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[After a Fashion, November 17, 2005] (open access)

[After a Fashion, November 17, 2005]

Article about an event held to celebrate 30 years of Zachary Scott Theatre's children's educational program, Project Interact.
Date: November 17, 2005
Creator: Moser, Stephen MacMillan
System: The UNT Digital Library
Effect of Shock Compression Method on the Defect Substructure in Monocrystalline Copper (open access)

Effect of Shock Compression Method on the Defect Substructure in Monocrystalline Copper

Monocrystalline copper samples with orientations of [001] and [221] were shocked at pressures ranging from 20 GPa to 60 GPa using two techniques: direct drive lasers and explosively driven flyer plates. The pulse duration for these techniques differed substantially: 2 ns for the laser experiments and 1.1-1.4 {micro}s for the flyer-plate experiments. The residual microstructures were dependent on orientation, pressure, and shocking method. The much shorter pulse duration in laser shock yielded recovery microstructures with no or limited dislocation motion. For the flyer-plate experiments, the longer pulse duration allow shock-generated defects to reorganize into lower energy configurations. Calculations show that the post shock cooling occurs in a time scale of 0.2 s for laser shock and 1000 s for plate-impact shock, propitiating recovery and recrystallization conditions for the latter. At the higher pressure level extensive recrystallization was observed in the plate-impact samples, while it was absent in laser shock. An effect that is proposed to contribute significantly to the formation of recrystallized regions is the existence of micro-shearbands, which increase the local temperature.
Date: February 17, 2005
Creator: Cao, B. Y.; Meyers, M. A.; Lassila, D. H.; Schneider, M. S.; Kad, B. K.; Huang, C. X. et al.
System: The UNT Digital Library
Estimating large-scale fracture permeability of unsaturatedrockusing barometric pressure data (open access)

Estimating large-scale fracture permeability of unsaturatedrockusing barometric pressure data

We present a three-dimensional modeling study of gas flow inthe unsaturated fractured rock of Yucca Mountain. Our objective is toestimate large-scale fracture permeability, using the changes insubsurface pneumatic pressure in response to barometric pressure changesat the land surface. We incorporate the field-measured pneumatic datainto a multiphase flow model for describing the coupled processes ofliquid and gas flow under ambient geothermal conditions. Comparison offield-measured pneumatic data with model-predicted gas pressures is foundto be a powerful technique for estimating the fracture permeability ofthe unsaturated fractured rock, which is otherwise extremely difficult todetermine on the large scales of interest. In addition, this studydemonstrates that the multi-dimensional-flow effect on estimatedpermeability values is significant and should be included whendetermining fracture permeability in heterogeneous fracturedmedia.
Date: May 17, 2005
Creator: Wu, Yu-Shu; Zhang, Keni & Liu, Hui-Hai
System: The UNT Digital Library
Analysis of bacterial spore permeability to water and ions using Nano-Secondary Ion Mass Spectrometry (NanoSIMS) (open access)

Analysis of bacterial spore permeability to water and ions using Nano-Secondary Ion Mass Spectrometry (NanoSIMS)

Regulation of bacterial spore solvent and solute permeability is a fundamental feature of dormancy but is poorly understood. Here we present a new technique, nano-scale secondary ion mass spectrometry (NanoSIMS) that allows the direct visualization and quantification of chemical gradients within spores. Using NanoSIMS, we demonstrate the penetration of water and a simple ionic salt, LiF, into the core of Bacillus thuringiensis israelensis (Bti) spores. The results demonstrate chemical gradients spanning the outer coat to the inner spore core that are driven by concentration-dependent ionic fluxes. Using deuterated water (D{sub 2}O), we have shown that external water is either retained or exchanged with water contained within the spore. Hydration and exchange are rapid, on a timescale of < 1 minute. Our results suggest a permeation mechanism by which short-time scale diffusion into and out of the spore can occur along hydration pathways. Additional studies are in progress to define the flux rates and mechanisms controlling these processes.
Date: November 17, 2005
Creator: Ghosal, S.; Fallon, S.; Leighton, T.; Wheeler, K.; Hutcheon, I. & Weber, P. K.
System: The UNT Digital Library
New insights into potential functions for the protein 4.1superfamily of proteins in kidney epithelium (open access)

New insights into potential functions for the protein 4.1superfamily of proteins in kidney epithelium

Members of the protein 4.1 family of adapter proteins are expressed in a broad panel of tissues including various epithelia where they likely play an important role in maintenance of cell architecture and polarity and in control of cell proliferation. We have recently characterized the structure and distribution of three members of the protein 4.1 family, 4.1B, 4.1R and 4.1N, in mouse kidney. We describe here binding partners for renal 4.1 proteins, identified through the screening of a rat kidney yeast two-hybrid system cDNA library. The identification of putative protein 4.1-based complexes enables us to envision potential functions for 4.1 proteins in kidney: organization of signaling complexes, response to osmotic stress, protein trafficking, and control of cell proliferation. We discuss the relevance of these protein 4.1-based interactions in kidney physio-pathology in the context of their previously identified functions in other cells and tissues. Specifically, we will focus on renal 4.1 protein interactions with beta amyloid precursor protein (beta-APP), 14-3-3 proteins, and the cell swelling-activated chloride channel pICln. We also discuss the functional relevance of another member of the protein 4.1 superfamily, ezrin, in kidney physiopathology.
Date: June 17, 2005
Creator: Calinisan, Venice; Gravem, Dana; Chen, Ray Ping-Hsu; Brittin,Sachi; Mohandas, Narla; Lecomte, Marie-Christine et al.
System: The UNT Digital Library
MODELING URANIUM TRANSPORT IN UNSATURATED ZONE AT PENA BLANCA, MEXICO (open access)

MODELING URANIUM TRANSPORT IN UNSATURATED ZONE AT PENA BLANCA, MEXICO

None
Date: October 17, 2005
Creator: Ku, T.
System: The UNT Digital Library
Hydrogenic and Screened Self-Energies for d-States (open access)

Hydrogenic and Screened Self-Energies for d-States

The one-loop self-energy is evaluated for d{sub 3/2} and d{sub 5/2} states in hydrogenic ions, and good agreement found with previous calculations. Results are compared to what is known of the Z{alpha} expansion and higher-order binding corrections inferred for these states as well as for their fine structures. Screened Kohn-Sham potentials are then used to evaluate the one-loop self-energy corrections to n = 2 states of lithiumlike ions for Z = 10 - 100, n = 3 states of sodiumlike ions for Z = 20 - 100, and n = 4 states of copperlike ions for Z = 40 - 100. The importance of these screened calculations for the interpretation of recent high accuracy experiments is emphasized.
Date: October 17, 2005
Creator: Sapirstein, J & Cheng, K T
System: The UNT Digital Library
Effects of Ion-Ion Collisions and Inhomogeneity in Two-Dimensional Kinetic Ion Simulations of Stimulated Brillouin Backscattering (open access)

Effects of Ion-Ion Collisions and Inhomogeneity in Two-Dimensional Kinetic Ion Simulations of Stimulated Brillouin Backscattering

Two-dimensional simulations with the BZOHAR [B.I. Cohen, B.F. Lasinski, A.B. Langdon, and E.A. Williams, Phys. Plasmas 4, 956 (1997)] hybrid code (kinetic particle ions and Boltzmann fluid electrons) have been used to investigate the saturation of stimulated Brillouin backscatter (SBBS) instability including the effects of ion-ion collisions and inhomogeneity. Ion-ion collisions tend to increase ion-wave dissipation, which decreases the gain exponent for stimulated Brillouin backscattering; and the peak Brillouin backscatter reflectivities tend to decrease with increasing collisionality in the simulations. Two types of Langevin-operator, ion-ion collision models were implemented in the simulations. In both models used the collisions are functions of the local ion temperature and density, but the collisions have no velocity dependence in the first model. In the second model, the collisions are also functions of the energy of the ion that is being scattered so as to represent a Fokker-Planck collision operator. Collisions decorrelate the ions from the acoustic waves in SBS, which disrupts ion trapping in the acoustic wave. Nevertheless, ion trapping leading to a hot ion tail and two-dimensional physics that allows the SBS ion waves to nonlinearly scatter remain robust saturation mechanisms for SBBS in a high-gain limit over a range of ion collisionality. …
Date: October 17, 2005
Creator: Cohen, B. I.; Divol, L.; Langdon, A. B. & Williams, E. A.
System: The UNT Digital Library
Detection and Tracking of the Back-Reflection of KDP Images in the Presence or Absence of a Phase Mask (open access)

Detection and Tracking of the Back-Reflection of KDP Images in the Presence or Absence of a Phase Mask

None
Date: October 17, 2005
Creator: Awwal, A. S.; McClay, W. A.; Ferguson, W. S.; Candy, J. V.; Salmon, J. T. & Wegner, P. J.
System: The UNT Digital Library
The dissociation of liquid silica at high pressure and temperature (open access)

The dissociation of liquid silica at high pressure and temperature

Liquid silica at high pressure and temperature is shown to undergo significant structural modifications and profound changes in its electronic properties. Temperature measurements on shock waves in silica at 70-1000 GPa indicate that the specific heat of liquid SiO{sub 2} rises well above the Dulong-Petit limit, exhibiting a broad peak with temperature that is attributable to the growing structural disorder caused by bond-breaking in the melt. The simultaneous sharp rise in optical reflectivity of liquid SiO{sub 2} indicates that dissociation causes the electrical and therefore thermal conductivities of silica to attain metallic-like values of 1-5 x 10{sup 5} S/m and 24-600 W/m.K respectively.
Date: November 17, 2005
Creator: Hicks, D.; Boehly, T.; Eggert, J.; Miller, J.; Celliers, P. & Collins, G.
System: The UNT Digital Library
INSIGHTS INTO THE DYNAMIC RESPONSE OF TUNNELS IN JOINTED ROCKS (open access)

INSIGHTS INTO THE DYNAMIC RESPONSE OF TUNNELS IN JOINTED ROCKS

Tunnels in jointed rocks can be subjected to severe dynamic loads because of rock bursts, coal bumps, and large earthquakes. A series of 3-dimensional simulations was performed, based on discrete element analysis to gain insights into the parameters that influence the response of such tunnels. The simulations looked at the effect of joint set orientation, the effect of joint spacing, the effect of peak displacement for a given peak velocity, the effect of pulse peak velocity for a given displacement, the influence of using rigid versus deformable blocks in the analyses, and the effect of repeated loading. The results of this modeling were also compared to field evidence of dynamic tunnel failures. This comparison reinforced the notion that 3-dimensional discrete element analysis can capture very well the kinematics of structures in jointed rocks under dynamic loading. The paper concludes with a glimpse into the future. Results are shown for a 3-dimensional discrete element massively parallel simulation with 100 million contact elements, performed with the LLNL LDEC code.
Date: February 17, 2005
Creator: Heuze, F E & Morris, J P
System: The UNT Digital Library
A Novel 14C-Postlabeling Assay Using Accelerator Mass Spectrometry For the Detection of O6-Methyldeoxyguanosine Adducts (open access)

A Novel 14C-Postlabeling Assay Using Accelerator Mass Spectrometry For the Detection of O6-Methyldeoxyguanosine Adducts

Accelerator mass spectrometry (AMS) is currently one of the most sensitive methods available for the trace detection of DNA adducts and is particularly valuable for measuring adducts in humans or animal models. However, the standard approach requires administration of a radiolabeled compound. As an alternative, we have developed a preliminary {sup 14}C-postlabeling assay for detection of the highly mutagenic O{sup 6}-MedG, by AMS. Procedures were developed for derivatizing O{sup 6}-MedG using unlabeled acetic anhydride. Using conventional LC-MS analysis, the limit of detection for the major product, triacetylated O{sup 6}-MedG, was 10 fmoles. On reaction with {sup 14}C-acetic anhydride, using a specially designed enclosed system, the predominant product was {sup 14}C-di-acetyl O{sup 6}-MedG. This change in reaction profile was due to a modification of the reaction procedure, introduced as a necessary safety precaution. The limit of detection for {sup 14}C-diacetyl O{sup 6}-MedG by AMS was determined as 79 attomoles, {approx}18,000 fold lower than that achievable by LSC. Although the assay has so far only been carried out with labeled standards, the degree of sensitivity obtained illustrates the potential of this assay for measuring O{sup 6}-MedG levels in humans.
Date: November 17, 2005
Creator: Thompkins, E. M.; Farmer, P. B.; Lamb, J. H.; Jukes, R.; Dingley, K.; Ubick, E. A. et al.
System: The UNT Digital Library
New Tools for the site-specific attachment of proteins to surface (open access)

New Tools for the site-specific attachment of proteins to surface

Protein microarrays in which proteins are immobilized to a solid surface are ideal reagents for high-throughput experiments that require very small amounts of analyte. Such protein microarrays ('protein chips') can be used very efficiently to analyze all kind of protein interactions en masse. Although a variety of methods are available for attaching proteins on solid surfaces. Most of them rely on non-specific adsorption methods or on the reaction of chemical groups within proteins (mainly, amino and carboxylic acid groups) with complementary reactive groups. In both cases the protein is attached to the surface in random orientations. The use of recombinant affinity tags addresses the orientation issue, however in most of the cases the interaction of the tags are reversible (e.g., glutathione S-transferase, maltose binding protein and poly-His) and, hence, are not stable over the course of subsequent assays or require large mediator proteins (e.g., biotin-avidin and antigen antibody). The key for the covalent attachment of a protein to a solid support with a total control over the orientation is to introduce two unique and mutually reactive groups on both the protein and the surface. The reaction between these two groups should be highly selective thus behaving like a molecular 'Velcro'.
Date: June 17, 2005
Creator: Camarero, J A; Kwon, Y & Coleman, M A
System: The UNT Digital Library
Phenotype Array Analysis of Metabolic Differences in Yersinia pestis (open access)

Phenotype Array Analysis of Metabolic Differences in Yersinia pestis

None
Date: May 17, 2005
Creator: Holtz, A. & McCutchen-Maloney, S.
System: The UNT Digital Library
Multi-transmitter multi-receiver null coupled systems forinductive detection and characterization of metallic objects (open access)

Multi-transmitter multi-receiver null coupled systems forinductive detection and characterization of metallic objects

Equivalent dipole polarizabilities are a succinct way tosummarize the inductive response of an isolated conductive body atdistances greater than the scale of the body. Their estimation requiresmeasurement of secondary magnetic fields due to currents induced in thebody by time varying magnetic fields in at least three linearlyindependent (e.g., orthogonal) directions. Secondary fields due to anobject are typically orders of magnitude smaller than the primaryinducing fields near the primary field sources (transmitters). Receivercoils may be oriented orthogonal to primary fields from one or twotransmitters, nulling their response to those fields, but simultaneouslynulling to fields of additional transmitters is problematic. Iftransmitter coils are constructed symmetrically with respect to inversionin a point, their magnetic fields are symmetric with respect to thatpoint. If receiver coils are operated in pairs symmetric with respect toinversion in the same point, then their differenced output is insensitiveto the primary fields of any symmetrically constructed transmitters,allowing nulling to three (or more) transmitters. With a sufficientnumber of receivers pairs, object equivalent dipole polarizabilities canbe estimated in situ from measurements at a single instrument sitting,eliminating effects of inaccurate instrument location on polarizabilityestimates. The method is illustrated with data from a multi-transmittermulti-receiver system with primary field nulling through differencedreceiver pairs, interpreted in …
Date: October 17, 2005
Creator: Smith, J. Torquil; Morrison, H. Frank; Doolittle, Lawrence R. & Tseng, Hung-Wen
System: The UNT Digital Library
Cross-check of different techniques for two-dimensional powerspectral density measurements of X-ray optics (open access)

Cross-check of different techniques for two-dimensional powerspectral density measurements of X-ray optics

The consistency of different instruments and methods for measuring two-dimensional (2D) power spectral density (PSD) distributions are investigated. The instruments are an interferometric microscope, an atomic force microscope (AFM) and the X-ray Reflectivity and Scattering experimental facility, all available at Lawrence Berkeley National Laboratory. The measurements were performed with a gold-coated mirror with a highly polished stainless steel substrate. It was shown that these three techniques provide essentially consistent results. For the stainless steel mirror, an envelope over all measured PSD distributions can be described with an inverse power-law PSD function. It is also shown that the measurements can be corrected for the specific spatial frequency dependent systematic errors of the instruments. The AFM and the X-ray scattering measurements were used to determine the modulation transfer function of the interferometric microscope. The corresponding correction procedure is discussed in detail. Lower frequency investigation of the 2D PSD distribution was also performed with a long trace profiler and a ZYGO GPI interferometer. These measurements are in some contradiction, suggesting that the reliability of the measurements has to be confirmed with additional investigation. Based on the crosscheck of the performance of all used methods, we discuss the ways for improving the 2D PSD …
Date: April 17, 2005
Creator: Yashchuk, Valeriy V.; Irick, Steve C.; Gullikson, Eric M.; Howells, Malcolm R.; MacDowell, Alastair A.; McKinney, Wayne R. et al.
System: The UNT Digital Library
Investigation of Microwave Instability on Electron Storage Ring TLS (open access)

Investigation of Microwave Instability on Electron Storage Ring TLS

With the planned installation of a superconducting rf system, the new operation mode of TLS, the electron storage ring at NSRRC, is expected to double the beam intensity. Several accelerator physics topics need to be examined. Beam instability of single-bunch longitudinal microwave instability is one of these topics. We consider two approaches to measure the effective broad band impedance. We compare these measurement results with each other and to old data [Ref.1]. We calculate the threshold current of microwave instability with a mode-mixing analysis code written by Dr. K. Oide of KEK [Ref.2]. We also develop a multi-particle tracking code to simulate the instability. The results of simulation and measurement are compared and discussed. We conclude that doubling of beam current from 200 mA (1.5 mA/bunch) to 400 mA (3 mA/bunch) will not trigger the microwave instability even without a Landau cavity to lengthen the bunch. The benefit of Landau cavity is mainly for beam life time.
Date: May 17, 2005
Creator: Wang, M.-H. & Chao, A.
System: The UNT Digital Library
Fast Neutron Damage Studies on NdFeB Materials (open access)

Fast Neutron Damage Studies on NdFeB Materials

Many materials and electronics need to be tested for the radiation environment expected at linear colliders (LC) since both accelerator and detectors will be subjected to large fluences of hadrons, leptons and {gamma}'s over the life of the facility [1]. While the linacs will be superconducting, there are still many uses for NdFeB in the damping rings, injection and extraction lines and final focus. Our understanding of the situation for rare earth, permanent magnet materials was presented at PAC03 [2]. Our first measurements of fast neutron, stepped doses at the UC Davis McClellan Nuclear Reactor Center (UCD MNRC) were presented at EPAC04 [3]. We have extended the doses, included other manufacturer's samples, and measured induced radioactivities which are discussed in detail.
Date: May 17, 2005
Creator: Anderson, S.; Spencer, J.; Wolf, Z.; /SLAC; Baldwin, A.; Pellett, D. et al.
System: The UNT Digital Library
Phase stability in heavy f-electron metals from first-principles theory (open access)

Phase stability in heavy f-electron metals from first-principles theory

The structural phase stability of heavy f-electron metals is studied by means of density-functional theory (DFT). These include temperature-induced transitions in plutonium metal as well as pressure-induced transitions in the trans-plutonium metals Am, Cm, Bk, and Cf. The early actinides (Th-Np) display phases that could be rather well understood from the competition of a crystal-symmetry breaking mechanism (Peierls distortion) of the 5f states and electrostatic forces, while for the trans-plutonium metals (Am-Cf) the ground-state structures are governed by 6d bonding. We show in this paper that new physics is needed to understand the phases of the actinides in the volume range of about 15-30 {angstrom}{sup 3}. At these volumes one would expect, from theoretical arguments made in the past, to encounter highly complex crystal phases due to a Peierls distortion. Here we argue that the symmetry reduction associated with spin polarization can make higher symmetry phases competitive. Taking this into account, DFT is shown to describe the well-known phase diagram of plutonium and also the recently discovered complex and intriguing high-pressure phase diagrams of Am and Cm. The theory is further applied to investigate the behaviors of Bk and Cf under compression.
Date: November 17, 2005
Creator: Soderlind, P
System: The UNT Digital Library
Beam Position Monitoring using the HOM-Signals from a Damped and Detuned Accelerating Structure (open access)

Beam Position Monitoring using the HOM-Signals from a Damped and Detuned Accelerating Structure

The Next and Global Linear Collider (NLC/GLC) designs require precision alignment of the beam in the accelerator structures to reduce short range wakefields. The moderately damped and detuned structures themselves provide suitable higher order mode (HOM) signals to measure this alignment. The modes in the lowest dipole band, whose frequencies range from 14-16 GHz, provide the strongest signals. To determine the position resolution they provide, an NLC/GLC prototype structure that was installed in the ASSET facility of the SLAC Linac was instrumented to downmix and digitize these signals. The beam position within the structure was determined by simultaneously measuring the signals at three frequencies (14.3, 15, 15.7 GHz) corresponding to modes localized at the beginning, the middle and the end of the 60 cm long structure. A resolution of 1 micron was achieved even with 28 dB signal attenuation, which is better than the 5 micron resolution required for the NLC/GLC.
Date: May 17, 2005
Creator: Dobert, S; Adolphsen, C.; Jones, R.; Lewandowski, J.; Li, Z.; Pivi, M. et al.
System: The UNT Digital Library
Translational Applications of Molecular Imaging and Radionuclide Therapy (open access)

Translational Applications of Molecular Imaging and Radionuclide Therapy

Molecular imaging is becoming a larger part of imaging research and practice. The Office of Biological and Environmental Research of the Department of Energy funds a significant number of researchers in this area. The proposal is to partially fund a workshop to inform scientists working in nuclear medicine and nuclear medicine practitioners of the recent advances of molecular imaging in nuclear medicine as well as other imaging modalities. A limited number of topics related to radionuclide therapy will also be discussed. The proposal is to request partial funds for the workshop entitled “Translational Applications of Molecular Imaging and Radionuclide Therapy” to be held prior to the Society of Nuclear Medicine Annual Meeting in Toronto, Canada in June 2005. The meeting will be held on June 17-18. This will allow scientists interested in all aspects of nuclear medicine imaging to attend. The chair of the organizing group is Dr. Michael J. Welch. The organizing committee consists of Dr. Welch, Dr. William C. Eckelman and Dr. David Vera. The goal is to invite speakers to discuss the most recent advances of modern molecular imaging and therapy. Speakers will present advances made in in vivo tagging imaging assays, technical aspects of small animal …
Date: June 17, 2005
Creator: Welch, Michael J.; Eckelman, William C. & Vera, David
System: The UNT Digital Library
Measurement of the Vertical Emittance and beta-Function at the PEP-II Interaction Point Using the BaBar Detector (open access)

Measurement of the Vertical Emittance and beta-Function at the PEP-II Interaction Point Using the BaBar Detector

We present measurements of the effective vertical emittance and IP {beta}-function in the PEP-II asymmetric B Factory at SLAC. These beam parameters are extracted from fits to the longitudinal dependence of the luminosity and the vertical luminous size, measured using e{sup +}e{sup -} {yields} {mu}{sup +}{mu}{sup -} events recorded in the BABAR detector. The results are compared, for different sets of machine conditions, to accelerator-based measurements of the optical functions of the two beams.
Date: May 17, 2005
Creator: Thompson, J. M.; Roodman, A. & Kozanecki, W.
System: The UNT Digital Library
Top Quark Pair Production at the Tevatron (open access)

Top Quark Pair Production at the Tevatron

The measurement of the top quark pair production crosssection inproton-antiproton collisions at 1.96 TeV is a test ofquantumchromodynamics and could potentially be sensitive to newphysics beyondthe standard model. I report on the latest t-tbarcross section resultsfrom the CDF and DZero experiments in various finalstate topologies whicharise from decays of top quark pairs.
Date: May 17, 2005
Creator: Nielsen, Jason
System: The UNT Digital Library
PEP-II Large Power Supplies Rebuild Program at SLAC (open access)

PEP-II Large Power Supplies Rebuild Program at SLAC

Seven large power supplies (LGPS) with output ratings from 72kW to 270kW power PEP-II quad magnets in the electron-positron collider region. These supplies have posed serious maintenance and reliability problems since they were installed in 1997, resulting in loss of accelerator availability. A redesign/rebuild program was undertaken by the SLAC Power Conversion Department. During the 2004 summer shutdown all the control circuits in these supplies were redesigned and replaced. A new PWM control board, programmable logic controller, and touch panel have been installed to improve LGPS reliability, and to make troubleshooting easier. In this paper we present the details of this rebuilding program and results.
Date: May 17, 2005
Creator: Bellomo, P.; Lipari, J. J.; de Lira, A. C. & Rafael, F. S.
System: The UNT Digital Library