Adaptive optics (AO) and optical coherence tomography (OCT) are powerful imaging modalities that, when combined, can provide high-volumetric-resolution, images of the retina. The AO-OCT system at UC Davis has been under development for 2 years and has demonstrated the utility of this technology for microscopic, volumetric, in vivo retinal imaging [1]. The current system uses an AOptix bimorph deformable mirror (DM) for low-order, high-stroke correction [2] and a 140-actuator Boston Micromachines DM for high-order correction [3]. We are beginning to investigate the potential for increasing the image contrast in this system using higher-order wavefront correction. The first step in this analysis is to quantify the residual wavefront error (WFE) in the current system. Developing an error budget is a common tool for improved performance and system design in astronomical AO systems [4, 5]. The process for vision science systems is also discussed in several texts e.g. [6], but results from this type of analysis have rarely been included in journal articles on AO for vision science. Careful characterization of the AO system will lead to improved performance and inform the design of a future high-contrast system. In general, an AO system error budget must include an analysis of three categories …

Although blast mitigation is most often achieved with solid shielding, ambient gas pressure can also affect the coupling of shock waves to solid targets. In this work the role of air as an energy transfer medium was examined experimentally by subjecting identical large-area rectangular witness plates to short-range blast effects in air and vacuum ({approx}50 mtorr) at 25 C. The expanding reactant front of 3 kg C4 charges was observed by fast camera to be cylindrically symmetric in both air and vacuum. The horizontal component of the reactant cloud velocity (perpendicular to the witness plates) was constant in both cases, with values of 3.0 and 5.9 km/s for air and vacuum, respectively. As a result of the blast, witness plates were plastically deformed into a shallow dish geometry, with local maxima 30 and 20 mm deep for air and vacuum, respectively. The average plate deflection from the air blast was 11 mm, {approx}10% deeper than the average vacuum plate deflection. Shock pressure estimates were made with a simple impedance-matching model, and indicate peak values in the 30-50 MPa range are consistent with the reactant cloud density and velocity. However, more detailed analysis is necessary to definitely establish the mechanisms by …

Thomson scattering in argon gas successfully probed the region of plasma just behind the shock front. The instantaneous shock velocity can be inferred from the duration of the signal, taking into account the size and shape of the scattering volume. Possible misalignment of the probe beam and spectrometer slits greatly affects the size and shape of the scattering volume, and therefore affects the calculation of the instantaneous shock velocity.

Most physics analysis jobs involve multiple selection steps on the input data. These selection steps are called ''cuts'' or ''queries''. A common strategy to implement these queries is to read all input data from files and then process the queries in memory. In many applications the number of variables used to define these queries is a relative small portion of the overall data set therefore reading all variables into memory takes unnecessarily long time. In this paper we describe an integration effort that can significantly reduce this unnecessary reading by using an efficient compressed bitmap index technology. The primary advantage of this index is that it can process arbitrary combinations of queries very efficiently, while most other indexing technologies suffer from the ''curse of dimensionality'' as the number of queries increases. By integrating this index technology with the ROOT analysis framework, the end-users can benefit from the added efficiency without having to modify their analysis programs. Our performance results show that for multi-dimensional queries, bitmap indices outperform the traditional analysis method up to a factor of 10.

We have found a deep-mixing process which occurs during First Giant Branch (FGB) evolution. It begins at the point in evolution where the surface convection zone (SCZ), having previously grown in size, starts to shrink, and it is driven by a local minimum that develops in the mean molecular weight as a result of the burning of {sup 3}He. This mixing can solve two important observational problems. One is why the interstellar medium (ISM) has not been considerably enriched in {sup 3}He since the Big Bang. The other is why products of nucleosynthesis such as {sup 13}C are progressively enriched on the upper FGB, when classical stellar modeling says that no further enrichment should take beyond the First Dredge-Up (FDU) episode, somewhat below the middle of the FGB.

We present a novel linear scaling ab initio total energyelectronic structure calculation method, which is simple to implement,easily to parallelize, and produces essentially thesame results as thedirect ab initio method, while it could be thousands of times faster.Using this method, we have studied the dipole moments of CdSe quantumdots, and found both significant bulk and surface contributions. The bulkdipole contribution cannot simply be estimated from the bulk spontaneouspolarization value by a proportional volume factor. Instead it has ageometry dependent screening effect. The dipole moment also produces astrong internal electric field which induces a strong electron holeseparation.

Acetals are among the most commonly used protecting groups for aldehydes and ketones in organic synthesis due to their ease of installation and resistance to cleavage in neutral or basic solution.[1] The common methods for hydrolyzing acetals almost always involve the use of either Broensted acid or Lewis acid catalysts.[2] Usually aqueous acids or organic solutions acidified with organic or inorganic acids have been used for reconversion of the acetal functionality to the corresponding carbonyl group; however, recently a number of reports have documented a variety of strategies for acetal cleavage under mild conditions. These include the use of Lewis acids such as bismuth(III)[3] or cerium(IV),[4, 5] functionalized silica gel, such as silica sulfuric acid[6] or silica-supported pyridinium p-toluene sulfonate,[7] or the use of silicon-based reagents such as TESOTf-2,6-Lutidine.[8] Despite these mild reagents, all of the above conditions require either added acid or overall acidic media. Marko and co-workers recently reported the first example of acetal deprotection under mildly basic conditions using catalytic cerium ammonium nitrate at pH 8 in a water-acetonitrile solution.[5] Also recently, Rao and co-workers described a purely aqueous system at neutral pH for the deprotection of acetals using {beta}-cyclodextrin as the catalyst.[9] Herein, we report the …

A high-throughput multiplexed assay was developed for the differential laboratory diagnosis of foot-and-mouth disease virus (FMDV) from viruses which cause clinically similar diseases of livestock. This assay simultaneously screens for five RNA and two DNA viruses using multiplexed reverse transcription PCR (mRT-PCR) amplification coupled with a microsphere hybridization array and flow-cytometric detection. Two of the seventeen primer-probe sets included in this multiplex assay were adopted from previously characterized real-time RT-PCR (rRT-PCR) assays for FMDV. The diagnostic accuracy of the mRT-PCR was evaluated using 287 field samples, including 248 (true positive n= 213, true negative n=34) from suspect cases of foot-and-mouth disease collected from 65 countries between 1965 and 2006 and 39 true negative samples collected from healthy animals. The mRT-PCR assay results were compared with two singleplex rRT-PCR assays, using virus isolation with antigen-ELISA as the reference method. The diagnostic sensitivity of the mRT-PCR assay for FMDV was 93.9% [95% C.I. 89.8-96.4%], compared to 98.1% [95% C.I. 95.3-99.3%] for the two singleplex rRT-PCR assays used in combination. In addition, the assay could reliably differentiate between FMDV and other vesicular viruses such as swine vesicular disease virus and vesicular exanthema of swine virus. Interestingly, the mRT-PCR detected parapoxvirus (n=2) and bovine …

The NIF Power Conditioning System provides the pulsed excitation required to drive flashlamps in the laser's optical amplifiers. Modular in design, each of the 192 Main Energy Storage Modules (MESMs) storage up to 2.2 MJ of electrical energy in its capacitor bank before delivering the energy to 20 pairs of flashlamps in a 400 {micro}s pulse (10% power points). The peak current of each MESM discharge is 0.5 MA. Production, installation, commissioning and operation of the NIF Power Conditioning continue to progress rapidly, with the goals of completing accelerated production in late 2007 and finishing commissioning by early 2008, all the while maintaining an aggressive operations schedule. To date, more than 80% of the required modules have been assembled, shipped and installed in the facility, representing more that 240 MJ of stored energy available for driving NIF flashlamps. The MESMs have displayed outstanding reliability during daily, multiple-shift operations.

We have measured the X-ray absorption (XAS) and X-ray magnetic circular dichroism (XMCD) at the Mn L{sub 3,2} edges in ferromagnetic Ga{sub 1-x}Mn{sub x}P films for 0.018 {le} x {le} 0.042. Large XMCD asymmetries at the L{sub 3} edge indicate significant spin-polarization of the density of states at the Fermi energy. The spectral shapes of the XAS and XMCD are nearly identical with those for Ga{sub 1-x}Mn{sub x}As indicating that the hybridization of Mn d states and anion p states is similar in the two materials. Finally, compensation with sulfur donors not only lowers the ferromagnetic Curie temperature but also reduces the spin polarization of the hole states.

Measurements made in a laser heated diamond-anvil cell are reported that extend the melting curve of Xe to 80 GPa and 3350 K. The steep lowering of the melting slope (dT/dP) that occurs near 17 GPa and 2750 K results from the hybridization of the p-like valence and d-like conduction states with the formation of clusters in the liquid having Icosahedral Short-Range Order (ISRO).

Datasets used in scientific and engineering applications are often modeled as dense multi-dimensional arrays. For very large datasets, the corresponding array models are typically stored out-of-core as array files. The array elements are mapped onto linear consecutive locations that correspond to the linear ordering of the multi-dimensional indices. Two conventional mappings used are the row-major order and the column-major order of multi-dimensional arrays. Such conventional mappings of dense array files highly limit the performance of applications and the extendibility of the dataset. Firstly, an array file that is organized in say row-major order causes applications that subsequently access the data in column-major order, to have abysmal performance. Secondly, any subsequent expansion of the array file is limited to only one dimension. Expansions of such out-of-core conventional arrays along arbitrary dimensions, require storage reorganization that can be very expensive. Wepresent a solution for storing out-of-core dense extendible arrays that resolve the two limitations. The method uses a mapping function F*(), together with information maintained in axial vectors, to compute the linear address of an extendible array element when passed its k-dimensional index. We also give the inverse function, F-1*() for deriving the k-dimensional index when given the linear address. We show …

We present detailed atomic physics models for motional Stark effects (MSE) diagnostic on magnetic fusion devices. Excitation and ionization cross sections of the hydrogen or deuterium beam traveling in a magnetic field in collisions with electrons, ions, and neutral gas are calculated in the first Born approximation. The density matrices and polarization states of individual Stark-Zeeman components of the Balmer {alpha} line are obtained for both beam into plasma and beam into gas models. A detailed comparison of the model calculations and the MSE polarimetry and spectral intensity measurements obtained at the DIII-D tokamak is carried out. Although our beam into gas models provide a qualitative explanation for the larger {pi}/{sigma} intensity ratios and represent significant improvements over the statistical population models, empirical adjustment factors ranging from 1.0-2.0 must still be applied to individual line intensities to bring the calculations into full agreement with the observations. Nevertheless, we demonstrate that beam into gas measurements can be used successfully as calibration procedures for measuring the magnetic pitch angle through {pi}/{sigma} intensity ratios. The analyses of the filter-scan polarization spectra from the DIII-D MSE polarimetry system indicate unknown channel and time dependent light contaminations in the beam into gas measurements. Such contaminations …

In our recent experiments on the TMX-U thermal-barrier device, we achieved the end plugging of axial ion losses up to a central cell density of n/sub c/ = 6 x 10/sup 12/ cm/sup -3/. During lower density experiments, we measured the axial potential profile characteristic of a thermal barrier and found an ion-confining potential greater than 1.5 kV and a potential depression of 0.45 kV in the barrier region. The average beta of hot end plug electrons has reached 15% and of hot central cell ions has reached 6%. In addition, we heated deuterium ions in the central cell with ICRF to an average perpendicular energy of 2 keV. During strong end plugging at low density (7 x 10/sup 11/ cm/sup -3/), the axial ion confinement time tau/sub parallel/ reached 50 to 100 ms while the nonambipolar radial ion confinement time tau/sub perpendicular/ was 14 ms - independent of end plugging. Electrically floating end walls increased the radial ion confinement time by a factor of 1.8. At higher densities and lower potentials, tau/sub parallel/ was 6 to 12 ms and tau/sub perpendicular/ exceeded 100 ms.

In our recent experiments on the TMX-U thermal-barrier device, we achieved the end plugging of axial ion losses up to a central cell density of n/sub c/ = 6 x 10/sup 12/ cm/sup -3/. During lower density experiments, we measured the axial potential profile characteristic of a thermal barrier and found an ion-confining potential greater than 1.5 kV and a potential depression of 0.45 kV in the barrier region. The average beta of hot end plug electrons has reached 15% and of hot central cell ions has reached 6%. In addition, we heated deuterium ions in the central cell with ICRF to an average perpendicular energy of 2 keV. During strong end plugging at low density (7 x 10/sup 11/ cm/sup -3/), the axial ion confinement time tau/sub parallel to/ reached 50 to 100 ms while the nonambiopolar radial ion confinement time tau/sub perpendicular to/ was 14 ms - independent of end plugging. Electrically floating end walls doubled the radial ion confinement time. At higher densities and lower potentials, tau/sub parallel to/ was 6 to 12 ms and tau/sub perpendicular to/ exceeded 100 ms.

In this paper we discuss the experimental signatures of the new form of nuclear matter--the Color Glass Condensate (CGC) in particle production at RHIC. We show that predictions for particle production in p(d)A and AA collisions derived from these properties are in agreement with data collected at RHIC.

We report on 2D near-field imaging experiments of the 11.9-nm Sn X-ray laser that were performed with a set of novel Mo/Y multilayer mirrors having reflectivities of up to {approx}45% at normal and at 45 incidence. Second-moment analysis of the X-ray laser emission was used to determine values of the X-ray beam propagation factor M{sup 2} for a range of irradiation parameters. The results reveal a reduction of M{sup 2} with increasing prepulse amplitude. The spatial size of the output is a factor of {approx}2 smaller than previously measured for the 14.7-nm Pd X-ray laser, while the distance of the X-ray emission with respect to the target surface remains roughly the same.

A broad baseline study of the levels and distributions of trace metals and PCB compounds in sediments has been undertaken. PCB concentrations in surface sediments reflect the source of these contaminates in the region. The highest PCB concentrations as Aroclor 1260 (approximately 10 ng g{sup -1}) were found in sediments near the outflow of the Po river. The lowest concentrations (1.5 ng g{sup -1} dry) were associated with the sediments from the Jabuka Pit in the Middle Adriatic. These values are quite similar to total PCBs (<1.0-17) measured in surface sediments sampled off the coast of Croatia in 1977-78. Thus, based on the limited amount of new data available, it appears that there has been little, if any, decrease in PCB loading in Adriatic sediments over the past 15 years. Downcore profiles of PCBs in sediment cores are also discussed from a pollution history standpoint. Likewise, total mercury in surface sediments was also highest at stations off the Po (403-499 ng g{sup -1} dry) and lowest (67-224 ng g{sup -1}) in the Jabuka Pit. In one core located just south of the Po outflow, total Hg concentrations at all depths were relatively high decreasing gradually from approximately 400 ng g{sup …

This paper summarizes an analysis of the U.S.-Russian Nuclear Material Protection, Control and Accounting (MPC&A) Program, developed on the basis of extensive discussions with U.S. laboratory participants as well as personal experience. Results of the discussions have been organized into three main areas: Technical/MPC&A Progress; Programmatic and Administrative Issues; and Professional Aspects, Implications for MPC&A effectiveness, for MPC&A sustainability, and for future relations and collaboration are derived. Suggested next steps are given.

Stray electrons can arise in positive-ion accelerators for heavy ion fusion or other applications as a result of ionization of ambient gas or gas released from walls due to halo-ion impact, or as a result of secondary- electron emission. We summarize the distinguishing features of electron cloud issues in heavy-ion-fusion accelerators and a plan for developing a self-consistent simulation capability for heavy-ion beams and electron clouds. We also present results from several ingredients in this capability: (1) We calculate the electron cloud produced by electron desorption from computed beam-ion loss, which illustrates the importance of retaining ion reflection at the walls. (2) We simulate of the effect of specified electron cloud distributions on ion beam dynamics. We consider here electron distributions with axially varying density, centroid location, or radial shape, and examine both random and sinusoidally varying perturbations. We find that amplitude variations are most effective in spoiling ion beam quality, though for sinusoidal variations which match the natural ion beam centroid oscillation or breathing mode frequencies, the centroid and shape perturbations can also have significant impact. We identify an instability associated with a resonance between the beam-envelope ''breathing'' mode and the electron perturbation. We estimate its growth rate, which …

Recent work in classification indicates that significant improvements in accuracy can be obtained by growing an ensemble of classifiers and having them vote for the most popular class. This paper focuses on ensembles of decision trees that are created with a randomized procedure based on sampling. Randomization can be introduced by using random samples of the training data (as in bagging or boosting) and running a conventional tree-building algorithm, or by randomizing the induction algorithm itself. The objective of this paper is to describe the first experiences with a novel randomized tree induction method that uses a sub-sample of instances at a node to determine the split. The empirical results show that ensembles generated using this approach yield results that are competitive in accuracy and superior in computational cost to boosting and bagging.

Multilayer coated blazed gratings with high groove density are the best candidates for use in high resolution EUV and soft x-ray spectroscopy. Theoretical analysis shows that such a grating can be potentially optimized for high dispersion and spectral resolution in a desired high diffraction order without significant loss of diffraction efficiency. In order to realize this potential, the grating fabrication process should provide a perfect triangular groove profile and an extremely smooth surface of the blazed facets. Here we report on recent progress achieved at the Advanced Light Source (ALS) in fabrication of high quality multilayer coated blazed gratings. The blazed gratings were fabricated using scanning beam interference lithography followed by wet anisotropic etching of silicon. A 200 nm period grating coated with a Mo/Si multilayer composed with 30 bi-layers demonstrated an absolute efficiency of 37.6percent in the 3rd diffraction order at 13.6 nm wavelength. The groove profile of the grating was thoroughly characterized with atomic force microscopy before and after the multilayer deposition. The obtained metrology data were used for simulation of the grating efficiency with the vector electromagnetic PCGrate-6.1 code. The simulations showed that smoothing of the grating profile during the multilayer deposition is the main reason for …

Powered operation of Cryomodule 1 (CM-1) at the Fermilab SRF Beam Test Facility began in late 2010. Since then a series of tests first on the eight individual cavities and then the full cryomodule have been performed. We report on the results of these tests and lessons learned which will have an impact on future module testing at Fermilab. Since November 2010 Cryomodule 1 has been operating at 2 Kelvin. After evaluating each of the eight cavities while individually powered, the entire module has recently been powered and peak operation determined as shown in Figure 4. Several more weeks of measurements are planned before the module is warmed up, removed and replaced with Cryomodule 2 now under assembly at Fermilab.

There are two key systems that must operate efficiently, in order for a muon collider to be a viable option for high energy physics. These systems are the muon production and collection system and the muon cooling system. Both systems require the use of high field superconducting solenoid magnets. This paper describes the supcrconducting solenoid system used for the capture and phase rotation of the pions that are produced on a target in a high intensity proton beam.