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Deep learning for peptide identification from metaproteomics datasets (open access)

Deep learning for peptide identification from metaproteomics datasets

This article explores a proposed deep-learning-based algorithm called DeepFilter for improving peptide identifications from a collection of tandem mass spectra. The authors find that DeepFilter is believed to generalize properly to new, previously unseen peptide-spectrum-matches and can be readily applied in peptide identification from metaproteomics data.
Date: July 8, 2021
Creator: Feng, Shichao; Sterzenbach, Ryan & Guo, Xuan
Object Type: Article
System: The UNT Digital Library
Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation (open access)

Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation

This article is a study aimed at predicting and enhancing the properties of the blend, as well as exploring the mechanism, of a polylactic acid (PLA)/amorphous cellulose composite system through molecular characterization. The static properties of the amorphous cellulose/PLA blend model and the mechanical response of the material under uniaxial tension were studied by molecular dynamics simulation to establish the structure–property relationship.
Date: June 8, 2021
Creator: Ren, Zechun; Guo, Rui; Zhou, Xinyuan; Bi, Hongjie; Jia, Xin; Xu, Min et al.
Object Type: Article
System: The UNT Digital Library
Semantic Indexing using WordNet Senses (open access)

Semantic Indexing using WordNet Senses

This article discusses semantic indexing using WordNet senses.
Date: October 8, 2000
Creator: Mihalcea, Rada, 1974- & Moldovan, Dan I.
Object Type: Paper
System: The UNT Digital Library
A Logic Programming Framework for Semantic Interpretation with WordNet and PageRank (open access)

A Logic Programming Framework for Semantic Interpretation with WordNet and PageRank

This paper discusses a logic programming framework for semantic interpretation with WordNet and PageRank.
Date: September 8, 2004
Creator: Tarau, Paul; Mihalcea, Rada, 1974- & Figa, Elizabeth
Object Type: Paper
System: The UNT Digital Library
Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses (open access)

Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses

Article on the ion-exchange and associated interfacial reaction mechanisms of silicate glasses. This work reports findings that shed light on the complex ion-exchange mechanisms during glass hydration and enables more detailed understanding of the corrosion and glass-water interactions of silicate glasses which has the potential to impact both science and technology.
Date: April 8, 2021
Creator: Deng, Lu; Miyatani, Katsuaki; Suehara, Michinori; Amma, Shin-ichi; Ono, Madoka; Urata, Shingo et al.
Object Type: Article
System: The UNT Digital Library
Exceptional increase in the creep life of magnesium rare-earth alloys due to localized bond stiffening (open access)

Exceptional increase in the creep life of magnesium rare-earth alloys due to localized bond stiffening

Article describes study in which researchers attribute the 600% increase in creep life in a prototypical Mg–rare earth (RE)–Zn alloy to multiple mechanisms caused by RE–Zn bonding—stabilization of a large volume fraction of strengthening precipitates on slip planes, increase in vacancy diffusion barrier, reduction in activated cross-slip, and enhancement of covalent character and bond strength around Zn solutes along the c-axis of Mg using atomic-scale characterization and first principles calculations.
Date: December 8, 2017
Creator: Choudhuri, Deep; Srivilliputhur, Srinivasan; Gibson, Mark A.; Zheng, Yufeng; Jaeger, David L.; Fraser, Hamish L. et al.
Object Type: Article
System: The UNT Digital Library
Algorithmically Optimized Hemispherical Dome as a Secondary Optical Element for the Fresnel Lens Solar Concentrator (open access)

Algorithmically Optimized Hemispherical Dome as a Secondary Optical Element for the Fresnel Lens Solar Concentrator

This article focuses on a way to maximize the concentration acceptance product (CAP), while using the minimum SOE and receiver geometry at a given f-number and incidence angle (also referred to as the tracking error angle). The laws of polychromatic light refraction along with trigonometry and spherical geometry were utilized to optimize the POE grooves, SOE radius, receiver size, and SOE–receiver spacing.
Date: July 8, 2019
Creator: Qandil, Hassan; Wang, Shuping & Zhao, Weihuan
Object Type: Article
System: The UNT Digital Library
Protein functional module identification method combining topological features and gene expression data (open access)

Protein functional module identification method combining topological features and gene expression data

Article conducting an intensive study on the problems of low recognition efficiency and noise in the overlapping structure of protein functional modules, based on topological characteristics of PPI network. Developing a protein function module recognition method ECTG based on Topological Features and Gene expression data for Protein Complex Identification. The experimental results show that the ECTG algorithm can detect protein functional modules better.
Date: June 8, 2021
Creator: Zhao, Zihao; Xu, Wenjun; Chen, Aiwen; Han, Yueyue; Xia, Shengrong; Xiang, ChuLei et al.
Object Type: Article
System: The UNT Digital Library
Computing microRNA-gene interaction networks in pan-cancer using miRDriver (open access)

Computing microRNA-gene interaction networks in pan-cancer using miRDriver

This article is a study where the authors integrated the multi-omics datasets such as copy number aberration, DNA methylation, gene and microRNA expression to identify the signature microRNA-gene associations from frequently aberrated DNA regions across pan-cancer utilizing a LASSO-based regression approach.
Date: March 8, 2022
Creator: Bose, Banabithi; Moravec, Matthew & Bozdag, Serdar
Object Type: Article
System: The UNT Digital Library
A self-powered wireless motion sensor based on a high-surface area reverse electrowetting-on-dielectric energy harvester (open access)

A self-powered wireless motion sensor based on a high-surface area reverse electrowetting-on-dielectric energy harvester

Article presents a motion-sensing device with the capability of harvesting energy from low-frequency motion activities. Based on the high surface area reverse electrowetting-on-dielectric (REWOD) energy harvesting technique, mechanical modulation of the liquid generates an AC signal, which is modeled analytically and implemented in Matlab and COMSOL.
Date: March 8, 2022
Creator: Tasneem, Nishat Tarannum; Biswas, Dipon K.; Adhikari, Pashupati R.; Gunti, Avinash; Patwary, Adnan B.; Reid, Russell C. et al.
Object Type: Article
System: The UNT Digital Library

Spectroscopic, structural, and strain-dependent analysis of suspended bulk WSe2 sheets

Article utilizing Raman spectroscopy and photoluminescence (PL) spectroscopy to analyze the phononic and electronic parameters in suspended bulk WSe₂ sheets, fabricated utilizing photolithography and wet chemical etching. The findings of this work will be beneficial in analyzing thermal, optical, and mechanical properties of WSe₂ in a suspended platform for its application in electronic, thermoelectric, and mechanical sensors in the future.
Date: February 8, 2022
Creator: Bandyopadhyay, Avra S. & Kaul, Anupama
Object Type: Article
System: The UNT Digital Library
Design of high SERS sensitive substrates based on branched Ti nanorods (open access)

Design of high SERS sensitive substrates based on branched Ti nanorods

Article reports a rational design of branched titanium (Ti) nanorods formed by glancing angle physical vapor deposition and their applications as substrates for surface-enhanced Raman scattering (SERS). The authors investigation provides a mechanism to fabricate sensitive SERS sensors of Ti nanorods that are known to be thermally and chemically stable and compatible with silicon-based electronics.
Date: July 8, 2022
Creator: Abayomi M. Yussuf, Nosirudeen; Li, Jianlin; Jung, Yung Joon & Huang, Hanchen
Object Type: Article
System: The UNT Digital Library
2023-GenCyber-University of North Texas (open access)

2023-GenCyber-University of North Texas

Data management plan for the grant, "2023-GenCyber-University of North Texas."
Date: 2023-09-08/2025-09-08
Creator: Do, Hyunsook
Object Type: Text
System: The UNT Digital Library
Special Issue “Laser Powder Bed Fusion, Direct Energy Deposition and Hybrid Manufacturing of Metals and Alloys” (open access)

Special Issue “Laser Powder Bed Fusion, Direct Energy Deposition and Hybrid Manufacturing of Metals and Alloys”

Article describes hybrid additive manufacturing processes involve the use of different manufacturing techniques to fabricate net shape or near-net shape parts, with enhanced capabilities of heat dissipation, such as those needed in conformal molding, or requiring internal cooling systems, such as, for example, those seen in turbine blades, and for developing other components demanding free form fabrication methods. The combination of these AM processes with material removal processes, such as machining, is the core of the hybrid additive manufacturing concept, together with the full coupling of these processes in an integrated fashion.
Date: October 8, 2022
Creator: Siller Carrillo, Héctor Rafael
Object Type: Article
System: The UNT Digital Library
Child Health and Human Development Extramural Research (open access)

Child Health and Human Development Extramural Research

Data management plan for the grant, "Child Health and Human Development Extramural Research." This study will use the genome-edited human induced pluripotent stem cell (hiPSC) with NOTCH1 knockout to recapitulate the genetic variants of NOTCH1 mutation in the Hypoplastic left heart syndrome (HLHS). It will use advances in the vascularized cardiac organoid directly differentiated from hiPSCs to replay the development and function of cardiomyocytes, endothelial cells, smooth muscle cells, and other cardiac cells in a defined 3D cell culture model by stencil-based micropatterning. It will elucidate the pathogenesis of cardiovascular underdevelopment and dysfunction found in HLHS with NOTCH1 mutation via the NOTCHDELTA/JAG ligand-receptor binding and multicellular crosstalk by single-cell RNA-seq and proteomics analysis.
Date: 2022-09-08/2025-08-31
Creator: Yang, Huaxiao
Object Type: Text
System: The UNT Digital Library
MXene/graphene oxide nanocomposites for friction and wear reduction of rough steel surfaces (open access)

MXene/graphene oxide nanocomposites for friction and wear reduction of rough steel surfaces

Article describes how development of solid lubricant materials that render reliable performance in ambient conditions, are amenable to industrial size and design complexities, and work on engineered surfaces is reported. This report presents the holistic exploration and correlation of structure-property-processing pertaining to the advancement of solid lubrication science.
Date: July 8, 2023
Creator: Macknojia, Ali Zayaan; Ayyagari, Aditya; Shevchenko, Elena V. & Berman, Diana
Object Type: Article
System: The UNT Digital Library