Here we describe a simple micromolding method to construct three-dimensional arrays of organotypic epithelial tissue structures that approximate in vivo histology. An elastomeric stamp containing an array of posts of defined geometry and spacing is used to mold microscale cavities into the surface of type I collagen gels. Epithelial cells are seeded into the cavities and covered with a second layer of collagen. The cells reorganize into hollow tissues corresponding to the geometry of the cavities. Patterned tissue arrays can be produced in 3-4 h and will undergo morphogenesis over the following one to three days. The protocol can easily be adapted to study a variety of tissues and aspects of normal and neoplastic development.

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In the continuous effort to improve antiproton stacking rate, a new type of equalizers has been developed and installed in antiproton accumulator. The R&D of these new equalizers is described in this paper. Equalizers are used in Fermilab antiproton stochastic cooling to compensate frequency response of the cooling system. Usually both amplitude and phase compensations are needed. However in most cases it is difficult to achieve a satisfactory compensation for both because of their interdependence. To make it more difficult is that in some cases large compensations (10 to 20 db of amplitude compensation or more than 100 degree of phase compensation) are needed near the low or high ends of a frequency band. Recently a new compensation scheme of equalizers is proposed for Fermilab antiproton accumulator. This scheme originated from the requirement to maximize the system performance resulting in a request for the phase of the cooling system transfer function to be extremely flat. For this kind of phase correction, a new type of equalizers has been developed.

We introduce a simple polar fluid model for the thermodynamics of dense supercritical water based on a Buckingham (exp-6) core and point dipole representation of the water molecule. The proposed exp6-polar thermodynamics, based on ideas originally applied to dipolar hard spheres, performs very well when tested against molecular dynamics simulations. Comparisons of the model predictions with experimental data available for supercritical water yield excellent agreement for the shock Hugoniot, isotherms and sound speeds, and are also quite good for the self-diffusion constant and relative dielectric constant. We expect the present approach to be also useful for other small polar molecules and their mixtures.

Plutonium and its alloys exhibit complex phase diagrams that imply anomalous lattice dynamics near phase stability boundaries. Specifically, the TA [111] phonon branch in Ga-stabilized {delta}-Pu at room temperature shows a pronounced soft mode at the zone boundary, which suggests a possible connection to the martensitic transformation from the fcc {delta}-phase to the monoclinic {alpha}{prime}-phase at low temperatures. This work is a study of the lattice dynamics of this system by x-ray thermal diffuse scattering. The results reveal little temperature dependence of the phonon frequencies, thus indicating that kinetic phonon softening is not responsible for this phase transition.

The pulse radiolysis of N2O saturated aqueous solutions of KSCN was studied under neutral pH conditions. The observed optical absorption spectrum of the SCN• radical in solution is more complex than previously reported, but it is in good agreement with that measured in the gas phase. Kinetic traces at 330 nm and 472 nm corresponding to SCN• and (SCN)2•¯, respectively, were fit using a Monte Carlo simulation kinetic model. The rate coefficient for the oxidation of SCN¯ ions by OH radicals, an important reaction used in competition kinetics measurements, was found to be 1.4 ± 0.1 x 1010 M-1 s-1, about 30 % higher than the normally accepted value. A detailed discussion of the reaction mechanism is presented.

We argue that a primary focus on energy efficiency may not be sufficient to slow (and ultimately reverse) the growth in total energy consumption and carbon emissions. Instead, policy makers need to return to an earlier emphasis on"conservation," with energy efficiency seen as a means rather than an end in itself. We briefly review the concept of"intensive" versus"extensive" variables (i.e., energy efficiency versus energy consumption), and why attention to both consumption and efficiency is essential for effective policy in a carbon- and oil-constrained world with increasingly brittle energy markets. To start, energy indicators and policy evaluation metrics need to reflect energy consumption as well as efficiency. We introduce the concept of"progressive efficiency," with the expected or required level of efficiency varying as a function of house size, appliance capacity, or more generally, the scale of energy services. We propose introducing progressive efficiency criteria first in consumer information programs (including appliance labeling categories) and then in voluntary rating and recognition programs such as ENERGY STAR. As acceptance grows, the concept could be extended to utility rebates, tax incentives, and ultimately to mandatory codes and standards. For these and other programs, incorporating criteria for consumption as well as efficiency offers a path …

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Ion-optics calculations were performed for a new ion source and injection beam line. This source, which can accept both solid and gaseous targets, will be installed onto the 1-MV BioAMS spectrometer at the Center for Accelerator Mass Spectrometry, located at Lawrence Livermore National Laboratory and will augment the current LLNL cesium-sputter solid sample ion source. The ion source and its associated injection beam line were designed to allow direct quantification of {sup 14}C/{sup 12}C and {sup 3}H/{sup 1}H isotope ratios from both solid and gaseous targets without the need for isotope switching. Once installed, this source will enable the direct linking of a nanoflow LC system to the spectrometer to provide for high-throughput LC-AMS quantitation from a continuous flow. Calculations show that, for small samples, the sensitivity of the gas-accepting ion source could be precision limited but zeptomole quantitation should be feasible.

A search for TeV-PeV muon neutrinos from unresolved sources was performed on AMANDA-II data collected between 2000 and 2003 with an equivalent livetime of 807 days. This diffuse analysis sought to find an extraterrestrial neutrino flux from sources with non-thermal components. The signal is expected to have a harder spectrum than the atmospheric muon and neutrino backgrounds. Since no excess of events was seen in the data over the expected background, an upper limit of E{sup 2}{Phi}{sub 90%C.L.} < 7.4 x 10{sup -8} GeV cm{sup -2} s{sup -1} sr{sup -1} is placed on the diffuse flux of muon neutrinos with a {Phi} {proportional_to} E{sup -2} spectrum in the energy range 16 TeV to 2.5 PeV. This is currently the most sensitive {Phi} {proportional_to} E{sup -2} diffuse astrophysical neutrino limit. We also set upper limits for astrophysical and prompt neutrino models, all of which have spectra different than {Phi} {proportional_to} E{sup -2}.

This paper describes the AC-coupled, single-sided, p-in-n silicon microstrip sensors used in the Semiconductor Tracker (SCT) of the ATLAS experiment at the CERN Large Hadron Collider (LHC). The sensor requirements, specifications and designs are discussed, together with the qualification and quality assurance procedures adopted for their production. The measured sensor performance is presented, both initially and after irradiation to the fluence anticipated after 10 years of LHC operation. The sensors are now successfully assembled within the detecting modules of the SCT, and the SCT tracker is completed and integrated within the ATLAS Inner Detector. Hamamatsu Photonics Ltd. supplied 92.2percent of the 15,392 installed sensors, with the remainder supplied by CiS.

Global changes in gene expression occur during tumor progression, as indicated by expression profiling of metastatic tumors. How this occurs is poorly understood. SATB1 functions as a genome organizer by folding chromatin via tethering multiple genomic loci and recruiting chromatin remodeling enzymes to regulate chromatin structure and expression of a large number of genes. Here we show that SATB1 is expressed at high levels in aggressive breast cancer cells, and is undetectable in non-malignant breast epithelial cells. Importantly, RNAi-mediated removal of SATB1 from highly-aggressive MDA-MB-231 cells altered the expression levels of over 1200 genes, restored breast-like acinar polarity in three-dimensional cultures, and prevented the metastastic phenotype in vivo. Conversely, overexpression of SATB1 in the less-aggressive breast cancer cell line Hs578T altered the gene expression profile and increased metastasis dramatically in vivo. Thus, SATB1 is a global regulator of gene expression in breast cancer cells, directly regulating crucial metastasis-associated genes, including ERRB2 (HER2/NEU), TGF-{beta}1, matrix metalloproteinase 3, and metastasin. The identification of SATB1 as a protein that re-programs chromatin organization and transcription profiles to promote breast cancer metastasis suggests a new model for metastasis and may provide means of therapeutic intervention.

Large-scale video processing systems are needed to support human analysis of massive collections of image streams. Video, from both current small-format and future large-format camera systems, constitutes the single largest data source of the near future, dwarfing the output of all other data sources combined. A critical component to further advances in the processing and analysis of such video streams is the ability to register successive video frames into a common coordinate system at the pixel level. This capability enables further downstream processing, such as background/mover segmentation, 3D model extraction, and compression. We present here our recent work on computing these correspondences. We employ coarse-to-fine hierarchical approach, matching pixels from the domain of a source image to the domain of a target image at successively higher resolutions. Our diamond-style image hierarchy, with total pixel counts increasing by only a factor of two at each level, improves the prediction quality as we advance from level to level, and reduces potential grid artifacts in the results. We demonstrate the quality our approach on real aerial city imagery. We find that registration accuracy is generally on the order of one quarter of a pixel. We also benchmark the fundamental processing kernels on the …

InN nanorods were grown on a, c-, and r-plane of sapphire and also on Si (111) and GaN (0001) by non-catalytic, template-free hydride metal-organic vapor phase epitaxy and studied by transmission electron microscopy, electron energy loss (EELS) and photoluminescence (PL) at room temperature. These nanocrystals have different shapes and different faceting depending on the substrate used and their crystallographic orientation. EELS measurements have confirmed the high purity of these crystals. The observed PL peak was in the range of 0.9-0.95 eV. The strongest PL intensity was observed for the nanocrystals with the larger diameters.

The BaBar experiment at the Stanford Linear Accelerator Center has been using two polycrystalline chemical vapor deposition (pCVD) diamonds and 12 silicon PIN diodes for radiation monitoring and protection of the Silicon Vertex Tracker (SVT). We have used the pCVD diamonds for more than 3 years, and the PIN diodes for 7 years. We will describe the SVT and SVT radiation monitoring system as well as the operational difficulties and radiation damage effects on the PIN diodes and pCVD diamonds in a high-energy physics environment.

The hyperfine-induced 2s2p {sup 3}P{sub 0}-2s{sup 2} {sup 1}S{sub 0} transition rate for Be-like {sup 47}Ti{sup 18+} was recently measured in a storage-ring experiment by Schippers et al. [Phys. Rev. Lett. 98, 033001 (2007)]. The measured value of 0.56(3) s{sup -1} is almost 60% larger than the theoretical value of 0.356 s{sup -1} from a multiconfiguration Dirac-Fock calculation by Marques et al. [Phys. Rev. A 47, 929 (1993)]. In this work, we use a large-scale relativistic configuration-interaction method to calculate these hyperfine-induced rates for ions with Z = 6-92. Coherent hyperfine-quenching effects between the 2s2p {sup 1,3}P{sub 1} states are included in a perturbative as well as a radiation damping approach. Contrary to the claims of Marques et al., contributions from the {sup 1}P{sub 1} state are substantial and lead to a hyperfine-induced rate of 0.67 s{sup -1}, in better agreement with, though larger than, the measured value.

Climate, vegetation cover, and management create fine-scaleheterogeneity in unirrigated agricultural regions, with important but notwell-quantified consequences for spatial and temporal variations insurface CO2, water, and heat fluxes. We measured eddy covariance fluxesin seven agricultural fields--comprising winter wheat, pasture, andsorghum--in the U.S. Southern Great Plains (SGP) during the 2001-2003growing seasons. Land-cover was the dominant source of variation insurface fluxes, with 50-100 percent differences between fields planted inwinter-spring versus fields planted in summer. Interannual variation wasdriven mainly by precipitation, which varied more than two-fold betweenyears. Peak aboveground biomass and growing-season net ecosystem exchange(NEE) of CO2 increased in rough proportion to precipitation. Based on apartitioning of gross fluxes with a regression model, ecosystemrespiration increased linearly with gross primary production, but with anoffset that increased near the time of seed production. Because theregression model was designed for well-watered periods, it successfullyretrieved NEE and ecosystem parameters during the peak growing season,and identified periods of moisture limitation during the summer. Insummary, the effects of crop type, land management, and water limitationon carbon, water, and energy fluxes were large. Capturing the controllingfactors in landscape scale models will be necessary to estimate theecological feedbacks to climate and other environmental impactsassociated with changing human needs for agricultural production of …

The Generation IV International Forum (GIF) emphasizes proliferation resistance and physical protection (PR&PP) as a main goal for future nuclear energy systems. The GIF PR&PP Working Group has developed a methodology for the evaluation of these systems. As an application of the methodology, Markov model has been developed for the evaluation of proliferation resistance and is demonstrated for a hypothetical Example Sodium Fast Reactor (ESFR) system. This paper presents the case of diversion by the facility owner/operator to obtain material that could be used in a nuclear weapon. The Markov model is applied to evaluate material diversion strategies. The following features of the Markov model are presented here: (1) An effective detection rate has been introduced to account for the implementation of multiple safeguards approaches at a given strategic point; (2) Technical failure to divert material is modeled as intrinsic barriers related to the design of the facility or the properties of the material in the facility; and (3) Concealment to defeat or degrade the performance of safeguards is recognized in the Markov model. Three proliferation risk measures are calculated directly by the Markov model: the detection probability, technical failure probability, and proliferation time. The material type is indicated by …

The need to consider aqueous and sorption kinetics andmicrobiological processes arises in many subsurface problems. Ageneral-rate expression has been implemented into the TOUGHREACTsimulator, which considers multiple mechanisms (pathways) and includesmultiple product, Monod, and inhibition terms. This paper presents aformulation for incorporating kinetic rates among primary species intomass-balance equations. The space discretization used is based on aflexible integral finite difference approach that uses irregular griddingto model bio-geologic structures. A general multi-region model forhydrological transport interacted with microbiological and geochemicalprocesses is proposed. A 1-D reactive transport problem with kineticbiodegradation and sorption was used to test the enhanced simulator,which involves the processes that occur when a pulse of water containingNTA (nitrylotriacetate) and cobalt is injected into a column. The currentsimulation results agree very well with those obtained with othersimulators. The applicability of this general multi-region model wasvalidated by results from a published column experiment ofdenitrification and sulfate reduction. The matches with measured nitrateand sulfate concentrations were adjusted with the interficial areabetween mobile hydrological and immobile biological regions. Resultssuggest that TOUGHREACT can not only be a useful interpretative tool forbiogeochemical experiments, but also can produce insight into processesand parameters of microscopic diffusion and their interplay withbiogeochemical reactions. The geometric- and process-based multi-regionmodel may provide …

Traditionally, thin metal foils are employed for optical transition radiation (OTR) beam diagnostics but the possibility of shorting accelerator insulating surfaces and modifying accelerating fields are concerns. The successful utilization of dielectric foils in place of metal ones could alleviate these issues but necessitates more understanding of the OTR data for inferring desired beam parameters because of the dielectric's finite permittivity. Additionally, the temperature dependence of the relevant foil parameters due to beam heating should be accounted for. Here, we present and discuss sample synthetic diagnostic results of Kapton OTR spot-size measurements from the Flash X-Ray (FXR) accelerator which studies these and sightline effects. These simulations show that in some cases, the observed spot-sizes and radii are noticeably larger than the beam radii.

Recent breakthroughs in synthesis in nanosciences have achieved control of size and shapes of nanoparticles that are relevant for catalyst design. In this article, we review the advance of synthesis of nanoparticles, fabrication of two and three dimensional model catalyst system, characterization, and studies of activity and selectivity. The ability to synthesize monodispersed platinum and rhodium nanoparticles in the 1-10 nm range permitted us to study the influence of composition, structure, and dynamic properties of monodispersed metal nanoparticle on chemical reactivity and selectivity. We review the importance of size and shape of nanoparticles to determine the reaction selectivity in multi-path reactions. The influence of metal-support interaction has been studied by probing the hot electron flows through the metal-oxide interface in catalytic nanodiodes. Novel designs of nanoparticle catalytic systems are discussed.

The authors present improved measurements of the branching fractions and CP asymmetries in the two-body decays B{sup 0} {yields} {pi}{sup 0}{pi}{sup 0}, B{sup 0} {yields} K{sup 0}{pi}{sup 0} and B{sup 0} {yields} K{sup +}{pi}{sup -} as well as the quasi two-body B{sup 0} {yields} K{sub 1}(1270){sup +} {pi}{sup -} and B{sup 0} {yields} K{sub 1}(1400){sup +} {pi}{sup -} decays. These updated measurements are made using the complete set of BABAR data taken at the Y(4S) resonance, collected between 1999 and 2007 at the PEP-II collider at SLAC.

Brookhaven National Laboratory is in the process of designing a new Electron Synchrotron for scientific research using synchrotron radiation. This facility, called the 'National Synchrotron Light Source II' (NSLS-II), will provide x-ray radiation of ultra-high brightness and exceptional spatial and energy resolution. It will also provide advanced insertion devices, optics, detectors, and robotics, and a suite of scientific instruments designed to maximize the scientific output of the facility. The project scope includes the design, construction, installation, and commissioning of the following accelerators: a 200 MeV linac, a booster accelerator operating from 200 MeV to 3.0 GeV, the storage ring which stores 500 mA current of electrons at an energy of 3.0 GeV and 56 beamlines for experiments. It is planned to operate the facility primarily in a top-off mode, thereby maintaining the maximum variation in stored beam current to < 1%. Because of the very demanding requirements for beam emittance and synchrotron radiation brilliance, the beam life-time is expected to be quite low, on the order of 2 hours. Each of the 56 beamlines will be unique in terms of the source properties and configuration. The shielding designs for five representative beamlines are discussed in this paper.

We have employed element and chemically sensitive X-ray absorption spectroscopy (XAS) and X-ray magnetic circular dichroism (XMCD) in order to address a long standing controversy regarding the electronic and magnetic state of CuCr{sub 2}Se{sub 4} via halogen doping of the Se anion site in CuCr{sub 2}Se{sub 4-x}Y{sub x} (Y=Cl and Br). Long range magnetic order is observed above room temperature for all samples. The Cr L{sub 2,3} XAS spectra show a prevalent 3+ valence for the Cr ions independent of doping concentration and doping agent. The Cu L{sub 2,3} XAS spectra show a combination of 1+ and 2+ valence states for all samples. XMCD spectra indicate the presence of a magnetic moment associated with the Cu ions that is aligned antiparallel to the Cr moment.