FERONIA and wall-associated kinases coordinate defense induced by lignin modification in plant cell walls (open access)

FERONIA and wall-associated kinases coordinate defense induced by lignin modification in plant cell walls

Article discusses authors' findings that through genetic screening for suppressors of defense gene induction in the low lignin ccr1-3 mutant of Arabidopsis thaliana, we found that loss of function of the receptor-like kinase FERONIA, although not restoring growth, affected cell wall remodeling and blocked release of elicitor-active pectic polysaccharides as a result of the ccr1-3 mutation. They determine that engineering plant cell walls will require development of ways to bypass endogenous pectin signaling pathways.
Date: March 10, 2023
Creator: Liu, Chang; Yu, Hasi; Voxeur, Aline; Rao, Xiaolan & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Using CRISPR/Cas to enhance gene expression for crop trait improvement by editing miRNA targets (open access)

Using CRISPR/Cas to enhance gene expression for crop trait improvement by editing miRNA targets

Article states that gene editing tools such as CRISPR/Cas9 are often thought of as a means to prevent gene expression; however, a more subtle and yet powerful approach is the enhancement of gene expression by precise deletion of repressor sites within a gene of interest. Authors argue that gene editing of miRNA target sites is preferable over deletion of the miRNA genes themselves, given that it avoids the pitfalls of unspecific derepression of miRNA target(s) beyond the gene of interest.
Date: January 10, 2023
Creator: Ferreira, Savio S. & Reis, Rodrigo S.
Object Type: Article
System: The UNT Digital Library
Transcriptome Analysis Uncovers the Gene Expression Profile of Hemileia vastatrix (Race XXXIII) during the Interactions with Resistant and Susceptible Coffee (open access)

Transcriptome Analysis Uncovers the Gene Expression Profile of Hemileia vastatrix (Race XXXIII) during the Interactions with Resistant and Susceptible Coffee

This article presents research to sequence the transcriptome of H. vastatrix race XXXIII to obtain a database for use as a reference in studies of the interaction between the fungus and coffee. In addition, the authors aim to identify differentially expressed genes that have the potential to act as effector proteins during the interaction.
Date: December 27, 2021
Creator: Castro, Isabel Samila Lima; Freitas-Lopes, Rejane do Livramento; de Siqueira Ferreira, Sávio; Maciel, Talles Eduardo Ferreira; Florez, Juan Carlos; Zambolim, Eunize Maciel et al.
Object Type: Article
System: The UNT Digital Library
The metabolic cost of turning right side up in the Mediterranean spur-thighed tortoise (Testudo graeca) (open access)

The metabolic cost of turning right side up in the Mediterranean spur-thighed tortoise (Testudo graeca)

Article examining the the metabolic cost of self-righting in the terrestrial Mediterranean spur-thighed tortoise using respirometry and kinematic video analysis and comparing this to the metabolic cost of locomotion at a moderate, easily sustainable speed. The results found that self-righting is, relatively, metabolically expensive and costs around two times the mass-specific power required to walk.
Date: January 10, 2022
Creator: Ewart, Heather E.; Tickle, Peter G.; Sellers, William I.; Lambertz, Markus; Crossley, Dane A., II & Codd, Jonathan R.
Object Type: Article
System: The UNT Digital Library
Developmental Physiology: Grand Challenges (open access)

Developmental Physiology: Grand Challenges

Article indicating directions in which the field of Developmental Physiology might move. It suggests three categories of challenges: demonstrating broad relevance, promoting conceptual advances, and improving experimental approaches.
Date: June 10, 2021
Creator: Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Evidence of Endozoochory in Upland Geese Chloephaga picta and White-Bellied Seedsnipes Attagis malouinus in Sub-Antarctic Chile (open access)

Evidence of Endozoochory in Upland Geese Chloephaga picta and White-Bellied Seedsnipes Attagis malouinus in Sub-Antarctic Chile

This article evaluates the role of endozoochory in herbivorous and sympatric bird species in sub-Antarctic Chile. The authors hypothesize that fragments of bryophyte gametophytes retrieved from their feces are viable and capable of regenerating new plant tissue. This relationship may have important implications in the way bryophytes disperse and colonize habitats facing climate change.
Date: June 10, 2021
Creator: Lázaro, Xenabeth A.; Mackenzie, Roy & Jiménez, Jaime E.
Object Type: Article
System: The UNT Digital Library
Range-wide genetic structure in the thorn-tailed rayadito suggests limited gene flow towards peripheral populations (open access)

Range-wide genetic structure in the thorn-tailed rayadito suggests limited gene flow towards peripheral populations

Article assessing range-wide genetic structure and contemporary gene flow in the thorn-tailed rayadito (Aphrastura spinicauda), a passerine bird inhabiting the temperate forests of South America.
Date: June 10, 2020
Creator: Botero-Delgadillo, Esteban; Quirici, Veronica; Poblete, Yanina; Acevedo, Matías; Cuevas, Élfego; Bravo, Camila et al.
Object Type: Article
System: The UNT Digital Library
Underlying Ossification Phenotype in a Murine Model of Metastatic Synovial Sarcoma (open access)

Underlying Ossification Phenotype in a Murine Model of Metastatic Synovial Sarcoma

This article presents the analysis of genetic mouse models of synovial sarcoma to determine the extent of ossification in the tumors and its relationship with morbidity. The authors noted higher ossification within their metastatic mouse model of synovial sarcoma. Their conclusion is that both metastasis and ossification are dependent on time, but that they are independent of one another.
Date: April 10, 2020
Creator: Kirkham, Matthew; Kalivas, Austen; Fatema, Kaniz; Luelling, Sarah; Dubansky, Brooke H.; Dubansky, Benjamin et al.
Object Type: Article
System: The UNT Digital Library
Liquid Chromatography Tandem Mass Spectrometry Quantification of ¹³C-Labeling in Sugars (open access)

Liquid Chromatography Tandem Mass Spectrometry Quantification of ¹³C-Labeling in Sugars

This article describes a new methodology for monitoring sucrose labeling using liquid chromatography tandem mass spectrometry (LC-MS/MS). To date, the most commonly used method to monitor sucrose labeling is by nuclear magnetic resonance, which requires substantial amounts of biological sample.
Date: January 10, 2020
Creator: Cocuron, Jean-Christophe; Ross, Zacchary & Alonso, Ana P.
Object Type: Article
System: The UNT Digital Library
Retinal oxygen supply shaped the functional evolution of the vertebrate eye (open access)

Retinal oxygen supply shaped the functional evolution of the vertebrate eye

Article explores the hypothesis that oxygen diffusion limited the evolution of retinal morphology by reconstructing the evolution of retinal thickness and the various mechanisms for retinal oxygen supply, including capillarization and acid-induced haemoglobin oxygen unloading.
Date: December 10, 2019
Creator: Damsgaard, Christian; Lauridsen, Henrik; Funder, Anette MD; Thomsen, Jesper S.; Desvignes, Thomas; Crossley, Dane A., II et al.
Object Type: Article
System: The UNT Digital Library
Cotton CENTRORADIALIS/TERMINAL FLOWER 1/SELF-PRUNING genes functionally diverged to differentially impact plant architecture (open access)

Cotton CENTRORADIALIS/TERMINAL FLOWER 1/SELF-PRUNING genes functionally diverged to differentially impact plant architecture

This article characterizes the CETS gene family from tetraploid cotton in order to understand the regulation of cotton architecture and exploit these principles to enhance crop productivity.
Date: September 10, 2018
Creator: Prewitt, Sarah F.; Ayre, Brian G. & McGarry, Roisin C.
Object Type: Article
System: The UNT Digital Library

Developmental phenotypic plasticity helps bridge stochastic weather events associated with climate change

This article posits that the frequently abrupt environmental changes accompanying much longer-term general climate change require consideration of the true nature of environmental change coupled with an expansion of focus to consider developmental phenotypic plasticity.
Date: May 10, 2018
Creator: Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Correction: Role of novel histone modifications in cancer (open access)

Correction: Role of novel histone modifications in cancer

Correction to the article "Role of novel histone modifications in cancer".
Date: April 10, 2018
Creator: Shanmugam, Muthu K.; Arfuso, Frank; Arumugam, Surendar; Chinnathambi, Arunachalam; Jinsong, Bian; Warrier, Sudha R. et al.
Object Type: Article
System: The UNT Digital Library
An Updated Understanding of Texas Bumble Bee (Hymenoptera: Apidae) Species Presence and Potential Distributions in Texas, Usa (open access)

An Updated Understanding of Texas Bumble Bee (Hymenoptera: Apidae) Species Presence and Potential Distributions in Texas, Usa

This article aims to update existing Texas bumble bee presence databases, model statewide species distributions, and identify conservation target areas.
Date: August 10, 2017
Creator: Beckham, Jessica L. & Atkinson, Samuel F.
Object Type: Article
System: The UNT Digital Library
Developmental Transcriptomic Analyses for Mechanistic Insights Into Critical Pathways Involved in Embryogenesis of Pelagic Mahi-Mahi (Coryphaena Hippurus) (open access)

Developmental Transcriptomic Analyses for Mechanistic Insights Into Critical Pathways Involved in Embryogenesis of Pelagic Mahi-Mahi (Coryphaena Hippurus)

This article characterizes the developmental transcriptome of mahi-mahi by means of high throughput sequencing at three critical developmental stages.
Date: July 10, 2017
Creator: Xu, Elvis Genbo; Mager, Edward M.; Grosell, Martin; Stieglitz, John D.; Hazard, E. Starr; Hardiman, Gary et al.
Object Type: Article
System: The UNT Digital Library
Body shape differences in a pair of closely related Malawi cichlids and their hybrids: Effects of genetic variation, phenotypic plasticity, and transgressive segregation (open access)

Body shape differences in a pair of closely related Malawi cichlids and their hybrids: Effects of genetic variation, phenotypic plasticity, and transgressive segregation

Article describes study which investigated the contributions of both genetic and plastic components for differences in body shape in two species of Lake Malawi cichlids using wild‐caught specimens and a common garden experiment.
Date: May 10, 2017
Creator: Husemann, Martin; Tobler, Michael; McCauley, Cagney; Ding, Baoqing & Danley, Patrick D.
Object Type: Article
System: The UNT Digital Library
Does flooding effect the apparent survival and body condition of a ground foraging migrant passerine? (open access)

Does flooding effect the apparent survival and body condition of a ground foraging migrant passerine?

This study demonstrates the vulnerability of species to extreme hydrological events, an increasing threat due to climate change.
Date: April 10, 2017
Creator: Reiley, Bryan M.; Benson, Thomas J.; Everitts, Jeremy & Bednarz, James C.
Object Type: Article
System: The UNT Digital Library
Evidence for the Involvement of Electrical, Calcium and ROS Signaling in the Systemic Regulation of Non-Photochemical Quenching and Photosynthesis (open access)

Evidence for the Involvement of Electrical, Calcium and ROS Signaling in the Systemic Regulation of Non-Photochemical Quenching and Photosynthesis

Article presents study in which pulse amplitude-modulated Chl fluorescence imaging and surface electrical potential measurements accompanied by pharmacological treatments were employed to study stimuli-induced electrical signals in leaves from a broad range of plant species and in Arabidopsis thaliana mutants.
Date: February 10, 2017
Creator: Białasek, Maciej; Górecka, Magdalena; Mittler, Ron & Karpiński, Stanisław
Object Type: Article
System: The UNT Digital Library
Spatial and Temporal Mapping of Key Lipid Species in Brassica napus Seeds (open access)

Spatial and Temporal Mapping of Key Lipid Species in Brassica napus Seeds

This article describes the use of matrix-assisted laser/desorption ionization-mass spectrometry imaging (MALDI-MSI) to study the spatial distribution of two major lipid species, triacylglycerols and phosphatidylcholines.
Date: February 10, 2017
Creator: Woodfield, Helen K.; Sturtevant, Drew; Borisjuk, Ljudmilla; Munz, Eberhard; Guschina, Irina A.; Chapman, Kent D. et al.
Object Type: Article
System: The UNT Digital Library
Novel aromatase inhibitors selection using induced fit docking and extra precision methods: Potential clinical use in ER-alpha-positive breast cancer (open access)

Novel aromatase inhibitors selection using induced fit docking and extra precision methods: Potential clinical use in ER-alpha-positive breast cancer

This article aims to identify new molecules which could block or suppress the activity of aromatase enzyme by molecular docking studies using Schrödinger-Maestro v9.3.
Date: October 10, 2016
Creator: Kumavath, Ranjith; Azad, Manan; Devarapalli, Pratap; Tiwari, Sandeep; Kar, Shreya; Barh, Debmalya et al.
Object Type: Article
System: The UNT Digital Library
Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages (open access)

Comparative cell-specific transcriptomics reveals differentiation of C₄ photosynthesis pathways in switchgrass and other C₄ lineages

This article provides an mesophyll and bundle sheath cell type-specific transcriptome data set from the monocot NAD-malic enzyme subtype switchgrass (Panicum virgatum).
Date: December 10, 2015
Creator: Rao, Xiaolan; Lu, Nan; Li, Guifen; Nakashima, Jin; Tang, Yuhong & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging (open access)

Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

This article demonstrates the power of infrared microspectroscopy to rapidly image plan sections to provide a snapshot of the chemical composition of the cell.
Date: July 10, 2015
Creator: Lupoi, Jason S.; Smith-Mortiz, Andreia; Singh, Seema; McQualter, Richard B.; Scheller, Henrik V.; Simmons, Blake A. et al.
Object Type: Article
System: The UNT Digital Library
Commentary: Feedback stabilizes propagation of synchronous spiking in cortical neural networks (open access)

Commentary: Feedback stabilizes propagation of synchronous spiking in cortical neural networks

This article provides a commentary on the article "Feedback stabilizes propagation of synchronous spiking in cortical neural networks" by Moldakarimov, S., Bazhenov, M., and Sejnowski, T.J.
Date: June 10, 2015
Creator: Claverol-Tinturé, Enric & Gross, Guenter W.
Object Type: Article
System: The UNT Digital Library
Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass (open access)

Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass

Article on factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass.
Date: September 10, 2014
Creator: McQualter, Richard B.; Somleva, Maria N.; Gebbie, Leigh K.; Li, Xuemei; Petrasovits, Lars A.; Snell, Kristi D. et al.
Object Type: Article
System: The UNT Digital Library