Scientific data centers comprised of high-powered computing equipment and large capacity disk storage systems consume considerable amount of energy. Dynamic power management techniques (DPM) are commonly used for saving energy in disk systems. These involve powering down disks that exhibit long idle periods and placing them in standby mode. A file request from a disk in standby mode will incur both energy and performance penalties as it takes energy (and time) to spin up the disk before it can serve a file. For this reason, DPM has to make decisions as to when to transition the disk into standby mode such that the energy saved is greater than the energy needed to spin it up again and the performance penalty is tolerable. The length of the idle period until the DPM decides to power down a disk is called idlenessthreshold. In this paper, we study both analytically and experimentally dynamic power management techniques that save energy subject to performance constraints on file access costs. Based on observed workloads of scientific applications and disk characteristics, we provide a methodology for determining file assignment to disks and computing idleness thresholds that result in significant improvements to the energy saved by existing DPMsolutions …

An environmentally important bacterium with versatile respiration, Shewanella oneidensis MR-1, displayed significantly different growth rates under three culture conditions: minimal medium (doubling time {approx} 3 hrs), salt stressed minimal medium (doubling time {approx} 6 hrs), and minimal medium with amino acid supplementation (doubling time {approx}1.5 hrs). {sup 13}C-based metabolic flux analysis indicated that fluxes of central metabolic reactions remained relatively constant under the three growth conditions, which is in stark contrast to the reported significant changes in the transcript and metabolite profiles under various growth conditions. Furthermore, ten transposon mutants of S. oneidensis MR-1 were randomly chosen from a transposon library and their flux distributions through central metabolic pathways were revealed to be identical, even though such mutational processes altered the secondary metabolism, for example, glycine and C1 (5,10-Me-THF) metabolism.

We have performed a search for CP violation in a sample of semileptonic B{sub s}{sup 0} decays corresponding to approximately 5 fb{sup -1} of data collected by the D0 detector in Run II at the Fermilab Tevatron Collider. A time-dependent fit to the distributions of the B{sub s}{sup 0} candidates yields the flavor-specific asymmetry a{sub fs}{sup s} = [-1.7 {+-} 9.1(stat){sub -2.3}{sup +1.2}(syst)] x 10{sup -3}. This is the most precise measurement to date of this CP violation parameter.

The timing and progression of DNA methylation changes during carcinogenesis are not completely understood. To develop a timeline of aberrant DNA methylation events during malignant transformation, we analyzed genome-wide DNA methylation patterns in an isogenic human mammary epithelial cell (HMEC) culture model of transformation. To acquire immortality and malignancy, the cultured finite lifespan HMEC must overcome two distinct proliferation barriers. The first barrier, stasis, is mediated by the retinoblastoma protein and can be overcome by loss of p16(INK4A) expression. HMEC that escape stasis and continue to proliferate become genomically unstable before encountering a second more stringent proliferation barrier, telomere dysfunction due to telomere attrition. Rare cells that acquire telomerase expression may escape this barrier, become immortal, and develop further malignant properties. Our analysis of HMEC transitioning from finite lifespan to malignantly transformed showed that aberrant DNA methylation changes occur in a stepwise fashion early in the transformation process. The first aberrant DNA methylation step coincides with overcoming stasis, and results in few to hundreds of changes, depending on how stasis was overcome. A second step coincides with immortalization and results in hundreds of additional DNA methylation changes regardless of the immortalization pathway. A majority of these DNA methylation changes are …

At PAC05[1] and PAC07[2], we presented the package WARP-POSINST for the modeling of the effect of electron clouds on high-energy beams. We present here the latest developments in the package. Three new modes of operations were implemented: (1) a build-up mode where, similarly to POSINST (LBNL) or ECLOUD (CERN), the build-up of electron clouds driven by a legislated bunch train is modeled in one region of an accelerator; (2) a quasistatic mode where, similarly to HEADTAIL (CERN) or QuickPIC (USC/UCLA), the frozen beam approximation is used to split the modeling of the beam and the electrons into two components evolving on their respective time scales; and (3) a Lorentz boosted mode where the simulation is performed in a moving frame where the space and time scales related to the beam and electron dynamics fall in the same range. The implementation of modes (1) and (2) was primary motivated by the need for benchmarking with other codes, while the implementation of mode (3) fulfills the drive toward fully self-consistent simulations of e-cloud effects on the beam including the build-up phase.

Literature survey has been performed for a compendium of mechanical properties of carbon and low alloy steels following hydrogen exposure. The property sets include yield strength, ultimate tensile strength, uniform elongation, reduction of area, threshold stress intensity factor, fracture toughness, and fatigue crack growth. These properties are drawn from literature sources under a variety of test methods and conditions. However, the collection of literature data is by no means complete, but the diversity of data and dependency of results in test method is sufficient to warrant a design and implementation of a thorough test program. The program would be needed to enable a defensible demonstration of structural integrity of a pressurized hydrogen system. It is essential that the environmental variables be well-defined (e.g., the applicable hydrogen gas pressure range and the test strain rate) and the specimen preparation be realistically consistent (such as the techniques to charge hydrogen and to maintain the hydrogen concentration in the specimens).

Linking functional traits to bacterial phylogeny remains a fundamental but elusive goal of microbial ecology 1. Without this information, it becomes impossible to resolve meaningful units of diversity and the mechanisms by which bacteria interact with each other and adapt to environmental change. Ecological adaptations among bacterial populations have been linked to genomic islands, strain-specific regions of DNA that house functionally adaptive traits 2. In the case of environmental bacteria, these traits are largely inferred from bioinformatic or gene expression analyses 2, thus leaving few examples in which the functions of island genes have been experimentally characterized. Here we report the complete genome sequences of Salinispora tropica and S. arenicola, the first cultured, obligate marine Actinobacteria 3. These two species inhabit benthic marine environments and dedicate 8-10percent of their genomes to the biosynthesis of secondary metabolites. Despite a close phylogenetic relationship, 25 of 37 secondary metabolic pathways are species-specific and located within 21 genomic islands, thus providing new evidence linking secondary metabolism to ecological adaptation. Species-specific differences are also observed in CRISPR sequences, suggesting that variations in phage immunity provide fitness advantages that contribute to the cosmopolitan distribution of S. arenicola 4. The two Salinispora genomes have evolved by complex …

The Center for Advanced Energy Studies (CAES) Nuclear Energy University Program Office assists the U.S. Department of Energy Office of Nuclear Energy (DOE-NE) by administering its University Program. To promote accountable relationships between universities and the TIOs/TDOs, a process was designed and administered which includes two competitive Requests for Proposals (RFP’s) and two FOAs in the following areas: (1)Research and Development Grants, (2)Infrastructure improvement, and (3)Scholarships and Fellowships. NEUP will also host periodic reviews of university mission-specific R&D that document progress, reinforce accountability, and assess return on investment; sponsor workshops that inform universities of the Department’s research needs to facilitate continued alignment of university R&D with NE missions; and conduct communications activities that foster stakeholder trust, serve as a catalyst for accomplishing NEUP objectives, and provide national visibility of NEUP activities and accomplishments. Year to date efforts to achieve these goals will be discussed.

We suggest that wind bias against unglazed solar water heaters be mitigated by using a calibrated collector model to derive a wind correction to the measured efficiency curve.

We measure changes in the penetration depth {lambda} of the T{sub c} {approx} 6 K superconductor LaFePO. In the process scanning SQUID susceptometry is demonstrated as a technique for accurately measuring local temperature-dependent changes in {lambda}, making it ideal for studying early or difficult-to-grow materials. {lambda} of LaFePO is found to vary linearly with temperature from 0.36 to {approx} 2 K, with a slope of 143 {+-} 15 {angstrom}/K, suggesting line nodes in the superconducting order parameter. The linear dependence up to {approx} T{sub c}/3 is similar to the cuprate superconductors, indicating well-developed nodes.

Membrane-bound macromolecules are responsible for structural support and mediation of cell-cell adhesion in tissues. Quantitative analysis of these macromolecules provides morphological indices for damage or loss of tissue, for example as a result of exogenous stimuli. From an optical point of view, a membrane signal may have nonuniform intensity around the cell boundary, be punctate or diffused, and may even be perceptual at certain locations along the boundary. In this paper, a method for the detection and grouping of punctate, diffuse curvilinear signals is proposed. Our work builds upon the tensor voting and the iterative voting frameworks to propose an efficient method to detect and refine perceptually interesting curvilinear structures in images. The novelty of our method lies on the idea of iteratively tuning the tensor voting fields, which allows the concentration of the votes only over areas of interest. We validate the utility of our system with synthetic and annotated real data. The effectiveness of the tunable tensor voting is demonstrated on complex phenotypic signals that are representative of membrane-bound macromolecular structures.

This paper investigates the plausible design of transmutation target assemblies for minor actinides (MA) in Sodium Fast Reactors (SFR). A heterogeneous recycling strategy is investigated, whereby after each reactor pass, un-burned MAs from the targets are blended with MAs produced by the driver fuel and additional MAs from Spent Nuclear Fuel (SNF). A design iteration methodology was adopted for customizing the core design, target assembly design and matrix composition design. The overall design was constrained against allowable peak or maximum in-core performances. While respecting these criteria, the overall design was adjusted to reduce the total number of assemblies fabricated per refueling cycle. It was found that an inert metal-hydride MA-Zr-Hx target matrix gave the highest transmutation efficiency, thus allowing for the least number of targets to be fabricated per reactor cycle.

There is considerable interest in the use of muon beams to create either an intense source of decay neutrinos aimed at a detector located 3000-7500 km away (a Neutrino Factory), or a Muon Collider that produces high-luminosity collisions at the energy frontier. R&D aimed at producing these facilities has been under way for more than 10 years. This paper will review experimental results from MuCool, MERIT, and MICE and indicate the extent to which they will provide proof-of-principle demonstrations of the key technologies required for a Neutrino Factory or Muon Collider. Progress in constructing components for the MICE experiment will also be described.

One of the advantages of the Nevada Test Site (NTS) is that most of the geologic and hydrologic features such as hydrogeologic units (HGUs), hydrostratigraphic units (HSUs), and faults, which are important aspects of flow and transport modeling, are exposed at the surface somewhere in the vicinity of the NTS and thus are available for direct observation. However, due to access restrictions and the remote locations of many of the features, most Underground Test Area (UGTA) participants cannot observe these features directly in the field. Fortunately, National Security Technologies, LLC, geologists and their predecessors have photographed many of these features through the years. During fiscal year 2009, work was done to develop an online photograph database for use by the UGTA community. Photographs were organized, compiled, and imported into Adobe® Photoshop® Elements 7. The photographs were then assigned keyword tags such as alteration type, HGU, HSU, location, rock feature, rock type, and stratigraphic unit. Some fully tagged photographs were then selected and uploaded to the UGTA website. This online photograph database provides easy access for all UGTA participants and can help “ground truth” their analytical and modeling tasks. It also provides new participants a resource to more quickly learn the …

The hydrodynamic behavior of carbon dioxide (CO{sub 2}) injected into a deep saline formation is investigated, focusing on trapping mechanisms that lead to CO{sub 2} plume stabilization. A numerical model of the subsurface at a proposed power plant with CO{sub 2} capture is developed to simulate a planned pilot test, in which 1,000,000 metric tons of CO{sub 2} is injected over a four-year period, and the subsequent evolution of the CO{sub 2} plume for hundreds of years. Key measures are plume migration distance and the time evolution of the partitioning of CO{sub 2} between dissolved, immobile free-phase, and mobile free-phase forms. Model results indicate that the injected CO{sub 2} plume is effectively immobilized at 25 years. At that time, 38% of the CO{sub 2} is in dissolved form, 59% is immobile free phase, and 3% is mobile free phase. The plume footprint is roughly elliptical, and extends much farther up-dip of the injection well than down-dip. The pressure increase extends far beyond the plume footprint, but the pressure response decreases rapidly with distance from the injection well, and decays rapidly in time once injection ceases. Sensitivity studies that were carried out to investigate the effect of poorly constrained model parameters …

Years of performing dynamic simulations of advanced nuclear fuel cycle options provide insights into how they could work and how one might transition from the current once-through fuel cycle. This paper summarizes those insights from the context of the 2005 objectives and goals of the Advanced Fuel Cycle Initiative (AFCI). Our intent is not to compare options, assess options versus those objectives and goals, nor recommend changes to those objectives and goals. Rather, we organize what we have learned from dynamic simulations in the context of the AFCI objectives for waste management, proliferation resistance, uranium utilization, and economics. Thus, we do not merely describe “lessons learned” from dynamic simulations but attempt to answer the “so what” question by using this context. The analyses have been performed using the Verifiable Fuel Cycle Simulation of Nuclear Fuel Cycle Dynamics (VISION). We observe that the 2005 objectives and goals do not address many of the inherently dynamic discriminators among advanced fuel cycle options and transitions thereof.

Drum type packages are routinely used to transport radioactive material (RAM) in the U.S. Department of Energy (DOE) complex. These packages are designed to meet the federal regulations described in 10 CFR 71.[1] In recent years, there has been a greater need to use these packagings to store the excess fissile material, especially plutonium for long term storage. While the design requirements for safe transportation of these packagings are well defined, the requirements for safe long term storage are not well established. Since the RAM contents in the packagings produce decay heat, it is important that they are stored carefully to prevent overheating of the containment vessel (CV) seals to prevent any leakage and the impact limiter to maintain the package structural integrity. This paper analyzes different storage arrays for a typical 9977 packaging for thermal considerations and makes recommendations for their safe storage under normal operating conditions.

We report time-resolved studies of hydrogen bonding in liquid H2O, in response to direct excitation of the O-H stretch mode at 3 mu m, probed via soft x-ray absorption spectroscopy at the oxygen K-edge. This approach employs a newly developed nanofluidic cell for transient soft x-ray spectroscopy in liquid phase. Distinct changes in the near-edge spectral region (XANES) are observed, and are indicative of a transient temperature rise of 10K following transient laser excitation and rapid thermalization of vibrational energy. The rapid heating occurs at constant volume and the associated increase in internal pressure, estimated to be 8MPa, is manifest by distinct spectral changes that differ from those induced by temperature alone. We conclude that the near-edge spectral shape of the oxygen K-edge is a sensitive probe of internal pressure, opening new possibilities for testing the validity of water models and providing new insight into the nature of hydrogen bonding in water.

None

Remarks at the roundtable on plans for the future at the XIII International Workshop on Neutrino Telescopes.

We report a set of measurements of particle production in inelastic p{bar p} collisions collected with a minimum-bias trigger at the Tevatron Collider with the CDF II experiment. The inclusive charged particle transverse momentum differential cross section is measured, with improved precision, over a range about ten times wider than in previous measurements. The former modeling of the spectrum appears to be incompatible with the high particle momenta observed. The dependence of the charged particle transverse momentum on the event particle multiplicity is analyzed to study the various components of hadron interactions. This is one of the observable variables most poorly reproduced by the available Monte Carlo generators. A first measurement of the event transverse energy sum differential cross section is also reported. A comparison with a PYTHIA prediction at the hadron level is performed. The inclusive charged particle differential production cross section is fairly well reproduced only in the transverse momentum range available from previous measurements. At higher momentum the agreement is poor. The transverse energy sum is poorly reproduced over the whole spectrum. The dependence of the charged particle transverse momentum on the particle multiplicity needs the introduction of more sophisticated particle production mechanisms, such as multiple parton …

Microwave instability in the Low Energy Ring of KEKB was studied using a broadband impedance model. The model gave excellent descriptions of longitudinal dynamics for both positive and negative momentum compactions. Moreover, it predicted that the threshold of microwave instability was a factor of two lower than the machine nominal operating bunch current. The prediction was confirmed by a measurement using the Belle detector. Furthermore, we integrated the longitudinal wakefield into the beam-beam simulation and applied it to study the combined effects in KEKB. As a result, the beam-beam simulation became truly three-dimensional with emittance growth in all three dimensions simultaneously as the beam currents increase. In addition, an observed mystery of asymmetry in the horizontal scan could also be explained by our simulations.

Since 2005, the Recycler has become the sole storage ring for antiprotons used in the Tevatron Collider. The operational role of the Antiproton Source has shifted to exclusively producing antiprotons for periodic transfers to the Recycler. The process of transferring the antiprotons from the Accumulator to the Recycler has been greatly improved, leading to a dramatic reduction in the transfer time. The reduction in time has been accomplished with both an improvement in transfer efficiency and an increase in average stacking rate. This paper will describe the improvements that have streamlined the transfer process and other changes that contributed to a significant increase in the number of antiprotons available to the Collider.

The time-dependent Schr\"odinger equation for H2+ in a time-varying electromagnetic field is solved in the fixed-nuclei approximation using a previously developed finite-element/ discrete variable representation in prolate spheroidal coordinates. Amplitudes for single- and two-photon ionization are obtained using the method of exterior complex scaling to effectively propagate the field-free solutions from the end of the radiation pulse to infinite times. Cross sections are presented for one-and two-photon ionization for both parallel and perpendicular polarization of the photon field, as well as photoelectron angular distributions for two-photon ionization.