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Apical polarity in three-dimensional culture systems: where to now? (open access)

Apical polarity in three-dimensional culture systems: where to now?

Delineation of the mechanisms that establish and maintain the polarity of epithelial tissues is essential to understanding morphogenesis, tissue specificity and cancer. Three-dimensional culture assays provide a useful platform for dissecting these processes but, as discussed in a recent study in BMC Biology on the culture of mammary gland epithelial cells, multiple parameters that influence the model must be taken into account.
Date: January 21, 2010
Creator: Inman, J. L. & Bissell, Mina
System: The UNT Digital Library
AUTOMATING GROUNDWATER SAMPLING AT HANFORD THE NEXT STEP (open access)

AUTOMATING GROUNDWATER SAMPLING AT HANFORD THE NEXT STEP

Historically, the groundwater monitoring activities at the Department of Energy's Hanford Site in southeastern Washington State have been very "people intensive." Approximately 1500 wells are sampled each year by field personnel or "samplers." These individuals have been issued pre-printed forms showing information about the well(s) for a particular sampling evolution. This information is taken from 2 official electronic databases: the Hanford Well information System (HWIS) and the Hanford Environmental Information System (HEIS). The samplers used these hardcopy forms to document the groundwater samples and well water-levels. After recording the entries in the field, the samplers turned the forms in at the end of the day and other personnel posted the collected information onto a spreadsheet that was then printed and included in a log book. The log book was then used to make manual entries of the new information into the software application(s) for the HEIS and HWIS databases. A pilot project for automating this extremely tedious process was lauched in 2008. Initially, the automation was focused on water-level measurements. Now, the effort is being extended to automate the meta-data associated with collecting groundwater samples. The project allowed electronic forms produced in the field by samplers to be used in …
Date: January 21, 2010
Creator: CW, CONNELL; SF, CONLEY; RD, HILDEBRAND; DE, CUNNINGHAM; R_D_Doug_Hildebrand@rl.gov & DeVon_E_Cunningham@rl.gov
System: The UNT Digital Library
Los encuentros entre México y los Estados Unidos en Spanglish y Los tres entierros de Melquiades Estrada (open access)

Los encuentros entre México y los Estados Unidos en Spanglish y Los tres entierros de Melquiades Estrada

This article contains a comparative analysis of the representation of the Mexican migrant worker in two films: Spanglish and The Three Burials of Melquiades Estrada.
Date: January 21, 2010
Creator: Manickam, Samuel C.
System: The UNT Digital Library
Radioactive Threat Detection with Scattering Physics: A Model-Based Application (open access)

Radioactive Threat Detection with Scattering Physics: A Model-Based Application

The detection of radioactive contraband is a critical problem in maintaining national security for any country. Emissions from threat materials challenge both detection and measurement technologies especially when concealed by various types of shielding complicating the transport physics significantly. The development of a model-based sequential Bayesian processor that captures both the underlying transport physics including scattering offers a physics-based approach to attack this challenging problem. It is shown that this processor can be used to develop an effective detection technique.
Date: January 21, 2010
Creator: Candy, J V; Chambers, D H; Breitfeller, E F; Guidry, B L; Verbeke, J M; Axelrod, M A et al.
System: The UNT Digital Library
Bridging silyl groups in sigma-bond metathesis and [1, 2] shifts. An experimental and computational study of the reaction between cerium metallocenes and MeOSiMe3 (open access)

Bridging silyl groups in sigma-bond metathesis and [1, 2] shifts. An experimental and computational study of the reaction between cerium metallocenes and MeOSiMe3

The reaction of Cp'2CeH (Cp' = 1,2,4-(Me3C)3C5H2 ) with MeOSiMe3 gives Cp'2CeOMe and HSiMe3 and the reaction of the metallacycle, Cp'[(Me3C)2C5H2C(Me) 2CH2]Ce, with MeOSiMe3 yields Cp'2CeOCH2SiMe3, formed from hypothetical Cp'2CeCH2OSiMe3 by a [1, 2] shift also known as a silyl-Wittig rearrangement. Although both cerium products are alkoxides, they are formed by different pathways. DFT calculations on the reaction of the model metallocene, Cp2CeH, and MeOSiMe3 show that the lowest energy pathway is a H for OMe exchange at Ce that occurs by way of a sigma-bond metathesis transition state as SiMe3 exchanges partners. The formation of Cp2CeOCH2SiMe3 occurs by way of a low activation barrier [1, 2]shift of the SiMe3 group in Cp2CeCH2OSiMe3. Calculations on a model metallacycle, Cp[C5H4C(Me)2CH2]Ce, show that the metallacycle favors CH bond activation over sigma-bond metathesis involving the transfer of the SiMe3 group in good agreement with experiment. The sigma-bond metathesis involving the transfer of SiMe3 and the [1, 2]shift of SiMe3 reactions have in common a pentacoordinate silicon at the transition states. A molecular orbital analysis illustrates the connection between these two Si-O bond cleavage reactions and traces the reason why they occur for a silyl but not for an alkyl group to the difference …
Date: April 21, 2010
Creator: Werkema, Evan; Yahia, Ahmed; Maron, Laurent; Eisenstein, Odile & Andersen, Richard
System: The UNT Digital Library
Influence of molecular ordering on electrical and friction properties of omega-(trans-4-stilbene)alkylthiol self-assembled monolayers on Au (111) (open access)

Influence of molecular ordering on electrical and friction properties of omega-(trans-4-stilbene)alkylthiol self-assembled monolayers on Au (111)

The electrical and friction properties of omega-(trans-4-stilbene)alkylthiol self-assembled monolayers (SAMs) on Au(111) were investigated using atomic force microscopy (AFM) and near edge x-ray absorption fine structure spectroscopy (NEXAFS). The sample surface was uniformly covered with a molecular film consisting of very small grains. Well-ordered and flat monolayer islands were formed after the sample was heated in nitrogen at 120 oC for 1 h. While lattice resolved AFM images revealed a crystalline phase in the islands, the area between islands showed no order. The islands exhibit substantial reduction (50percent) in friction, supporting the existence of good ordering. NEXAFS measurements revealed an average upright molecular orientation in the film, both before and after heating, with a narrower tilt-angle distribution for the heated fim. Conductance-AFM measurements revealed a two orders of magnitude higher conductivity on the ordered islands than on the disordered phase. We propose that the conductance enhancement is a result of a better pi-pi stacking between the trans-stilbene molecular units as a result of improved ordering in islands.
Date: April 21, 2010
Creator: Qi, Yabing; Liu, Xiaosong; Hendriksen, B.L.M.; Navarro, V.; Park, Jeong Y.; Ratera, Imma et al.
System: The UNT Digital Library
A new method to generate dust with astrophysical properties (open access)

A new method to generate dust with astrophysical properties

In interstellar and interplanetary space, the size distribution and composition of dust grains play an important role. For example, dust grains determine optical and ultraviolet extinction levels in astronomical observations, dominate the cooling rate of our Galaxy, and sets the thermal balance and radiative cooling rates in molecular clouds, which are the birth place of stars. Dust grains are also a source of damage and failure to space hardware and thus present a hazard to space flight. To model the size distribution and composition of dust grains, and their effect in the above scenarios, it is vital to understand the mechanism of dust-shock interaction. We demonstrate a new experiment which employs a laser to subject dust grains to pressure spikes similar to those of colliding astrophysical dust, and which accelerates the grains to astrophysical velocities. The new method generates much larger data sets than earlier methods; we show how large quantities (thousands) of grains are accelerated at once, rather than accelerating individual grains, as is the case of earlier methods using electric fields.
Date: April 21, 2010
Creator: Hansen, J. F.; van Breugel, W.; Bringa, E. M.; Graham, G. A.; Remington, B. A.; Taylor, E. A. et al.
System: The UNT Digital Library
Probing Radiation Damage in Plutonium Alloys with Multiple Measurement Techniques (open access)

Probing Radiation Damage in Plutonium Alloys with Multiple Measurement Techniques

A material subjected to radiation damage will usually experience changes in its physical properties. Measuring these changes in the physical properties provides a basis to study radiation damage in a material which is important for a variety of real world applications from reactor materials to semiconducting devices. When investigating radiation damage, the relative sensitivity of any given property can vary considerably based on the concentration and type of damage present as well as external parameters such as the temperature and starting material composition. By measuring multiple physical properties, these differing sensitivities can be leveraged to provide greater insight into the different aspects of radiation damage accumulation, thereby providing a broader understanding of the mechanisms involved. In this report, self-damage from {alpha}-particle decay in Pu is investigated by measuring two different properties: magnetic susceptibility and resistivity. The results suggest that while the first annealing stage obeys second order chemical kinetics, the primary mechanism is not the recombination of vacancy-interstitial close pairs.
Date: April 21, 2010
Creator: McCall, S K; Fluss, M J & Chung, B W
System: The UNT Digital Library
SECONDARY ELECTRON TRAJECTORIES IN HIGH-GRADIENT VACUUM INSULATORS WITH FAST HIGH-VOLTAGE PULSES (open access)

SECONDARY ELECTRON TRAJECTORIES IN HIGH-GRADIENT VACUUM INSULATORS WITH FAST HIGH-VOLTAGE PULSES

Vacuum insulators composed of alternating layers of metal and dielectric, known as high-gradient insulators (HGIs), have been shown to withstand higher electric fields than conventional insulators. Primary or secondary electrons (emitted from the insulator surface) can be deflected by magnetic fields from external sources, the high-current electron beam, the conduction current in the transmission line, or the displacement current in the insulator. These electrons are deflected either toward or away from the insulator surface and this affects the performance of the vacuum insulator. This paper shows the effects of displacement current from short voltage pulses on the performance of high gradient insulators. Generally, vacuum insulator failure is due to surface flashover, initiated by electrons emitted from a triple junction. These electrons strike the insulator surface thus producing secondary electrons, and can lead to a subsequent electron cascade along the surface. The displacement current in the insulator can deflect electrons either toward or away from the insulator surface, and affects the performance of the vacuum insulator when the insulator is subjected to a fast high-voltage pulse. Vacuum insulators composed of alternating layers of metal and dielectric, known as high-gradient insulators (HGIs), have been shown to withstand higher electric fields than conventional …
Date: April 21, 2010
Creator: Chen, Y.; Blackfield, D.; Nelson, S. D. & Poole, B.
System: The UNT Digital Library
Self-guided Laser Wakefield Acceleration Beyond 1 GeV using Ionization-induced Injection (open access)

Self-guided Laser Wakefield Acceleration Beyond 1 GeV using Ionization-induced Injection

None
Date: April 21, 2010
Creator: Clayton, C. E.; Ralph, J. E.; Albert, F.; Fonseca, R. A.; Glenzer, S. H.; Joshi, C. et al.
System: The UNT Digital Library
Aerosol-Assisted Solid Debris Collection for the National Ignition Facility (open access)

Aerosol-Assisted Solid Debris Collection for the National Ignition Facility

The National Ignition Facility (NIF) has been completed and has made its first shots on-target. While upcoming experiments will be focused on achieving ignition, a variety of subsequent experiments are planned for the facility, including measurement of cross sections, astrophysical measurements, and investigation of hydrodynamic instability in the target capsule. In order to successfully execute several of these planned experiments, the ability to collect solid debris following a NIF capsule shot will be required. The ability to collect and analyze solid debris generated in a shot at the National Ignition Facility (NIF) will greatly expand the number of nuclear reactions studied for diagnostic purposes. Currently, reactions are limited to only those producing noble gases for cryogenic collection and counting with the Radchem Apparatus for Gas Sampling (RAGS). The radchem solid collection diagnostic has already been identified by NIF to be valuable for the determination and understanding of mix generated in the target capsule's ablation. LLNL is currently developing this solid debris collection capability at NIF, and is in the stage of testing credible designs. Some of these designs explore the use of x-ray generated aerosols to assist in collection of solid debris. However, the variety of harsh experimental conditions this …
Date: May 21, 2010
Creator: Nelson, S. L.; Shaughnessy, D. A.; Moody, K. J.; Ivanov, V. V.; Astanovitskiy, A. L.; Lewis, L. A. et al.
System: The UNT Digital Library
Analytical solution for Joule-Thomson cooling during CO2 geo-sequestration in depleted oil and gas reservoirs (open access)

Analytical solution for Joule-Thomson cooling during CO2 geo-sequestration in depleted oil and gas reservoirs

Mathematical tools are needed to screen out sites where Joule-Thomson cooling is a prohibitive factor for CO{sub 2} geo-sequestration and to design approaches to mitigate the effect. In this paper, a simple analytical solution is developed by invoking steady-state flow and constant thermophysical properties. The analytical solution allows fast evaluation of spatiotemporal temperature fields, resulting from constant-rate CO{sub 2} injection. The applicability of the analytical solution is demonstrated by comparison with non-isothermal simulation results from the reservoir simulator TOUGH2. Analysis confirms that for an injection rate of 3 kg s{sup -1} (0.1 MT yr{sup -1}) into moderately warm (>40 C) and permeable formations (>10{sup -14} m{sup 2} (10 mD)), JTC is unlikely to be a problem for initial reservoir pressures as low as 2 MPa (290 psi).
Date: May 21, 2010
Creator: Mathias, S.A.; Gluyas, J.G.; Oldenburg, C.M. & Tsang, C.-F.
System: The UNT Digital Library
AVNG as a Test Case for Cooperative Design (open access)

AVNG as a Test Case for Cooperative Design

Designing a measurement system that might be used in a nuclear facility is a challenging, if not daunting, proposition. The situation is made more complicated when the system needs to be designed to satisfy the disparate requirements of a monitoring and a host party - a relationship that could prove to be adversarial. The cooperative design of the elements of the AVNG (Attribute Verification with Neutrons and Gamma Rays) system served as a crucible that exercised the possible pitfalls in the design and implementation of a measurement system that could be used in a host party nuclear facility that satisfied the constraints of operation for both the host and monitoring parties. Some of the issues that needed to be addressed in the joint design were certification requirements of the host party and the authentication requirements of the monitoring party. In this paper the nature of the problem of cooperative design will be introduced. The details of cooperative design revolve around the idiosyncratic nature of the adversarial relationship between the parties involved in a possible measurement regime, particularly if measurements on items that may contain sensitive information are being pursued. The possibility of an adversarial interaction is more likely if an …
Date: May 21, 2010
Creator: Luke, S J
System: The UNT Digital Library
Design of a Rayleigh-Taylor experiment to Measure Strength at High Pressures (open access)

Design of a Rayleigh-Taylor experiment to Measure Strength at High Pressures

None
Date: May 21, 2010
Creator: Mikaelian, K O
System: The UNT Digital Library
Dynamics of Longitudinal Phase-Space Modulations in an rf Compressor for Electron Beams (open access)

Dynamics of Longitudinal Phase-Space Modulations in an rf Compressor for Electron Beams

Free Electron Lasers (FELs) operating in the UV or x-ray radiation spectrum require peak beam currents that are generally higher than those obtainable by present electron sources, thus making bunch compression necessary. Compression, however, may heighten the effects of collective forces and degrade the beam quality. In this paper they provide a framework for investigating some of these effects in rf compressors by focusing on the longitudinal dynamics of small-amplitude density perturbations, which have the potential to cause the disruptive appearance of the so-called microbunching instability. They develop a linear theory valid for low-to-moderate compression factors under the assumption of a 1D impedance model of longitudinal space charge and provide validation against macroparticle simulations.
Date: May 21, 2010
Creator: Venturini, M.; Migliorati, M.; Ronsivalle, C.; Ferrario, M. & Vaccarezza, C.
System: The UNT Digital Library
Full Electromagnetic Simulation of Coherent Synchrotron Radiation via the Lorentz-Boosted Frame Approach (open access)

Full Electromagnetic Simulation of Coherent Synchrotron Radiation via the Lorentz-Boosted Frame Approach

Numerical simulation of some systems containing charged particles with highly relativistic directed motion can by speeded up by orders of magnitude by choice of the proper Lorentz-boosted frame. Orders of magnitude speedup has been demonstrated for simulations from first principles of laser-plasma accelerator, free electron laser, and particle beams interacting with electron clouds. Here we address the application of the Lorentz-boosted frame approach to coherent synchrotron radiation (CSR), which can be strongly present in bunch compressor chicanes. CSR is particularly relevant to the next generation of x-ray light sources and is simultaneously difficult to simulate in the lab frame because of the large ratio of scale lengths. It can increase both the incoherent and coherent longitudinal energy spread, effects that often lead to an increase in transverse emittance. We have adapted the WARP code to simulate CSR emission along a simple dipole bend. We present some scaling arguments for the possible computational speed up factor in the boosted frame and initial 3D simulation results.
Date: May 21, 2010
Creator: Fawley, William M & Vay, Jean-Luc
System: The UNT Digital Library
Iterative Self-Dual Reconstruction on Radar Image Recovery (open access)

Iterative Self-Dual Reconstruction on Radar Image Recovery

Imaging systems as ultrasound, sonar, laser and synthetic aperture radar (SAR) are subjected to speckle noise during image acquisition. Before analyzing these images, it is often necessary to remove the speckle noise using filters. We combine properties of two mathematical morphology filters with speckle statistics to propose a signal-dependent noise filter to multiplicative noise. We describe a multiscale scheme that preserves sharp edges while it smooths homogeneous areas, by combining local statistics with two mathematical morphology filters: the alternating sequential and the self-dual reconstruction algorithms. The experimental results show that the proposed approach is less sensitive to varying window sizes when applied to simulated and real SAR images in comparison with standard filters.
Date: May 21, 2010
Creator: Martins, Charles; Medeiros, Fatima; Ushizima, Daniela; Bezerra, Francisco; Marques, Regis & Mascarenhas, Nelson
System: The UNT Digital Library
Prioritizing Riparian Cooridors for Water Quality Protection in Urbanizing Watersheds (open access)

Prioritizing Riparian Cooridors for Water Quality Protection in Urbanizing Watersheds

This article describes the design of a GIS and remote sensing based analysis tool called the Water Quality Corridor Management model to identify and prioritize highly functioning riparian ecosystems for the preservation of steam corridor conditions.
Date: May 21, 2010
Creator: Atkinson, Samuel F.; Hunter, Bruce & English, April
System: The UNT Digital Library
Radiochemistry as a (rho)R Diagnostic with the RAGS Gas Collection System (open access)

Radiochemistry as a (rho)R Diagnostic with the RAGS Gas Collection System

Radiochemical diagnostic techniques such as gas-phase capsule debris analysis may prove to be successful methods for establishing the success or failure of ignition experiments at the National Ignition Facility (NIF). Samples in the gas phase offer the most direct method of collection by simply pumping out the large target chamber following a NIF shot. The target capsules will be prepared with dopants which will produce radioactive noble gas isotopes upon activation with neutrons. We have designed and constructed the Radchem Apparatus for Gas Sampling (RAGS) in order to collect post-shot gaseous samples for NIF capsule diagnostics. The design of RAGS incorporates multiple stages intended to purify, transfer, and count the radioactive decays from gaseous products synthesized in NIF experiments. At the moment the dopant of choice is {sup 124}Xe, which will undergo (n,{gamma}) and (n, 2n) reactions to produce {sup 125}Xe and {sup 123}Xe. The half-lives of each are on the order of multiple hours and are suitable for long-term gamma-counting. These isotopes and the rest of the gases evolved in a NIF shot will be drawn through the NIF turbo pumps, past the temporarily shuttered cryo pumps (to aid our collection efficiency), and towards the first main portion of …
Date: May 21, 2010
Creator: Nelson, S. L.; Shaughnessy, D. A.; Schneider, D. H.; Stoeffl, W.; Moody, K. J.; Cerjan, C. et al.
System: The UNT Digital Library
Solubility of Phenanthrene in Ternary Mixtures of C1-C4 Alcohols at 298.2 K (open access)

Solubility of Phenanthrene in Ternary Mixtures of C1-C4 Alcohols at 298.2 K

This article discusses the solubility of phenanthrene in ternary mixtures of C1-C4 alcohols at 298.2 K.
Date: May 21, 2010
Creator: Fakhree, Mohammad Amin Abolghassemi; Acree, William E. (William Eugene) & Jouyban, Abolghasem
System: The UNT Digital Library
Co-simulation for performance prediction of integrated building and HVAC systems - An analysis of solution characteristics using a two-body system (open access)

Co-simulation for performance prediction of integrated building and HVAC systems - An analysis of solution characteristics using a two-body system

Integrated performance simulation of buildings and heating, ventilation and airconditioning (HVAC) systems can help reducing energy consumption and increasing occupant comfort. However, no single building performance simulation (BPS) tool offers suffcient capabilities and flexibilities to analyze integrated building systems and to enable rapid prototyping of innovative building and system technologies. One way to alleviate this problem is to use co-simulation to integrate different BPS tools. Co-simulation approach represents a particular case of simulation scenario where at least two simulators solve coupled differential-algebraic systems of equations and exchange data that couples these equations during the time integration. This article analyzes how co-simulation influences consistency, stability and accuracy of the numerical approximation to the solution. Consistency and zero-stability are studied for a general class of the problem, while a detailed consistency and absolute stability analysis is given for a simple two-body problem. Since the accuracy of the numerical approximation to the solution is reduced in co-simulation, the article concludes by discussing ways for how to improve accuracy.
Date: June 21, 2010
Creator: Trcka, Marija; L.M. Hensena, Jan & Wetter, Michael
System: The UNT Digital Library
Co-simulation of innovative integrated HVAC systems in buildings (open access)

Co-simulation of innovative integrated HVAC systems in buildings

Integrated performance simulation of buildings HVAC systems can help in reducing energy consumption and increasing occupant comfort. However, no single building performance simulation (BPS) tool offers sufficient capabilities and flexibilities to analyze integrated building systems and to enable rapid prototyping of innovative building and system technologies. One way to alleviate this problem is to use co-simulation, as an integrated approach to simulation. This article elaborates on issues important for co-simulation realization and discusses multiple possibilities to justify the particular approach implemented in the here described co-simulation prototype. The prototype is validated with the results obtained from the traditional simulation approach. It is further used in a proof-of-concept case study to demonstrate the applicability of the method and to highlight its benefits. Stability and accuracy of different coupling strategies are analyzed to give a guideline for the required coupling time step.
Date: June 21, 2010
Creator: Trcka, Marija; Hensena, Jan L.M. & Wetter, Michael
System: The UNT Digital Library
Extreme ultraviolet mask substrate surface roughness effects on lithography patterning (open access)

Extreme ultraviolet mask substrate surface roughness effects on lithography patterning

In extreme ultraviolet lithography exposure systems, mask substrate roughness induced scatter contributes to LER at the image plane. In this paper, the impact of mask substrate roughness on image plane speckle is explicitly evaluated. A programmed roughness mask was used to study the correlation between mask roughness metrics and wafer plane aerial image inspection. We find that the roughness measurements by top surface topography profile do not provide complete information on the scatter related speckle that leads to LER at the image plane. We suggest at wavelength characterization by imaging and/or scatter measurements into different frequencies as an alternative for a more comprehensive metrology of the mask substrate/multilayer roughness effects.
Date: June 21, 2010
Creator: George, Simi; Naulleau, Patrick; Salmassi, Farhad; Mochi, Iacopo; Gullikson, Eric; Goldberg, Kenneth et al.
System: The UNT Digital Library
Prospective Analysis of DNA Damage and Repair Markers of Lung Cancer Risk from the Prostate, Lung, Colorectal, and Ovarian (PLCO) Cancer Screening Trial (open access)

Prospective Analysis of DNA Damage and Repair Markers of Lung Cancer Risk from the Prostate, Lung, Colorectal, and Ovarian (PLCO) Cancer Screening Trial

None
Date: June 21, 2010
Creator: Sigurdson, A. J.; Jones, I. M.; Wei, Q.; Wu, X.; Spitz, M. R.; Stram, D. et al.
System: The UNT Digital Library