molecular dynamics simulations suggest that these results cannot be explained by elasticity due only to bond stretching. Instead, the measured elastic properties appear to be a combination of bond and defect compliance representing a composite modulus. We propose that stress concentration arising from the structure of grains, voids and grain boundaries is the source of an additional compliance which is sensitive to the stress state and thermal history of a material. The elastic properties of thin metallic films appear to reflect the collective elastic response of the grains, voids and grain boundaries. These results demonstrate that nanoindentation can be useful as a highly localized probe of stress-state and defect structures.
Date: January 18, 2000
Creator: Jarausch, K. F.; Kiely, J. D.; Houston, Jack E. & Russell, P. E.
System: The UNT Digital Library
Developing models for simulation of pinched-beam dynamics in heavy ion fusion (open access)

Developing models for simulation of pinched-beam dynamics in heavy ion fusion

Hydrodynamic models have been derived by Mark and Yu and by others to describe energetic pinched-beams, such as those used in ion-beam fusion. The closure of the Mark-Yu model is obtained with adiabatic assumptions mathematically analogous to those of Chew, Goldberger, and Low for MHD. The other models treated here use an ideal gas closure and a closure by Newcomb based on an expansion in V/sub th//V/sub z/. Features of these hydrodynamic beam models are compared with a kinetic treatment.
Date: January 18, 1984
Creator: Boyd, J. K.; Mark, J. W. K.; Sharp, W. M. & Yu, S. S.
System: The UNT Digital Library
Develpoment of a one-meter plasma source for heavy ion beam chargeneutralization (open access)

Develpoment of a one-meter plasma source for heavy ion beam chargeneutralization

Highly ionized plasmas are being employed as a medium for charge neutralizing heavy ion beams in order to focus to a small spot size. Calculations suggest that plasma at a density of 1-100 times the ion beam density and at a length {approx} 0.1-1 m would be suitable for achieving a high level of charge neutralization. A radio frequency (RF) source was constructed at the Princeton Plasma Physics Laboratory (PPPL) in support of the joint Neutralized Transport Experiment (NTX) at the Lawrence Berkeley National Laboratory (LBNL) to study ion beam neutralization. Pulsing the source enabled operation at pressures {approx} 10{sup -6} Torr with plasma densities of 10{sup 11} cm{sup -3}. Near 100% ionization was achieved. The plasma was 10 cm in length, but future experiments require a source 1 m long. The RF source does not easily scale to the length. Consequently, large-volume plasma sources based upon ferroelectric ceramics are being considered. These sources have the advantage of being able to increase the length of the plasma and operate at low neutral pressures. The source will utilize the ferroelectric ceramic BaTiO{sub 3} to form metal plasma. A 1 m long section of the drift tube inner surface of NTX will …
Date: January 18, 2005
Creator: Efthimion, Philip C.; Gilson, Erik P.; Grisham, Larry; Davidson, Ronald C.; Yu, Simon; Waldron, William et al.
System: The UNT Digital Library
The dipole observed in the COBE DMR 4 year data (open access)

The dipole observed in the COBE DMR 4 year data

None
Date: January 18, 1996
Creator: Lineweaver, C. H.; Tenorio, L.; Smoot, G. F. & Keegstra, P.
System: The UNT Digital Library
DNA repair efficiency in germ cells and early mouse embryos and consequences for radiation-induced transgenerational genomic damage (open access)

DNA repair efficiency in germ cells and early mouse embryos and consequences for radiation-induced transgenerational genomic damage

Exposure to ionizing radiation and other environmental agents can affect the genomic integrity of germ cells and induce adverse health effects in the progeny. Efficient DNA repair during gametogenesis and the early embryonic cycles after fertilization is critical for preventing transmission of DNA damage to the progeny and relies on maternal factors stored in the egg before fertilization. The ability of the maternal repair machinery to repair DNA damage in both parental genomes in the fertilizing egg is especially crucial for the fertilizing male genome that has not experienced a DNA repair-competent cellular environment for several weeks prior to fertilization. During the DNA repair-deficient period of spermatogenesis, DNA lesions may accumulate in sperm and be carried into the egg where, if not properly repaired, could result in the formation of heritable chromosomal aberrations or mutations and associated birth defects. Studies with female mice deficient in specific DNA repair genes have shown that: (i) cell cycle checkpoints are activated in the fertilized egg by DNA damage carried by the sperm; and (ii) the maternal genotype plays a major role in determining the efficiency of repairing genomic lesions in the fertilizing sperm and directly affect the risk for abnormal reproductive outcomes. There …
Date: January 18, 2009
Creator: Marchetti, Francesco & Wyrobek, Andrew J.
System: The UNT Digital Library
Drift compression and final focus options for heavy ionfusion (open access)

Drift compression and final focus options for heavy ionfusion

A drift compression and final focus lattice for heavy ion beams should focus the entire beam pulse onto the same focal spot on the target. The authors show that this requirement implies that the drift compression design needs to satisfy a self-similar symmetry condition. For un-neutralized beams, the Lie symmetry group analysis is applied to the warm-fluid model to systematically derive the self-similar drift compression solutions. For neutralized beams, the 1D Vlasov equation is solved explicitly and families of self-similar drift compression solutions are constructed. To compensate for the deviation from the self-similar symmetry condition due to the transverse emittance, four time-dependent magnets are introduced in the upstream of the drift compression such that the entire beam pulse can be focused onto the same focal spot.
Date: January 18, 2005
Creator: Qin, Hong; Davidson, Ronald C.; Barnard, John J. & Lee, Edward P.
System: The UNT Digital Library
Dynamics of neutralized electrons and the focusability of intenseion beams in HIF accelerating structures (open access)

Dynamics of neutralized electrons and the focusability of intenseion beams in HIF accelerating structures

In most of the proposals for HIF reactors, beams propagate ballistically through the containment chamber. To get the required final radius ({approx} 3 mm), the charge of the beam must be neutralized to some extent. Several neutralization schemes are possible, as co-injection of negative-ions beams, inclusion of external sources of electrons, or it can be provided by electrons coming from ionization of the background gas. In this work, we study the role of the electron dynamic on the neutralization and final radius of the beam. This is done by performing fully-electromagnetic PIC simulations of the beam ballistic transport using the BPIC code[1]. In agreement with previous works we found that the evolution of an isolated beam is well described as a bidimensional adiabatic compression, and the beam neutralization degree and final radius can be estimated from the initial electron transversal temperature. When a background gas is present the evolution differs significantly from an adiabatic compression. Even for low gas densities, the continuous electrons flow coming from gas ionization limits efficiently the compressional heating, thus reducing the final radius. Aspects of beam neutralization by background gas ionization are discussed.
Date: January 18, 2005
Creator: Lifschitz, A. F.; Maynard, G. & Vay, J.-V.
System: The UNT Digital Library
Electron Scattering in Hot/Warm Plasmas (open access)

Electron Scattering in Hot/Warm Plasmas

Electrical and thermal conductivities are presented for aluminum, iron and copper plasmas at various temperatures, and for gold between 15000 and 30000 Kelvin. The calculations are based on the continuum wave functions computed in the potential of the temperature and density dependent self-consistent 'average atom' (AA) model of the plasma. The cross sections are calculated by using the phase shifts of the continuum electron wave functions and also in the Born approximation. We show the combined effect of the thermal and radiative transport on the effective Rosseland mean opacities at temperatures from 1 to 1000 eV. Comparisons with low temperature experimental data are also presented.
Date: January 18, 2008
Creator: Rozsnyai, B F
System: The UNT Digital Library
Energetics of Oxygen Adatoms, Hydroxyl Species and Water Dissociation on Pt(111) (open access)

Energetics of Oxygen Adatoms, Hydroxyl Species and Water Dissociation on Pt(111)

None
Date: January 18, 2013
Creator: Karp, Eric M.; Campbell, Charles T.; /Washington U., Dept. Chem.; Studt, Felix; Abild-Pedersen, Frank; Norskov, Jens K. et al.
System: The UNT Digital Library