This report focuses on the R&D programs. It divides the programs into four categories: energy resources R&D, science, national security R&D, and environmental quality R&D. Those categories, which approximate the way DOE has divided up its programs, are set up to keep similar research activities together.(1) R&D funding is concentrated in the first three. The report gives a description of the programs within each category including their research objectives and the activities where significant budget changes were requested for FY1999. It then describes the request, and congressional appropriation and authorization action. There follows a discussion of issues about the FY1999 request that are emerging during congressional consideration of the budget.