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Polarization-Modulated Second Harmonic Generation Microscopy in Collagen (open access)

Polarization-Modulated Second Harmonic Generation Microscopy in Collagen

Collagen is a key structural protein in the body; several pathological conditions lead to changes in collagen. Among imaging modalities that can be used in vivo, second harmonic generation (SHG) microscopy has a key advantage: it provides {approx}1 {micro}m resolution information about collagen structure as a function of depth. A new technique--polarization-modulated SHG--is presented: it permits simultaneous measurement of collagen orientation, of a lower bound on the magnitude of the second order nonlinear susceptibility tensor, and of the ratio of the two independent elements in this tensor. It is applied to characterizing SHG in collagen and to determining effects of biologically relevant changes in collagen structure. The magnitude of the second harmonic signal in two dimensional images varies with position even in structurally homogeneous tissue; this phenomenon is due to interference between second harmonic light generated by neighboring fibrils, which are randomly oriented parallel or anti-parallel to each other. Studies in which focal spot size was varied indicated that regions where fibrils are co-oriented are less than {approx}1.5 {micro}m in diameter. A quartz reference was used to determine the spot size as well as a lower limit (d{sub xxx} > 0.3 pm/V) for the magnitude of the second order nonlinear …
Date: September 30, 2002
Creator: Stoller, P. C.
System: The UNT Digital Library
A study of B(s)0 to J/psi phi in the D0 experiment and an example of HEP technology transfer (open access)

A study of B(s)0 to J/psi phi in the D0 experiment and an example of HEP technology transfer

After years of preparation, data taking with the upgraded D0 detector at the Tevatron proton-antiproton collider has begun. The large amount of data produced in a p{bar p}-collider requires sophisticated triggers to filter out the interesting events. Described in this thesis is the development of trigger software for the newly implemented Silicon Microstrip Tracker. D0 is a multi-purpose detector with a broad physics program. one area being studied at D0 is B mesons. An algorithm for reconstructing the B{sub s}{sup 0} and B{sub d}{sup 0} mesons and for measuring their lifetimes has been developed and is described in this thesis. The results suggest that an improvement of the current lifetime measurements can be achieved within the next two years. The reconstruction of a J/{psi} meson forms the basis for a wide range of b-physics. Data taken with the muon system during the commissioning period of the detector has been analyzed and a signal for the J/{psi} meson has been found. Systematic transfer of HEP technologies into other areas and their commercial exploitation plays an important role in the future of particle physics. An area of particular interest is DNA sequencing as shown by the recent completion of the sequencing of …
Date: January 1, 2002
Creator: Bauer, Daniela Ursula
System: The UNT Digital Library
Development of trigger software for the silicon and fibre trackers and a study of B meson lifetimes for the D0 experiment (open access)

Development of trigger software for the silicon and fibre trackers and a study of B meson lifetimes for the D0 experiment

The D0 detector has recently undergone a major upgrade to maximize its potential to fully exploit Run II at the Tevatron 2 TeV proton-antiproton collider. The upgrade includes a completely new central tracking system with an outer scintillating fiber tracker and an inner silicon vertex detector. This thesis describes the development of the software to ''unpack'' the raw data from the central tracking detectors into a useful form, and the development of the Level 3 trigger algorithms to cluster the hit information from these detectors. One of the many areas of physics that is being studied by the D0 experiment is the physics of B mesons, particularly that involving CP violation. The second part of the thesis details a constrained mass fitting tool written to aid the reconstruction of B particles, and a Monte Carlo study into measuring the lifetime of B{sup +} and B{sup 0} mesons. This thesis lays the foundations for the means by which physics is extracted from the vast amount of Tevatron data--the trigger--and illustrates how analyses will proceed through the key reconstruction of heavy quarks.
Date: January 1, 2002
Creator: Illingworth, Robert Arthur
System: The UNT Digital Library
Constructing Predictive Estimates for Worker Exposure to Radioactivity During Decommissioning: Analysis of Completed Decommissioning Projects (open access)

Constructing Predictive Estimates for Worker Exposure to Radioactivity During Decommissioning: Analysis of Completed Decommissioning Projects

An analysis of completed decommissioning projects is used to construct predictive estimates for worker exposure to radioactivity during decommissioning activities. The preferred organizational method for the completed decommissioning project data is to divide the data by type of facility, whether decommissioning was performed on part of the facility or the complete facility, and the level of radiation within the facility prior to decommissioning (low, medium, or high). Additional data analysis shows that there is not a downward trend in worker exposure data over time. Also, the use of a standard estimate for worker exposure to radioactivity may be a best estimate for low complete storage, high partial storage, and medium reactor facilities; a conservative estimate for some low level of facility radiation facilities (reactor complete, research complete, pits/ponds, other), medium partial process facilities, and high complete research facilities; and an underestimate for the remaining facilities. Limited data are available to compare different decommissioning alternatives, so the available data are reported and no conclusions can been drawn. It is recommended that all DOE sites and the NRC use a similar method to document worker hours, worker exposure to radiation (person-rem), and standard industrial accidents, injuries, and deaths for all completed decommissioning …
Date: October 1, 2002
Creator: Dettmers, Dana Lee & Eide, Steven Arvid
System: The UNT Digital Library
Study of the Delta (1232) Using Double Polarization Asymmetries (open access)

Study of the Delta (1232) Using Double Polarization Asymmetries

An extensive experimental program to measure the spin structure of the nucleus is underway in Hall B at Jefferson Lab using a polarized electron beam incident on a polarized target. Spin degrees of freedom offer the possibility to test, in an independent way, existing models of resonance electro-production. The present analysis selects the Delta{sup +} (1232) in the exclusive channel {rvec p}({rvec e}, e'p)pi{sup 0} from data of the EG1 run period, taken in the Fall of 1998, to extract single and double asymmetries in a Q{sup 2} range from 0.5 to 1.5 GeV{sup 2}/c{sup 2}. Results of the asymmetries are presented as a function of momentum transfer Q{sup 2}. A comparison with the Effective Lagrangian Model by R. Davidson and N. Mukhopadhyay, the unitary isobar model MAID, and the dynamic model by Sato and Lee was performed. The data were found to be generally in good agreement with the models and a x{sup 2} comparison preferred the Sato-Lee model, which is tailored for the Delta (1232) photo- and electro-production. The present results are the first measurement of asymmetries for the exclusive reaction {rvec p}({rvec e}, e'p)pi{sup 0} and will provide new constraints for the models.
Date: March 1, 2002
Creator: Biselli, Angela
System: The UNT Digital Library
Nonphotochemical Hole-Burning Studies of Energy Transfer Dynamics in Antenna Complexes of Photosynthetic Bacteria (open access)

Nonphotochemical Hole-Burning Studies of Energy Transfer Dynamics in Antenna Complexes of Photosynthetic Bacteria

This thesis contains the candidate's original work on excitonic structure and energy transfer dynamics of two bacterial antenna complexes as studied using spectral hole-burning spectroscopy. The general introduction is divided into two chapters (1 and 2). Chapter 1 provides background material on photosynthesis and bacterial antenna complexes with emphasis on the two bacterial antenna systems related to the thesis research. Chapter 2 reviews the underlying principles and mechanism of persistent nonphotochemical hole-burning (NPHB) spectroscopy. Relevant energy transfer theories are also discussed. Chapters 3 and 4 are papers by the candidate that have been published. Chapter 3 describes the application of NPHB spectroscopy to the Fenna-Matthews-Olson (FMO) complex from the green sulfur bacterium Prosthecochloris aestuarii; emphasis is on determination of the low energy vibrational structure that is important for understanding the energy transfer process associated within three lowest energy Q{sub y}-states of the complex. The results are compared with those obtained earlier on the FMO complex from Chlorobium tepidum. In Chapter 4, the energy transfer dynamics of the B800 molecules of intact LH2 and B800-deficient LH2 complexes of the purple bacterium Rhodopseudomonas acidophila are compared. New insights on the additional decay channel of the B800 ring of bacteriochlorophyll{sub a} (BChl{sub a}) …
Date: June 27, 2002
Creator: Matsuzaki, Satoshi
System: The UNT Digital Library
Monitoring microbe-induced physical property changes using high-frequency acoustic waveform data: Toward the development of a microbial megascope (open access)

Monitoring microbe-induced physical property changes using high-frequency acoustic waveform data: Toward the development of a microbial megascope

A laboratory investigation was undertaken to determine the effect of microbe generated gas bubbles in controlled, saturated sediment columns utilizing a novel technique involving acoustic wave propagation. Specifically, the effect of denitrifying bacteria on saturated flow conditions was evaluated in light of the stimulated production of N{sub 2} gas and the resulting plugging of the pore throats. The propagation of high frequency acoustic waves through the sediment columns was used to locate those regions in the column where gas accumulation occurred. Over a period of six weeks, regions of gas accumulation resulted in the attenuation of acoustic wave energies with the decreases in amplitude typically greater than one order of magnitude.
Date: May 20, 2002
Creator: Williams, Kenneth Hurst
System: The UNT Digital Library
Critical Phenomena of the Disorder Driven Localization-Delocalization Transition (open access)

Critical Phenomena of the Disorder Driven Localization-Delocalization Transition

Metal-to-insulator transitions are generally linked to two phenomena: electron-electron correlations and disorder. Although real systems are usually responding to a mixture of both, they can be classified as undergoing a Mott-transition, if the former process dominates, or an Anderson-transition, if the latter dominates. High-T{sub c} superconductors, e.g., are a candidate for the first class. Materials in which disorder drives the metal-to-insulator transition include doped semiconductors and amorphous materials. After briefly reviewing the previous research on transport in disordered materials and the disorder-induced metal-to-insulator transition, a summary of the model and the methods used in subsequent chapters is given.
Date: December 31, 2002
Creator: Ruhlander, Marc
System: The UNT Digital Library
Radiative transitions in InGaN quantum-well structures (open access)

Radiative transitions in InGaN quantum-well structures

InGaN based light emitting devices demonstrate excellent luminescence properties and have great potential in lighting applications. Though these devices are already being produced on an industrial scale, the nature of their radiative transition is still not well understood. In particular, the role of the huge (>1MV/cm), built-in electric field in these transitions is still under debate. The luminescence characteristics of InGaN quantum well structures were investigated as a function of excitation power, temperature, and biaxial strain, with an intent of discerning the effects of the electric field and inhomogeneous indium distribution in the QW on the radiative transition. It was found that the luminescence energy did not scale only with the indium concentration but that the QW thickness must also be taken into account. The thickness affects the transition energy due to quantum confinement and carrier separation across a potential drop in the QW. The luminescence peak width was shown to increase with increased indium fraction, due to increased indium inhomogeneity. The carrier lifetime increased exponentially with QW thickness and luminescence wavelength, due to increased carrier separation. Measuring the luminescence energy and carrier lifetime as a function of excitation density showed that the electric field can be screened by strong …
Date: June 27, 2002
Creator: Shapiro, Noad Asaf
System: The UNT Digital Library
A Study of Selected Properties and Applications of AlMgB14 and Related Composites: Ultra-Hard Materials (open access)

A Study of Selected Properties and Applications of AlMgB14 and Related Composites: Ultra-Hard Materials

This research presents a study of the hardness, electrical, and thermal properties AlMgB{sub 14} containing Al{sub 2}MgO{sub 4} spinel. This research also investigated how much Al{sub 2}MgO{sub 4} spinel consistently forms with AlMgB{sub 14}, if AlMgB{sub 14} materials can be produced by hot isostatic pressing (HIP), what effects TiC and TiB{sub 2} have on this composite material, and the importance of mechanical alloying. Included also is a study of the variation in hardness measurements and how they relate to SI units. Heretofore, all ultra-hard materials (hardness > 40 GPA) have been found to be cubic in structure, electrical insulators, and expensive; the behavior of AlMgB{sub 14}, which in certain specimens and compositions can have hardness values greater than 40 GPa, is therefore quite unusual since it is non-cubic, conductive, and moderate in cost. This offers an opportunity to investigate the relationship between hardness, thermal, and electrical properties from a new perspective. The main purpose of this project was to characterize the different properties of the AlMgB{sub 14} materials and to demonstrate that this material can be made in bulk. The technologies used for this study include microhardness measurement techniques, scanning electron microscopy, energy dispersive spectroscopy, x-ray diffraction spectroscopy, x-ray diffraction …
Date: May 28, 2002
Creator: Lewis, Theron L.
System: The UNT Digital Library
Nonphotochemical Hole-Burning Imaging Studies of in vitro Carcinoma and Normal Cells Utilizing a Mitochondrial Specific Dye (open access)

Nonphotochemical Hole-Burning Imaging Studies of in vitro Carcinoma and Normal Cells Utilizing a Mitochondrial Specific Dye

Low temperature Nonphotochemical Hole Burning (NPHB) Spectroscopy of the dye rhodamine 800 (MF680) was applied for the purpose of discerning differences between cultured normal and carcinoma ovarian surface epithelial (OSE) cells. Both the cell lines were developed and characterized at the Mayo Clinic (Rochester, MN), with the normal cell line having been transfected with a strain of temperature sensitive Simian Virus 40 Large T Antigen (SV40) for the purpose of extending the life of the cell culture without inducing permanent changes in the characteristics of the cell line. The cationic lipophilic fluorophore rhodamine 800 preferentially locates in in situ mitochondria due to the high lipid composition of mitochondria and the generation of a large negative membrane potential (relative to the cellular cytoplasm) for oxidative phosphorylation. Results presented for NPHB of MF680 located in the cells show significant differences between the two cell lines. The results are interpreted on the basis of the NPHB mechanism and characteristic interactions between the host (cellular mitochondrial) and the guest (MF680) in the burning of spectral holes, thus providing an image of the cellular ultrastructure. Hole growth kinetics (HGK) were found to differ markedly between the two cell lines, with the carcinoma cell line burning …
Date: June 27, 2002
Creator: Walsh, Richard Joseph
System: The UNT Digital Library
Low energy electron diffraction (LEED) and sum frequency generation (SFG) vibrational spectroscopy studies of solid-vacuum, solid-air and solid-liquid interfaces (open access)

Low energy electron diffraction (LEED) and sum frequency generation (SFG) vibrational spectroscopy studies of solid-vacuum, solid-air and solid-liquid interfaces

Electron based surface probing techniques can provide detailed information about surface structure or chemical composition in vacuum environments. The development of new surface techniques has made possible in situ molecular level studies of solid-gas interfaces and more recently, solid-liquid interfaces. The aim of this dissertation is two-fold. First, by using novel sample preparation, Low Energy Electron Diffraction (LEED) and other traditional ultra high vacuum (UHV) techniques are shown to provide new information on the insulator/vacuum interface. The surface structure of the classic insulator NaCl has been determined using these methods. Second, using sum frequency generation (SFG) surface specific vibrational spectroscopy studies were performed on both the biopolymer/air and electrode/electrolyte interfaces. The surface structure and composition of polyetherurethane-silicone copolymers were determined in air using SFG, atomic force microscopy (AFM), and X-ray photoelectron spectroscopy (XPS). SFG studies of the electrode (platinum, gold and copper)/electrolyte interface were performed as a function of applied potential in an electrochemical cell.
Date: August 19, 2002
Creator: Hoffer, Saskia
System: The UNT Digital Library
Design of Surface Micromachined Compliant MEMS (open access)

Design of Surface Micromachined Compliant MEMS

The consideration of compliant mechanisms as Microelectromechanical Systems (MEMS) is the focus of this research endeavor. MEMS are micron to millimeter devices that combine electrical, mechanical, and information processing capabilities on the same device. These MEMS need some mechanical motion or parts that move relative to each other. This relative motion, using multiple parts, is not desired because of the assembly requirement and the friction introduced. Compliant devices limits or eliminates friction and the need for multi-component assembly. Compliant devices improve designs by creating single piece mechanisms. The purpose of this research is to validate surface micromachining as a viable fabrication process for compliant MEMS designs. Specifically, this research has sought to fabricate a micro-compliant gripper and a micro-compliant clamp to illustrate the process. While other researchers have created compliant MEMs, most have used comb-drive actuation methods and bulk micromachining processes. This research focused on fully-compliant devices that use device flexibility for motion and actuation. Validation of these compliant MEMS is achieved by structural optimization of device design and functional performance testing. This research contributes to the ongoing research in MEMS by evaluating the potential of using surface micromachining as a process for fabricating compliant micro-mechanisms.
Date: December 31, 2002
Creator: Bradley, Joe Anthony
System: The UNT Digital Library
Implementation of MPICH on Top of MP{_}Lite (open access)

Implementation of MPICH on Top of MP{_}Lite

The goal of this thesis is to develop a new Channel Interface device for the MPICH Implementation of the MPI (Message Passing Interface) standard using MP{_}Lite. MP{_}Lite is a lightweight message-passing library that is not a full MPI implementation, but offers high performance MPICH (Message Passing Interface CHameleon) is a full implementation of the MPI standard that has the p4 library as the underlying communication device for TCP/IP networks. By integrating MP{_}Lite as a Channel Interface device in MPICH, a parallel programmer can utilize the full MPI implementation of MPICH as well as the high bandwidth offered by MP{_}Lite. There are several layers in the MPICH library where one can tie a new device. The Channel Interface is the lowest layer that requires very few functions to add a new device. By attaching MP{_}Lite to MPICH at the lowest level, the Channel Interface, almost all of the performance of the MP{_}Lite library can be delivered to the applications using MPICH. MP{_}Lite can be implemented either as a blocking or a non-blocking Channel Interface device. The performance was measured on two separate test clusters, the PC and the Alpha miniclusters, having Gigabit Ethernet connections. The PC cluster has two 1.8 GHz …
Date: June 27, 2002
Creator: Selvarajan, Shoba
System: The UNT Digital Library
Imaging Catalytic Surfaces by Multiplexed Capillary Electrophoresis With Absorption Detection (open access)

Imaging Catalytic Surfaces by Multiplexed Capillary Electrophoresis With Absorption Detection

A new technique for in situ imaging and screening heterogeneous catalysts by using multiplexed capillary electrophoresis with absorption detection was developed. By bundling the inlets of a large number of capillaries, an imaging probe can be created that can be used to sample products formed directly from a catalytic surface with high spatial resolution. In this work, they used surfaces made of platinum, iron or gold wires as model catalytic surfaces for imaging. Various shapes were recorded including squares and triangles. Model catalytic surfaces consisting of both iron and platinum wires in the shape of a cross were also imaged successfully. Each of the two wires produced a different electrochemical product that was separated by capillary electrophoresis. Based on the collected data they were able to distinguish the products from each wire in the reconstructed image.
Date: August 27, 2002
Creator: Christodoulou, Michael
System: The UNT Digital Library
Educational Corporate Social Responsibility in Mexico (open access)

Educational Corporate Social Responsibility in Mexico

Thesis written by a student in the UNT Honors College discussing Mexico's educational system and corporate social responsibility programs and whether these actually respond to the needs of Mexican schools.
Date: Spring 2002
Creator: Cunningham, Kenda
System: The UNT Digital Library
Social Implications of Modeling (open access)

Social Implications of Modeling

Thesis written by a student in the UNT Honors College discussing the interaction of humans with the environment, including issues with water, consumption, reproduction, and groundwater in Texas.
Date: Spring 2002
Creator: Reams, Randall S.
System: The UNT Digital Library
Kevin (open access)

Kevin

Short story written by a student in the UNT Honors College about a group of people observing a friend as he delves into films and the occult.
Date: March 18, 2002
Creator: Saxon, Jared
System: The UNT Digital Library
Arrival Survival and Adaptation: The Quest for Gender Identity Among Female Mexican Immigrants (open access)

Arrival Survival and Adaptation: The Quest for Gender Identity Among Female Mexican Immigrants

Honors thesis written by a student in the UNT Honors College discussing anthropological issues for female anthropologists of color while researching the lives of several Latinas in Denton, Texas.
Date: Spring 2002
Creator: Vega, Sujey
System: The UNT Digital Library
Characteristics of Musicians' Earplugs as a Function of Jaw Position (open access)

Characteristics of Musicians' Earplugs as a Function of Jaw Position

Thesis written by a student in the UNT Honors College discussing the effects of different earplugs on the jaw movements of musicians.
Date: Summer 2002
Creator: Archer, Jennifer A.
System: The UNT Digital Library
A Study of Atomic Ordering in III-V Semiconductors (open access)

A Study of Atomic Ordering in III-V Semiconductors

Thesis written by a student in the UNT Honors College discussing semiconductors and band structure, the temperature-induced variation of the band structure, the atomic structure of III-V materials, atomic ordering of the band structure, and experimental techniques regarding atomic ordering of CuPt-B.
Date: Summer 2002
Creator: Cottier, Ryan J.
System: The UNT Digital Library
Flames II (open access)

Flames II

Thesis written by a student in the UNT Honors College discussing the authors composition of a musical piece called Flames II. He includes his influences, techniques, and sheet music.
Date: Summer 2002
Creator: Reagan, Brenton S.
System: The UNT Digital Library

Evolutions: A Study of George Crumb and Vox Balaenae

Access: Use of this item is restricted to the UNT Community
Thesis written by a student in the UNT Honors College discussing the life of George Crumb, his compositions, and the natural world as his inspiration for Vox Balaenae.
Date: Summer 2002
Creator: Wilhelms, Jennifer Ann
System: The UNT Digital Library
The Austen Women: A Look at Character (open access)

The Austen Women: A Look at Character

Thesis written by a student in the UNT Honors College discussing female characters of Jane Austin's novels and how they achieve happiness.
Date: Autumn 2002
Creator: Henderson, Angela
System: The UNT Digital Library