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Phylogenetic Analysis of Shewanella Strains by DNA Relatedness Derived from Whole Genome Microarray DNA-DNA Hybridization and Comparison with Other Methods

Phylogenetic analyses were done for the Shewanella strains isolated from Baltic Sea (38 strains), US DOE Hanford Uranium bioremediation site [Hanford Reach of the Columbia River (HRCR), 11 strains], Pacific Ocean and Hawaiian sediments (8 strains), and strains from other resources (16 strains) with three out group strains, Rhodopseudomonas palustris, Clostridium cellulolyticum, and Thermoanaerobacter ethanolicus X514, using DNA relatedness derived from WCGA-based DNA-DNA hybridizations, sequence similarities of 16S rRNA gene and gyrB gene, and sequence similarities of 6 loci of Shewanella genome selected from a shared gene list of the Shewanella strains with whole genome sequenced based on the average nucleotide identity of them (ANI). The phylogenetic trees based on 16S rRNA and gyrB gene sequences, and DNA relatedness derived from WCGA hybridizations of the tested Shewanella strains share exactly the same sub-clusters with very few exceptions, in which the strains were basically grouped by species. However, the phylogenetic analysis based on DNA relatedness derived from WCGA hybridizations dramatically increased the differentiation resolution at species and strains level within Shewanella genus. When the tree based on DNA relatedness derived from WCGA hybridizations was compared to the tree based on the combined sequences of the selected functional genes (6 loci), we …
Date: May 17, 2010
Creator: Wu, Liyou; Yi, T. Y.; Van Nostrand, Joy & Zhou, Jizhong
System: The UNT Digital Library

The Role of the Tetraheme Cytochrome c3 in Desulfovibrio vulgaris Hildenborough Metabolism

The role of tetraheme cytochrome c3 (CycA) in the metabolism of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough (DvH) was investigated by deletion of the cycA gene using a marker-exchange deletion strategy. A highly abundant periplasmic cytochrome, CycA has the important function of transferring electrons from periplasmic hydrogenases (Hyd, Hyn, Hys) to transmembrane complexes which transport the electrons to the cytoplasm where sulfate is reduced. Previous studies have indicated that during its interaction with periplasmic hydrogenases, CycA is also involved in the reduction of toxic metals. Growth of the cycA mutant strain on lactate as the electron donor and sulfate as the terminal electron acceptor showed that, despite its abundance, CycA is not essential for DvH growth. However, the rate of growth of the mutant strain was significantly lower, and the extent of growth less, than rates and extents of growth of the wild type and complement strains on lactate/sulfate medium. This indicates that a portion of the electrons generated from cytoplasmic lactate oxidation are transported by CycA for energy production, possibly in a hydrogen cycling mechanism employed to generate ATP. Failure of the mutant strain to grow on either formate or H2, with sulfate or sulfite as electron acceptors, further …
Date: May 17, 2010
Creator: Semkiw, Elizabeth; Zane, Grant & Wall, Judy
System: The UNT Digital Library

Syntrophic Degradation of Lactate in Methanogenic Co-cultures

In environments where the amount of the inorganic electron acceptors (oxygen, nitrate, sulfate, sulfur oroxidized metal ions (Fe3+;Mn4+) is insufficient for complete breakdown of organic matter, methane is formed as the major reduced end product. In such methanogenic environments organic acids are degraded by syntrophic associations of fermenting, acetogenic bacteria (e.g., sulfate-reducing bacteria (SRB) as"secondary fermenters") and methanogenic archaea. In these consortia, the conversion of lactate to acetate, CO2 and methane depends on the cooperating activities of both metabolically distinct microbial groups that are tightly linked by the need to maintain the exchanged metabolites (hydrogenandformate) at very low concentrations.
Date: May 17, 2010
Creator: Meyer, Birte & Stahl, David
System: The UNT Digital Library

Taxa-area Relationship (TAR) of Microbial Functional Genes with Long-TGerm Fertilization

Diversity and spatial patterns in plant and animal communities are well documented as a positive-power law of a taxa-area relationship (TAR). At present little is known whether this also applies to soil microbial communities and whether long-term fertilization has an influence on the underlying microbial diversity. To test the effects of long-term fertilization on above-ground botanical diversity and below-ground microbial diversity, a nested sampling approach on Park Grass plots (12d& 11/2c) of Rothamsted Reseach in United Kingdom, both at ~;; pH 5 but with plant diversities of between 42 and 13 respectively were used. GeoChip 3.0, covering approximately 57, 000 gene sequences of 292 gene families involved in nitrogen, carbon, sulfur and phosphorus cycling, metal reduction and resistance, and organic contaminant degradation, was used to determine the gene area relationships for both functional and phylogenetic groups and the relationship to plant diversity. Our analysis indicated that the microbial communities were separated by different plant diversity based on DCA. The soil microbial diversity was in accord with plant diversity. Soil microbial community exhibited different z value with different plant diversity, z = 0.0449 with higher plant diversity and z = 0.0583 with lower plant diversity (P< 0.0001). These results suggest that …
Date: May 17, 2010
Creator: Liang, Yuting; Wu, Liyou; Clark, Ian; Xue, Kai; Van Nostrand, Joy D.; Deng, Ye et al.
System: The UNT Digital Library

Two Component Signal Transduction in Desulfovibrio Species

The environmentally relevant Desulfovibrio species are sulfate-reducing bacteria that are of interest in the bioremediation of heavy metal contaminated water. Among these, the genome of D. vulgaris Hildenborough encodes a large number of two component systems consisting of 72 putative response regulators (RR) and 64 putative histidinekinases (HK), the majority of which are uncharacterized. We classified the D. vulgaris Hildenborough RRs based on their output domains and compared the distribution of RRs in other sequenced Desulfovibrio species. We have successfully purified most RRs and several HKs as His-tagged proteins. We performed phospho-transfer experiments to verify relationships between cognate pairs of HK and RR, and we have also mapped a few non-cognate HK-RR pairs. Presented here are our discoveries from the Desulfovibrio RR categorization and results from the in vitro studies using purified His tagged D. vulgaris HKs and RRs.
Date: May 17, 2010
Creator: Luning, Eric; Rajeev, Lara; Ray, Jayashree & Mukhopadhyay, Aindrila
System: The UNT Digital Library

Appraisal factors associated with depression in college students

This poster examines the relationships between the selected psychological factors of loneliness, positive state of mine, and forgiveness, and depressive symptoms in college students.
Date: May 23, 2009
Creator: Haynes, Megan; Vosvick, Mark A. & Chng, Chwee-Lye
System: The UNT Digital Library

Negative Self-Image, Self Forgiveness, and Angry Feelings in HIV Positive Individuals

This poster discusses how forgiveness of self may be more effective for HIV+ individuals with a negative self-image.
Date: May 22, 2009
Creator: Ridings, John; Vosvick, Mark A.; Chng, Chwee-Lye & Catalano, Denise E.
System: The UNT Digital Library

[Turtle Creek Chorale: you are different? so what.]

Poster from the Turtle Creek Chorale Collection for their "you are different? so what." event which took place at the Meyerson Symphony Center in May, 2009. Four close-up photographs of faces are visible on the left side of the poster.
Date: May 2009
Creator: Turtle Creek Chorale
System: The UNT Digital Library

Negative Affect: Perceived Stress, Relationship Avoidance, and Morality-Conscience Guilt

This poster examines the relationships between the psychosocial factors of perceived stress, relationship avoidance, morality-conscience guilt, and the outcome of negative affect in college students.
Date: May 23, 2008
Creator: Renwick, Anthony; Chng, Chwee-Lye & Vosvick, Mark A.
System: The UNT Digital Library

Stigmatized by Disease: Loneliness and Forgiveness in HIV+ Women

This poster explores the potential for women living with HIV/AIDS, who have been stigmatized by disease, to benefit from forgiveness training.
Date: May 23, 2008
Creator: Hua, William Q. & Vosvick, Mark A.
System: The UNT Digital Library

Changes in HIV-Related Concerns and Depression over Time

This poster illustrates a study to determine if concerns and depression change over time for each gender after receiving an HIV diagnosis and throughout the disease course.
Date: May 22, 2008
Creator: Martin, Luci A. & Vosvick, Mark A.
System: The UNT Digital Library

Maladaptive Coping, Stigma, and Forgiveness in HIV+ Adults

This poster examines how stigma encourages maladaptive coping strategies, which may discourage people living with HIV from seeking medical treatment.
Date: May 22, 2008
Creator: Hill, Jonathan & Vosvick, Mark A.
System: The UNT Digital Library

Romantic Attachment Style, Self-Esteem, and Forgiveness: Correlates of Depression in College Students

This poster examines forgiveness, self-esteem, and depression in a college population.
Date: May 22, 2008
Creator: Perales, Marissa & Vosvick, Mark A.
System: The UNT Digital Library

Comparison of Predictive Models for PV Module Performance (Presentation)

This paper examines three models used to estimate the maximum power (P{sub m}) of PV modules when the irradiance and PV cell temperature are known: (1) the power temperature coefficient model, (2) the PVFORM model, and (3) the bilinear interpolation model. A variation of the power temperature coefficient model is also presented that improved model accuracy. For modeling values of P{sub m}, an 'effective' plane-of-array (POA) irradiance (E{sub e}) and the PV cell temperature (T) are used as model inputs. Using E{sub e} essentially removes the effects of variations in solar spectrum and reflectance losses, and permits the influence of irradiance and temperature on model performance for P{sub m} to be more easily studied. Eq. 1 is used to determine E{sub e} from T and the PV module's measured short-circuit current (I{sub sc}). Zero subscripts denote performance at Standard Reporting Conditions (SRC).
Date: May 1, 2008
Creator: Marion, B.
System: The UNT Digital Library

Crystal Silicon Heterojunction Solar Cells by Hot-wire CVD (Presentation)

None
Date: May 1, 2008
Creator: Wang, Q.; Page, M. R.; Iwaniczko, E.; Xu, Y. Q.; Roybal, L.; Bauer, R. et al.
System: The UNT Digital Library

Photoconductive Decay Lifetime and Suns-Voc Diagnostics of Efficient Heterojunction Solar Cells

None
Date: May 1, 2008
Creator: Page, M. R.; Iwaniczko, E.; Xu, Y.; Roybal, L.; Bauer, R.; Yuan, H.-C. et al.
System: The UNT Digital Library

[Concert Poster: David Dondero]

Poster/flyer advertising a concert by David Dondero with The Unfortunate Heads and Mount Righteous on May 10, 2007, at Dan's Silverleaf in Denton, TX. Poster features the album art for Simple Love, a gradient red to yellow background with a painting of David Dondero.
Date: May 10, 2007
Creator: unknown
System: The UNT Digital Library

Photon and neutron productions studies in the MIPP experiment

None
Date: May 1, 2006
Creator: Nigmanov, Turgun
System: The UNT Digital Library

[Pictures from First Flight Week and Howdy Week, '04-'05]

A document collecting pictures from First Flight Week and Howdy Week where the UNT Multicultural Center set up stations with games and snacks for students. It was included on the website for the organization.
Date: May 23, 2005
Creator: University of North Texas. Multicultural Center.
System: The UNT Digital Library

[Pictures from the Multicultural Center website, '04-'05]

A document collecting pictures from events hosted by the UNT Multicultural Center in the 2004-2005 academic year. It was included in the website for the organization.
Date: May 23, 2005
Creator: University of North Texas. Multicultural Center.
System: The UNT Digital Library

[Concert Poster: May 2004]

Poster/flyer advertising the full performance lineup for May 2004, at Rubber Gloves Rehearsal Studios.
Date: May 2004
Creator: unknown
System: The UNT Digital Library

[Antiques to Zebras Auction 2000: Island Treasures]

Poster from the Turtle Creek Chorale Collection for their "Antiques to Zebras Auction 2000" event which occurred on May 25th at the Morton H. Meyerson Symphony Center. An illustration of a beachside cabin underneath a palm tree decorates the poster.
Date: May 25, 2000
Creator: Turtle Creek Chorale
System: The UNT Digital Library

[Turtle Creek Chorale: Let music live!]

Poster from the Turtle Creek Chorale Collection for their "Let Music Live!" event which celebrated the opening of Fort Worth's Bass Performance Hall. A photograph of a relief sculpture of an angel appears on the poster.
Date: May 17, 1998
Creator: Turtle Creek Chorale
System: The UNT Digital Library