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The Rub pathway is a conserved protein modification pathway. RUB (called Rubp1 in budding yeast, Nedd8 in animals and RUB in plants) is a ubiquitin-like 76-amino acid protein. It covalently attaches to protein using an enzymatic machinery analogous to the enzymes that attach ubiquitin to its substrate proteins. However, the nature of the complement of Rub-modified proteins in organisms was not clear. From bioinformatics analyses, one can identify a Rub activating enzymes and Rub conjugating enzymes. However, in many cases, their biochemical properties were not described. In DOE-funded work, we made major advances in our understanding of the Rub pathway in yeast and plants, work that is applicable to other organisms as well. There is a multi-subunit enzyme called SCF in all eukaryotes. The SCF consists of several subunits that serve as a scaffold (the cullin, SKP and RBX subunits) and one subunit that interacts with the substrate. This cullin protein (called Cdc53p in yeast and CULLIN 1 in plants and animals) was a known Rub target. In this work, we identified additional Rub targets in yeast as the other cullin-like proteins Cul3p and Rtt101p. Additionally we described the conservation of the Rub pathway because plant RUB1 can conjugated to …

More than 56 million gallons of radioactive and hazardous waste are stored in 177 underground storage tanks at the U.S. Department of Energy’s (DOE’s) Hanford Site in southeastern Washington State. The Hanford Tank Waste Treatment and Immobilization Plant (WTP) is being constructed to treat the wastes and immobilize them in a glass waste form. The WTP includes a pretreatment facility to separate the wastes into a small volume of high-level waste (HLW) containing most of the radioactivity and a larger volume of low-activity waste (LAW) containing most of the nonradioactive chemicals. The HLW will be converted to glass in the HLW vitrification facility for ultimate disposal at an offsite federal repository. At least a portion (~35%) of the LAW will be converted to glass in the LAW vitrification facility and will be disposed of onsite at the Integrated Disposal Facility (IDF). The pretreatment and HLW vitrification facilities will have the capacity to treat and immobilize the wastes destined for each facility. However, a second facility will be needed for the expected volume of additional LAW requiring immobilization. A cementitious waste form known as Cast Stone is being considered to provide the required additional LAW immobilization capacity. The Cast Stone waste …

Feasibility tests were conducted using photogrammetry and laser technologies to estimate the volume of waste in a tank. These technologies were compared with video Camera/CAD Modeling System (CCMS) estimates; the current method used for post-retrieval waste volume estimates. This report summarizes test results and presents recommendations for further development and deployment of technologies to provide more accurate and faster waste volume estimates in support of tank retrieval and closure.

The purpose of this demonstration project is to quantify the energy savings and water efficiency potential of commercial laundry wastewater recycling systems and low-temperature detergent supply systems to help promote the adoption of these technologies in the commercial sector. This project will create a set of technical specifications for efficient multi-load laundry systems (both new and retrofit) tailored for specific applications and/or sectors (e.g., hospitality, health care). The specifications will be vetted with the appropriate Better Buildings Alliance (BBA) members (e.g., Commercial Real Estate Energy Alliance, Hospital Energy Alliance), finalized, published, and disseminated to enable widespread technology transfer in the industry and specifically among BBA partners.

Savannah River National Laboratory (SRNL) analyzed solvent samples from Modular Caustic-Side Solvent Extraction Unit (MCU) in support of continuing operations. A quarterly analysis of the solvent is required to maintain solvent composition within specifications. Analytical results of the analyses of Solvent Hold Tank (SHT) samples MCU-13-143, MCU-13-144, MCU-13-145, MCU-13-146, MCU-13-147 and MCU-13-148 received 29 January 2012 are reported. The results show that the solvent at MCU does not require an Isopar® L addition, but it will require addition of trioctylamine. SRNL also analyzed the SHT sample for {sup 137}Cs content and determined the measured value is within tolerance and the value has returned to levels observed in 2012.

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The development of comprehensive two-dimensional gas chromatography (GC x GC) has expanded the analytical window for studying complex mixtures like oil. Compared to traditional gas chromatography, this technology separates and resolves at least an order of magnitude more compounds, has a much larger signal to noise ratio, and sorts compounds based on their chemical class; hence, providing highly refined inventories of petroleum hydrocarbons in geochemical samples that was previously unattainable. In addition to the increased resolution afforded by GC x GC, the resulting chromatograms have been used to estimate the liquid vapor pressures, aqueous solubilities, octanol-water partition coefficients, and vaporization enthalpies of petroleum hydrocarbons. With these relationships, powerful and incisive analyses of phase-transfer processes affecting petroleum hydrocarbon mixtures in the environment are available. For example, GC x GC retention data has been used to quantitatively deconvolve the effects of phase transfer processes such as water washing and evaporation. In short, the positive attributes of GC x GC-analysis have led to a methodology that has revolutionized the analysis of petroleum hydrocarbons. Overall, this research has opened numerous fields of study on the biogeochemical "œgenetics" (referred to as petroleomics) of petroleum samples in both subsurface and surface environments. Furthermore, these new findings …

Washington River Protection Solutions (WRPS) contracted with HiLine Engineering & Fabrication, Inc. to assess the accuracy of photogrammetry tools as compared to video Camera/CAD Modeling System (CCMS) estimates. This test report documents the results of using photogrammetry to estimate the volume of waste in tank 241-C-I04 from post-retrieval videos and results using photogrammetry to estimate the volume of waste piles in the CCMS test video.

Under this project, the Aleutian Pribilof Islands Association (APIA) conducted wind feasibility studies for Adak, False Pass, Nikolski, Sand Point and St. George. The DOE funds were also be used to continue APIA's role as project coordinator, to expand the communication network quality between all participants and with other wind interest groups in the state and to provide continued education and training opportunities for regional participants. This DOE project began 09/01/2005. We completed the economic and technical feasibility studies for Adak. These were funded by the Alaska Energy Authority. Both wind and hydro appear to be viable renewable energy options for Adak. In False Pass the wind resource is generally good but the site has high turbulence. This would require special care with turbine selection and operations. False Pass may be more suitable for a tidal project. APIA is funded to complete a False Pass tidal feasibility study in 2012. Nikolski has superb potential for wind power development with Class 7 wind power density, moderate wind shear, bi-directional winds and low turbulence. APIA secured nearly $1M from the United States Department of Agriculture Rural Utilities Service Assistance to Rural Communities with Extremely High Energy Costs to install a 65kW wind …

A resin slurry venting analysis was conducted to address safety issues associated with overpressurization of ion exchange columns used in the Purex process at the Savannah River Site (SRS). If flow to these columns were inadvertently interrupted, an exothermic runaway reaction could occur between the ion exchange resin and the nitric acid used in the feed stream. The nitric acid-resin reaction generates significant quantities of noncondensable gases, which would pressurize the column. To prevent the column from rupturing during such events, rupture disks are installed on the column vent lines. The venting analysis models accelerating rate calorimeter (ARC) tests and data from tests that were performed in a vented test vessel with a rupture disk. The tests showed that the pressure inside the test vessel continued to increase after the rupture disk opened, though at a slower rate than prior to the rupture. Calculated maximum discharge rates for the resin venting tests exceeded the measured rates of gas generation, so the vent size was sufficient to relieve the pressure in the test vessel if the vent flow rate was constant. The increase in the vessel pressure is modeled as a transient phenomenon associated with expansion of the resin slurry/gas mixture …

Friction Stir Extrusion (FSE) is a novel energy-efficient solid-state material synthesis and recycling technology capable of producing large quantity of bulk nano-engineered materials with tailored, mechanical, and physical properties. The novelty of FSE is that it utilizes the frictional heating and extensive plastic deformation inherent to the process to stir, consolidate, mechanically alloy, and convert the powders, chips, and other recyclable feedstock materials directly into useable product forms of highly engineered materials in a single step (see Figure 1). Fundamentally, FSE shares the same deformation and metallurgical bonding principles as in the revolutionary friction stir welding process. Being a solid-state process, FSE eliminates the energy intensive melting and solidification steps, which are necessary in the conventional metal synthesis processes. Therefore, FSE is highly energy-efficient, practically zero emissions, and economically competitive. It represents a potentially transformational and pervasive sustainable manufacturing technology for metal recycling and synthesis. The goal of this project was to develop the technological basis and demonstrate the commercial viability of FSE technology to produce the next generation highly functional electric cables for electricity delivery infrastructure (a multi-billion dollar market). Specific focus of this project was to (1) establish the process and material parameters to synthesize novel alloys such …

The Magnetic Reconnection Experiment (MRX)[1] has been utilized to assess the effectiveness of minimum variance analysis on the magnetic field (MVAB) and boundary-crossing time analysis (BCTA). The neutral sheet is swept, or jogged, in a controlled manner with respect to the stationary probes by pulsed internal coil currents. Magnetic field data from measurement points resembling data from multi-spacecraft flying though a reconnecting current sheet is used to check both techniques to deduce a proper normal vector. We examine discharges with the two-dimensional (2-D) X-line structure as well as cases in which a flux rope forms within the layer. All discharges are in a two-fluid regime in which electrons are magnetized but not ions. Boundary-crossing time analysis with four sample measurement points forming a tetrahedron generates a reasonable unit normal vector and relative velocity along the normal vector for all of the tested cases. On the other hand, MVAB sometimes fails to predict a proper normal direction. This is because the X-line magnetic geometry is fundamentally 2-D or 3-D. However, the direction along the reconnecting field determined by MVAB does not deviate much from the real magnetic geometry documented by 2-D magnetic probe arrays and one additional probe at a different …

Maximizing the utility of upcoming photometric cluster surveys requires a thorough understanding of the richness-mass relation of galaxy clusters. We use Monte Carlo simulations to study the impact of various sources of observational scatter on this relation. Cluster ellipticity, photometric errors, photometric redshift errors, and cluster-to-cluster variations in the properties of red-sequence galaxies contribute negligible noise. Miscentering, however, can be important, and likely contributes to the scatter in the richness - mass relation of galaxy maxBCG clusters at the low mass end, where centering is more difficult. We also investigate the impact of projection effects under several empirically motivated assumptions about cluster environments. Using SDSS data and the maxBCG cluster catalog, we demonstrate that variations in cluster environments can rarely ({approx} 1%-5% of the time) result in significant richness boosts. Due to the steepness of the mass/richness function, the corresponding fraction of optically selected clusters that suffer from these projection effects is {approx} 5%-15%. We expect these numbers to be generic in magnitude, but a precise determination requires detailed, survey-specific modeling.

A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of Discrete Exterior Calculus [1], the field solver, interpolation scheme and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law.

This study was conducted to obtain baseline data on use of the proposed Simpson Ridge Wind Resource Area (SRWRA) in Carbon County, Wyoming by greater sage-grouse. The first two study years were designed to determine pre-construction seasonally selected habitats and population-level vital rates (productivity and survival). The presence of an existing wind energy facility in the project area, the PacifiCorp Seven Mile Hill (SMH) project, allowed us to obtain some information on initial sage-grouse response to wind turbines the first two years following construction. To our knowledge these are the first quantitative data on sage-grouse response to an existing wind energy development. This report presents results of the first two study years (April 1, 2009 through March 30, 2011). This study was selected for continued funding by the National Wind Coordinating Collaborative Sage-Grouse Collaborative (NWCC-SGC) and has been ongoing since March 30, 2011. Future reports summarizing results of this research will be distributed through the NWCC-SGC. To investigate population trends through time, we determined the distribution and numbers of males using leks throughout the study area, which included a 4-mile radius buffer around the SRWRA. Over the 2-year study, 116 female greater sage-grouse were captured by spotlighting and use of …

Vectorization is data parallelism (SIMD, SIMT, etc.) - extension of ISA enabling the same instruction to be performed on multiple data items simultaeously. Many/most CPUs support vectorization in some form. Vectorization is difficult to enable, but can yield large efficiency gains. Extra programmer effort is required because: (1) not all algorithms can be vectorized (regular algorithm structure and fine-grain parallelism must be used); (2) most CPUs have data alignment restrictions for load/store operations (obey or risk incorrect code); (3) special directives are often needed to enable vectorization; and (4) vector instructions are architecture-specific. Vectorization is the best way to optimize for power and performance due to reduced clock cycles. When data is organized properly, a vector load instruction (i.e. movaps) can replace 'normal' load instructions (i.e. movsd). Vector operations can potentially have a smaller footprint in the instruction cache when fewer instructions need to be executed. Hybrid index sets insulate users from architecture specific details. We have applied hybrid index sets to achieve optimal vectorization. We can extend this concept to handle other programming models.

The goal of this project is to develop forensic genotyping assays for select agent viruses, addressing a significant capability gap for the viral bioforensics and law enforcement community. We used a multipronged approach combining bioinformatics analysis, PCR-enriched samples, microarrays and TaqMan assays to develop high resolution and cost effective genotyping methods for strain level forensic discrimination of viruses. We have leveraged substantial experience and efficiency gained through year 1 on software development, SNP discovery, TaqMan signature design and phylogenetic signature mapping to scale up the development of forensics signatures in year 2. In this report, we have summarized the Taqman signature development for South American hemorrhagic fever viruses, tick-borne encephalitis viruses and henipaviruses, Old World Arenaviruses, filoviruses, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus and Japanese encephalitis virus.

The overall goal of this project is to forensically characterize 100 unknown Burkholderia isolates in the US-Australia collaboration. We will identify genome-wide single nucleotide polymorphisms (SNPs) from B. pseudomallei and near neighbor species including B. mallei, B. thailandensis and B. oklahomensis. We will design microarray probes to detect these SNP markers and analyze 100 Burkholderia genomic DNAs extracted from environmental, clinical and near neighbor isolates from Australian collaborators on the Burkholderia SNP microarray. We will analyze the microarray genotyping results to characterize the genetic diversity of these new isolates and triage the samples for whole genome sequencing. In this interim report, we described the SNP analysis and the microarray probe design for the Burkholderia SNP microarray.

We clarify a number of issues on Fayet-Iliopoulos (FI) terms in supergravity, keeping the formalism at a minimum and making use of explicit examples. We explain why, if the U(1) vector is massive everywhere in field space, FI terms are not genuine and can always be redefined away or introduced when they are not present. We formulate a simple anomaly-free model with a genuine FI term, a classically stable de Sitter (dS) vacuum and no global symmetries. We explore the relation between N = 2 and N = 1 FI terms by discussing N = 1 truncations of N = 2 models with classically stable dS vacua.

Transportation and storage of plutonium oxide is typically done using a convenience container to hold the oxide powder which is then placed inside a containment vessel. Intermediate containers which act as uncredited confinement barriers may also be used. The containment vessel is subject to an internal pressure due to several sources including; (1) plutonium oxide provides a heat source which raises the temperature of the gas space, (2) helium generation due to alpha decay of the plutonium, (3) hydrogen generation due to radiolysis of the water which has been adsorbed onto the plutonium oxide, and (4) degradation of plastic bags which may be used to bag out the convenience can from a glove box. The contributions of these sources are evaluated in a reasonably conservative manner.

The image-current heating on the resistive beam chamber of a superconducting undulator (SCU) was calculated based on the normal and anomalous skin effects. Using the bulk resistivity of copper for the beam chamber, the heat loads were calculated for the residual resistivity ratios (RRRs) of unity at room temperature to 100 K at a cryogenic temperature as the reference. Then, using the resistivity of the specific aluminum alloy 6053-T5, which will be used for the SCU beam chamber, the heat loads were calculated. An electron beam stored in a storage ring induces an image current on the inner conducting wall, mainly within a skin depth, of the beam chamber. The image current, with opposite charge to the electron beam, travels along the chamber wall in the same direction as the electron beam. The average current in the storage ring consists of a number of bunches. When the pattern of the bunched beam is repeated according to the rf frequency, the beam current may be expressed in terms of a Fourier series. The time structure of the image current is assumed to be the same as that of the beam current. For a given resistivity of the chamber inner wall, the …

Currently, all H1616 shipping package containers undergo annual re-verification testing, including containment vessel leak testing to verify leak-tightness (<1 x 10{sup -7} ref cc/sec air) as per ANSI N14.5. The purpose of this literature review is to supplement aging studies currently being performed by SRNL on the EPDM O-rings to provide the technical basis for extending annual re-verification testing for the H1616 shipping package and to predict the life of the seals at bounding service conditions. The available data suggest that the EPDM O-rings can retain significant mechanical properties and sealing force at or below bounding service temperatures (169 F or 76 C) beyond the 1 year maintenance period. Interpretation of available data suggests that a service life of at least 2 years and potentially 4-6 years may be possible at bounding temperatures. Seal lifetimes at lower, more realistic temperatures will likely be longer. Being a hydrocarbon elastomer, EPDM O-rings may exhibit an inhibition period due to the presence of antioxidants. Once antioxidants are consumed, mechanical properties and seal performance could decline at a faster rate. Testing is being performed to validate the assumptions outlined in this report and to assess the long-term performance of O-ring seals under actual service …

We study the {Upsilon}(3S, 2S) {yields} {eta}{Upsilon}(1S) and {Upsilon}(3S, 2S) {yields} {pi}{sup +}{pi}{sup -}{Upsilon}(1S) transitions with 122 x 10{sup 6} {Upsilon}(3S) and 100 x 10{sup 6} {Upsilon}(2S) mesons collected by the BABAR detector at the PEP-II asymmetric-energy e{sup +}e{sup -} collider. We measure {Beta}[{Upsilon}(2S) {yields} {eta}{Upsilon}(1S)] = (2.39 {+-} 0.31(stat.) {+-} 0.14(syst.)) x 10{sup -4} and {Lambda}[{Upsilon}(2S) {yields} {eta}{Upsilon}(1S)]/{Lambda}[{Upsilon}(2S) {yields} {pi}{sup +}{pi}{sup -}{Upsilon}(1S)] = (1.35 {+-} 0.17(stat.) {+-} 0.08(syst.)) x 10{sup -3}. We find no evidence for {Upsilon}(3S) {yields} {eta}{Upsilon}(1S) and obtain {Beta}[{Upsilon}(3S) {yields} {eta}{Upsilon}(1S)] < 1.0 x 10{sup -4} and {Lambda}[{Upsilon}(3S) {yields} {eta}{Upsilon}(1S)]/{Lambda}[{Upsilon}(3S) {yields} {pi}{sup +}{pi}{sup -}{Upsilon}(1S)] < 2.3 x 10{sup -3} as upper limits at the 90% confidence level. We also provide improved measurements of the {Upsilon}(2S)-{Upsilon}(1S) and {Upsilon}(3S)-{Upsilon}(1S) mass differences, 562.170 {+-} 0.007(stat.) {+-} 0.088(syst.)MeV/c{sup 2} and 893.813 {+-} 0.015(stat.) {+-} 0.107(syst.)MeV/c{sup 2}, respectively.