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CaMV35S promoter – A plant biology and biotechnology workhorse in the era of synthetic biology (open access)

CaMV35S promoter – A plant biology and biotechnology workhorse in the era of synthetic biology

This review article calls for establishing the CaMV 35S promoter as a quantitative reference standard for transcription activity in plants.
Date: November 18, 2020
Creator: Amack, Stephanie C. & Antunes, Mauricio S.
Object Type: Article
System: The UNT Digital Library
Prioritizing riparian corridors for ecosystem restoration in urbanizing watersheds (open access)

Prioritizing riparian corridors for ecosystem restoration in urbanizing watersheds

This article explores restoration, rather than protection, being the basis for developing a watershed level strategy for improving water quality in urbanizing watersheds.This study uses a geographical information system (GIS) approach that utilizes riparian characteristics extracted from 40-meter wide corridors centered on streams and rivers. The model was applied to 90 sub-watersheds in the watershed of an important drinking water reservoir in north central Texas, USA.
Date: February 4, 2020
Creator: Atkinson, Samuel F. & Lake, Matthew C.
Object Type: Article
System: The UNT Digital Library
Brassinosteroids Inhibit Autotropic Root Straightening by Modifying Filamentous-Actin Organization and Dynamics (open access)

Brassinosteroids Inhibit Autotropic Root Straightening by Modifying Filamentous-Actin Organization and Dynamics

Article describes study testing the hypothesis that epi-brassinolide (eBL) might enhance root gravitropism through its effects on filamentous-actin (F-actin) in plants.
Date: February 4, 2020
Creator: Bang, Louise de; Paez-Garcia, Ana; Cannon, Ashley E.; Chin, Sabrina; Kolape, Jaydeep; Liao, Fuqi et al.
Object Type: Article
System: The UNT Digital Library
Editorial: Biofuels and Bioenergy (open access)

Editorial: Biofuels and Bioenergy

Editorial on the research topic of biofuels and bioenergy.
Date: November 30, 2020
Creator: Barros-Rios, Jaime; Zhang, Jin & Lu, Mengzhu
Object Type: Article
System: The UNT Digital Library
Parental transgenerational epigenetic inheritance related to dietary crude oil exposure in Danio rerio (open access)

Parental transgenerational epigenetic inheritance related to dietary crude oil exposure in Danio rerio

Article investigating the transgenerational inheritance from both parental lines in zebrafish. Adult zebrafish were separated into female and male groups exposed for 21 days to either a control diet or to a diet containing water accommodated fractions of crude oil. To determine the maternal and paternal influence on their offspring, the authors evaluated responses from molecular to whole organismal levels in both generations.
Date: January 22, 2020
Creator: Bautista, Naim M.; Crespel, Amélie; Crossley, Janna; Padilla, Pamela A. & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Range-wide genetic structure in the thorn-tailed rayadito suggests limited gene flow towards peripheral populations (open access)

Range-wide genetic structure in the thorn-tailed rayadito suggests limited gene flow towards peripheral populations

Article assessing range-wide genetic structure and contemporary gene flow in the thorn-tailed rayadito (Aphrastura spinicauda), a passerine bird inhabiting the temperate forests of South America.
Date: June 10, 2020
Creator: Botero-Delgadillo, Esteban; Quirici, Veronica; Poblete, Yanina; Acevedo, Matías; Cuevas, Élfego; Bravo, Camila et al.
Object Type: Article
System: The UNT Digital Library
Phenotypic Switching Resulting From Developmental Plasticity: Fixed or Reversible? (open access)

Phenotypic Switching Resulting From Developmental Plasticity: Fixed or Reversible?

Article explores the question of whether animals with switched phenotypes during early development are unable to return to a normal range of adult phenotypes, or whether they do not experience the specific environmental conditions necessary for them to switch back to the normal range of adult phenotypes.
Date: January 21, 2020
Creator: Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Angiogenesis in the Avian Embryo Chorioallantoic Membrane: A Perspective on Research Trends and a Case Study on Toxicant Vascular Effects (open access)

Angiogenesis in the Avian Embryo Chorioallantoic Membrane: A Perspective on Research Trends and a Case Study on Toxicant Vascular Effects

This article considers areas of cardiovascular research that have benefited from studies of the chorioallantoic membrane (CAM), including the themes of investigation of the CAM’s hemodynamic influence on heart and central vessel development, use of the CAM as a model vascular bed for studying angiogenesis, and the CAM as an assay tool.
Date: October 28, 2020
Creator: Burggren, Warren W. & Antich, Maria Rojas
Object Type: Article
System: The UNT Digital Library
Maternal serum concentration of anti-Müllerian hormone is a better predictor than basal follicle stimulating hormone of successful blastocysts development during IVF treatment (open access)

Maternal serum concentration of anti-Müllerian hormone is a better predictor than basal follicle stimulating hormone of successful blastocysts development during IVF treatment

Article is a study that aims to identify actionable clinical and culture characteristics of IVF treatment that influence blastocyst developmental rate, with the goal of acquiring optimal success.
Date: October 12, 2020
Creator: Burggren, Warren W.; Herrington, Richard; Sadruddin, Sheela; Barnett, Brian; Ku, Lowell; Havemann, Dara et al.
Object Type: Article
System: The UNT Digital Library
Lipophilic signals lead to organ-specific gene expression changes in Arabidopsis seedlings (open access)

Lipophilic signals lead to organ-specific gene expression changes in Arabidopsis seedlings

Article presents a study where whole transcriptome sequencing (RNA-seq) and differential expression analysis were used to identify early (1–3 hr) transcriptional changes induced by the exogenous treatment of NAE 18:2 and NAE 18:3 in cotyledons, roots, and seedlings.
Date: July 15, 2020
Creator: Cannon, Ashley E.; Yan, Chengshi; Burks, David J.; Rao, Xiaolan; Azad, Rajeev K. & Chapman, Kent Dean
Object Type: Article
System: The UNT Digital Library
Metabolomics as an Emerging Tool for the Study of Plant–Pathogen Interactions (open access)

Metabolomics as an Emerging Tool for the Study of Plant–Pathogen Interactions

Paper discusses metabolomics studies that link changes in primary or specialized metabolism to the defense responses of plants against bacterial, fungal, nematode, and viral pathogens.
Date: January 29, 2020
Creator: Castro-Moretti, Fernanda R.; Gentzel, Irene N.; Mackey, David & Alonso, Ana Paula
Object Type: Article
System: The UNT Digital Library
Non-conventional pathways enable pennycress (Thlaspi arvense L.) embryos to achieve high efficiency of oil biosynthesis (open access)

Non-conventional pathways enable pennycress (Thlaspi arvense L.) embryos to achieve high efficiency of oil biosynthesis

Article exploring how to improve oil production in Pennycress (Thlaspi arvense L.).
Date: February 1, 2020
Creator: Cocuron, Jean-Christophe; Alonso, Ana Paula & Tsogtbaatar, Enkhtuul
Object Type: Article
System: The UNT Digital Library
Liquid Chromatography Tandem Mass Spectrometry Quantification of ¹³C-Labeling in Sugars (open access)

Liquid Chromatography Tandem Mass Spectrometry Quantification of ¹³C-Labeling in Sugars

This article describes a new methodology for monitoring sucrose labeling using liquid chromatography tandem mass spectrometry (LC-MS/MS). To date, the most commonly used method to monitor sucrose labeling is by nuclear magnetic resonance, which requires substantial amounts of biological sample.
Date: January 10, 2020
Creator: Cocuron, Jean-Christophe; Ross, Zacchary & Alonso, Ana P.
Object Type: Article
System: The UNT Digital Library
Assessing distribution shifts and ecophysiological characteristics of the only Antarctic winged midge under climate change scenarios (open access)

Assessing distribution shifts and ecophysiological characteristics of the only Antarctic winged midge under climate change scenarios

Article integrating ecophysiological information with the development of new high-resolution climatic layers for Antarctica, to better understand how the distribution of P. steinenii may respond to change over the next century under different IPCC climate change scenarios. The authors conclude that the species has the potential to expand its distribution to include parts of the west and east coasts of the Antarctic Peninsula and even coastal ice-free areas in parts of continental Antarctica. The authors also propose P. steinenii as an effective native sentinel and indicator species of climate change in the Antarctic.
Date: June 3, 2020
Creator: Contador, Tamara; Gañán, Melisa; Bizama, Gustavo; Fuentes-Jaque, Guillermo; Morales, Luis; Rendoll, Javier et al.
Object Type: Article
System: The UNT Digital Library
Draft Genome of the Common Snapping Turtle, Chelydra serpentina, a Model for Phenotypic Plasticity in Reptiles (open access)

Draft Genome of the Common Snapping Turtle, Chelydra serpentina, a Model for Phenotypic Plasticity in Reptiles

Article studying climate adaptation using common snapping turtles, Chelydra serpentina, as the model species. The genome and genetic variants identified here provide a foundation for future studies of adaptation to climate.
Date: December 1, 2020
Creator: Crossley, Dane A., II; Das, Debojyoti; Singh, Sunil Kumar; Bierstedt, Jacob; Erickson, Alyssa; Galli, Gina L. J. et al.
Object Type: Article
System: The UNT Digital Library
Proanthocyanidin Biosynthesis—a Matter of Protection (open access)

Proanthocyanidin Biosynthesis—a Matter of Protection

Article discussing key questions and opportunities in the field of Proanthocyanidins (PA) biosynthesis.
Date: August 18, 2020
Creator: Dixon, R. A. & Sarnala, Sai
Object Type: Article
System: The UNT Digital Library
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements (open access)

The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements

Article reporting a chromosome-scale assembly of the T. sinense genome.
Date: December 2, 2020
Creator: Dixon, R. A.; Liu, Ping-Li; Zhang, Xi; Mao, Jian-Feng; Hong, Yan-Ming; Zhang, Ren-Gang et al.
Object Type: Article
System: The UNT Digital Library
In silico guided structural and functional analysis of genes with potential involvement in resistance to coffee leaf rust: A functional marker based approach (open access)

In silico guided structural and functional analysis of genes with potential involvement in resistance to coffee leaf rust: A functional marker based approach

Article presents novel insights into the molecular nature of the SH genes, thereby opening new avenues for coffee rust resistance molecular breeding.
Date: July 8, 2020
Creator: Ferreira, Svio Siqueira; Barka, Geleta Dugassa; Caixeta, Eveline Teixeira & Zambolim, Larcio
Object Type: Article
System: The UNT Digital Library
MYB30 Orchestrates Systemic Reactive Oxygen Signaling and Plant Acclimation (open access)

MYB30 Orchestrates Systemic Reactive Oxygen Signaling and Plant Acclimation

This article explores the relationship among MYB30, the ROS wave, and systemic acclimation in Arabidopsis by determining the SAA response to HL stress of MYB30 mutants and wild-type plants.
Date: July 22, 2020
Creator: Fichman, Yosef; Zandalinas, Sara I.; Sengupta, Soham; Burks, David J.; Meyers, Ronald J., Jr.; Azad, Rajeev K. et al.
Object Type: Article
System: The UNT Digital Library
ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content (open access)

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content

Article highlights the importance of pectin in cell wall integrity and the value of lignin modification as a tool to interrogate the informational content of plant cell walls.
Date: January 23, 2020
Creator: Gallego-Giraldo, Lina; Liu, Chang; Pose-Albacete, Sara; Pattathil, Sivakumar; Peralta, Angelo Gabriel; Young, Jenna et al.
Object Type: Article
System: The UNT Digital Library
SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation (open access)

SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation

Article demonstrating that part of the function of two SEIPIN isoforms in Arabidopsis (Arabidopsis thaliana), AtSEIPIN2 and AtSEIPIN3, may depend on their interaction with the vesicle-associated membrane protein (VAMP)–associated protein (VAP) family member AtVAP27-1. The authors used a combination of biochemical, cell biology, and genetics approaches to show that AtVAP27-1 interacts with the N termini of AtSEIPIN2 and AtSEIPIN3 and likely supports the normal formation of LDs. This insight indicates that the ER membrane tethering machinery in plant cells could play a role with select SEIPIN isoforms in LD biogenesis at the ER, and additional experimental evidence in Saccharomyces cerevisiae supports the possibility that this interaction may be important in other eukaryotic systems.
Date: July 20, 2020
Creator: Greer, Michael Scott; Cai, Yingqi; Gidda, Satinder K.; Esnay, Nicolas; Kretzschmar, Franziska K.; Seay, Damien C. et al.
Object Type: Article
System: The UNT Digital Library
Salt-water acclimation of the estuarine crocodile Crocodylus porosus involves enhanced ion transport properties of the urodaeum and rectum (open access)

Salt-water acclimation of the estuarine crocodile Crocodylus porosus involves enhanced ion transport properties of the urodaeum and rectum

This article reports that in addition to the well-documented functional plasticity of the lingual salt glands, the middle of the three cloacal segments (i.e. the urodaeum) responds to increased ambient salinity to enhance solute-coupled water absorption in estuarine crocodiles (Crocodylus porosus).
Date: July 16, 2019
Creator: Grosell, Martin; Heuer, Rachael M.; Wu, N. C.; Cramp, Rebecca L.; Wang, Yadong; Mager, Edward M. et al.
Object Type: Article
System: The UNT Digital Library
A Small Compound Targeting Prohibitin with Potential Interest for Cognitive Deficit Rescue in Aging mice and Tau Pathology Treatment (open access)

A Small Compound Targeting Prohibitin with Potential Interest for Cognitive Deficit Rescue in Aging mice and Tau Pathology Treatment

Article describes study analyzing the effects of a new purine derivative drug, PDD005, in attenuating mechanisms involved in the pathogenesis of neurodegenerative diseases, using both in vivo and in vitro models.
Date: January 24, 2020
Creator: Guyot, Anne-Cécile; Leuxe, Charlotte; Disdier, Clémence; Oumata, Nassima; Costa, Narciso; Le Roux, Gwenaëlle et al.
Object Type: Article
System: The UNT Digital Library
Genomic diversity of bacteriophages infecting Microbacterium spp (open access)

Genomic diversity of bacteriophages infecting Microbacterium spp

Article describing the isolation and genomic characterization of 116 phages that infect Microbacterium spp.
Date: June 18, 2020
Creator: Hughes, Lee E.; Jacobs-Sera, Deborah; Abad, Lawrence A.; Alvey, Richard M.; Anders, Kirk R.; Aull, Haley G. et al.
Object Type: Article
System: The UNT Digital Library