Analysis of Pectin-derived Monosaccharides from Arabidopsis Using GC–MS (open access)

Analysis of Pectin-derived Monosaccharides from Arabidopsis Using GC–MS

Article describes how pectin is a complex polysaccharide present in the plant cell wall, whose composition is constantly remodeled to adapt to environmental or developmental changes. Here, authors describe a quick and efficient gas chromatography–mass spectrometry (GC–MS)-based method that allows the differential analysis of pectin monosaccharide composition in plants under different conditions or between mutant plants and their respective wild types.
Date: August 20, 2023
Creator: Scholz, Patricia; Chapman, Kent Dean; Ischebeck, Till & Guzha, Athanas
Object Type: Article
System: The UNT Digital Library
Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data (open access)

Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data

Article describes how taxonomic profiling of ancient metagenomic samples is challenging due to the accumulation of specific damage patterns on DNA over time. The authors performed a comprehensive evaluation on simulated metagenomes representing human dental calculus microbiome, with the level of DNA damage successively raised to mimic modern to ancient metagenomes.
Date: October 2, 2023
Creator: Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Bibliometric Analysis of Integrated Pest Management Practices (open access)

Bibliometric Analysis of Integrated Pest Management Practices

Article discusses how integrated pest management (IPM) is a wide-ranging strategy that involves tactics for the structural control of pests and diseases, also known as integrated pest control (IPC). The authors' prime aim of this study is to explore global scientific publications regarding integrated pest management and map the recent global trends in this innovative research domain, thereby providing future research directions based on dynamic observations.
Date: July 26, 2023
Creator: Zhou, Xi; Yang, Chongxi; Yesmin, Sabina; Islam, Md Ashraful & Sarkar, Apurbo
Object Type: Article
System: The UNT Digital Library
Biocultural Calendars Across Four Ethnolinguistic Communities in Southwestern South America (open access)

Biocultural Calendars Across Four Ethnolinguistic Communities in Southwestern South America

Article describes how, since the mid-20th century, the so-called Great Acceleration has amplified processes of ecosystem degradation, extinction of biological species, displacement of local peoples, losses of languages, and cultural diversity. The authors examine cultural practices and socio-environmental changes across four contrasting ethnolinguistic communities in southwestern South America, from southern to northern Chile along a marked climatic gradient to show the broad application of the concept of biocultural calendars.
Date: April 20, 2023
Creator: Rozzi, Ricardo, 1960-; Álvarez, Ricardo; Castro, Victoria; Núñez, David; Ojeda, Jaime & Tauro, Alejandra
Object Type: Article
System: The UNT Digital Library
Correction: A modified aeroponic system for growing small-seeded legumes and other plants to study root systems (open access)

Correction: A modified aeroponic system for growing small-seeded legumes and other plants to study root systems

This is a correction to an article. The affiliation of the first author was published incorrectly.
Date: March 25, 2023
Creator: Cai, Jingya; Veerappan, Vijaykumar; Arildsen, Kate; Sullivan, Catrina; Piehowicz, Megan; Frugoli, Julia et al.
Object Type: Article
System: The UNT Digital Library
Correction: Vu et al. Specific Changes in Arabidopsis thaliana Rosette Lipids during Freezing Can Be Associated with Freezing Tolerance. Metabolites 2022, 12, 385 (open access)

Correction: Vu et al. Specific Changes in Arabidopsis thaliana Rosette Lipids during Freezing Can Be Associated with Freezing Tolerance. Metabolites 2022, 12, 385

Article is a correction to an error in the original publication. The enzymatic step catalyzed by oxophytodienoic acid reductase 3 was misstated. A correction has been made to Section 2. Results and Discussion, Subsection 2.13. Lipids of Plants with Mutations in Lipid-Related Genes, Paragraph 1.
Date: March 30, 2023
Creator: Vu, Hieu Sy; Shiva, Sunitha; Samarakoon, Thilani; Li, Maoyin; Sarowar, Sujon; Roth, Mary R. et al.
Object Type: Article
System: The UNT Digital Library
DNA metabarcoding captures different macroinvertebrate biodiversity than morphological identification approaches across a continental scale (open access)

DNA metabarcoding captures different macroinvertebrate biodiversity than morphological identification approaches across a continental scale

Article describes how DNA-based aquatic biomonitoring methods show promise to provide rapid, standardized, and efficient biodiversity assessment to supplement and in some cases replace current morphology-based approaches that are often less efficient and can produce inconsistent results. The authors present a comparison of DNA metabarcoding and morphological identification, leveraging national-scale, open-source, ecological datasets from the National Ecological Observatory Network.
Date: July 19, 2023
Creator: Emmons, Sean C.; Compson, Zacchaeus Greg; Malish, Megan C.; Busch, Michelle H.; Saenz, Veronica; Higgins, Kierstyn T. et al.
Object Type: Article
System: The UNT Digital Library
Dry blood spot samples to monitor immune-associated mRNA expression in intervention studies: Impact of Baker's yeast beta glucan (open access)

Dry blood spot samples to monitor immune-associated mRNA expression in intervention studies: Impact of Baker's yeast beta glucan

Article describes how monitoring immunological response to physical stressors in a field setting is challenging because existing methods require a laboratory visit and traditional blood collection via venipuncture. The purpose of this study was to determine if our optimized dry blood spot (DBS) methodology yields sufficient total RNA to quantify the effect of Baker's Yeast Beta Glucan supplementation on post-exercise mRNA expression.
Date: September 22, 2023
Creator: McFarlin, Brian K.; Bridgeman, Elizabeth A.; Vingren, Jakob L. & Will, David W.
Object Type: Article
System: The UNT Digital Library
Effectiveness of a Single Prolonged Aerobic Exercise Session on Executive Function Task Performance in Physically Active Adults (21–70 Years of Age) (open access)

Effectiveness of a Single Prolonged Aerobic Exercise Session on Executive Function Task Performance in Physically Active Adults (21–70 Years of Age)

Authors of the article sought to examine the effectiveness of an acute prolonged exercise session on post-exercise executive function in physically active adults and to assess if age or pre-exercise cognitive performance was predictive of the magnitude of change in executive task performance. Their results support the effectiveness of a single prolonged exercise bout to augment executive function in physically active adults, irrespective of age.
Date: February 4, 2023
Creator: Yates, Brandon A.; Armstrong, Lawrence E.; Lee, Elaine C.; Unverzagt, Frederick W.; Dadzie, Ekow Jr.; Williamson, Keith et al.
Object Type: Article
System: The UNT Digital Library
Effects of cultivar and nitrogen application rate on lint, seed, oil, and protein yields of field-grown cotton (open access)

Effects of cultivar and nitrogen application rate on lint, seed, oil, and protein yields of field-grown cotton

Article describes how the objective of this study was to evaluate the lint, seed, oil, and protein yield responses of cultivars with different seed mass and composition to N application rates (0–168 kg N ha−1) for field-grown cotton. The authors conclude that variability in the distribution of photosynthates to fiber and seed as well as seed oil and protein composition can significantly alter trends in fiber, seed, and seed component yields in response to cultivar or N application rates for field-grown cotton.
Date: March 9, 2023
Creator: Parkash, Ved; Snider, John L.; Bruce, Aaron; Ermanis, Alessandro; Virk, Gurpreet; Kaur, Navneet et al.
Object Type: Article
System: The UNT Digital Library
Exposure to diesel exhaust particulates and desert sand dust generates microvesicle particles and platelet-activating factor agonists (open access)

Exposure to diesel exhaust particulates and desert sand dust generates microvesicle particles and platelet-activating factor agonists

The authors address the editor in their article, stating that the majority of the general population, particularly, servicemen and women deployed across the globe are exposed to various airborne hazards, including diesel exhaust particulate (DEP) and desert sand dust (DSD). Studies, including the author's study, have shown that exposure to ROS-generating pro-oxidative stressors ranging from environmental carcinogens to pollutants, including cigarette smoke, produces a class of potent phospholipid mediators, Platelet-activating factor (PAF) and PAF-like agonists via oxidative cleavage of lipid membrane glycerophosphocholines (GPCs).
Date: April 8, 2023
Creator: Thyagarajan, Anita; Rapp, Christine M.; Schneider, Leah; Lund, Amie K.; Travers, Jeffrey B. & Sahu, Ravi P.
Object Type: Article
System: The UNT Digital Library
FERONIA and wall-associated kinases coordinate defense induced by lignin modification in plant cell walls (open access)

FERONIA and wall-associated kinases coordinate defense induced by lignin modification in plant cell walls

Article discusses authors' findings that through genetic screening for suppressors of defense gene induction in the low lignin ccr1-3 mutant of Arabidopsis thaliana, we found that loss of function of the receptor-like kinase FERONIA, although not restoring growth, affected cell wall remodeling and blocked release of elicitor-active pectic polysaccharides as a result of the ccr1-3 mutation. They determine that engineering plant cell walls will require development of ways to bypass endogenous pectin signaling pathways.
Date: March 10, 2023
Creator: Liu, Chang; Yu, Hasi; Voxeur, Aline; Rao, Xiaolan & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Formation of cotton bast fiber as a means to modulate carbon capture and increase bio-product utilization (open access)

Formation of cotton bast fiber as a means to modulate carbon capture and increase bio-product utilization

Data management plan for the grant "Formation of cotton bast fiber as a means to modulate carbon capture and increase bio-product utilization."
Date: 2023-05-01/2026-04-30
Creator: Ayre, Brian G.
Object Type: Text
System: The UNT Digital Library
A gene network-driven approach to infer novel pathogenicity-associated genes: application to Pseudomonas aeruginosa PAO1 (open access)

A gene network-driven approach to infer novel pathogenicity-associated genes: application to Pseudomonas aeruginosa PAO1

Article describes how within the genome of a pathogen is the information regarding factors responsible for its pathogenicity. the authors of the article developed a novel pipeline that uses standard protocol in combination with gene co-expression network of a pathogen constructed using publicly available RNA-Seq data sets.
Date: November 3, 2023
Creator: De, Ronika; Whiteley, Marvin & Aza, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Genetic Differentiation of the South Florida Red-Shouldered Hawk (Buteo lineatus extimus) from the Nominate Subspecies (Buteo lineatus lineatus) (open access)

Genetic Differentiation of the South Florida Red-Shouldered Hawk (Buteo lineatus extimus) from the Nominate Subspecies (Buteo lineatus lineatus)

Article discusses how the south Florida subspecies of the Red-shouldered Hawk (Buteo lineatus extimus) is distinctly paler and smaller than other subspecies, reproduces at a lower rate, and can occupy very different habitats such as open marshes and grasslands with only scattered trees. The authors evaluated population differentiation between the south Florida population of Red-shouldered Hawks and two populations of eastern Red-shouldered Hawks (B. l. lineatus) in suburban (Cincinnati) and rural (Hocking Hills) environments in southern Ohio.
Date: March 1, 2023
Creator: Dykstra, Madeline A.; Marain, Donna M.; Wrona, Anna M.; Dysktra, Cheryl R.; Farrington, Heather L.; Johnson, Jeff A. et al.
Object Type: Article
System: The UNT Digital Library
Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas (open access)

Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas

Data management plan for the grant, "Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas."
Date: 2023-09-15/2028-08-31
Creator: Gregory, Andrew & Molina, Clarissa
Object Type: Text
System: The UNT Digital Library
A Highly Contiguous and Annotated Genome Assembly of the Lesser Prairie-Chicken (Tympanuchus pallidicinctus) (open access)

A Highly Contiguous and Annotated Genome Assembly of the Lesser Prairie-Chicken (Tympanuchus pallidicinctus)

Article asserts that the Lesser Prairie-Chicken (Tympanuchus pallidicinctus; LEPC) is an iconic North American prairie grouse, renowned for ornate and spectacular breeding season displays, a species that has been declining in population across much of its historical range, with corresponding precipitous declines in contemporary population abundance, largely due to climatic and anthropogenic factors. The authors describe an annotated reference genome that was generated from a LEPC sample collected from the southern DPS.
Date: March 17, 2023
Creator: Black, Andrew N.; Bondo, Kristin J.; Mularo, Andrew; Hernandez, Alvaro; Yu, Yachi; Stein, Carleigh M. et al.
Object Type: Article
System: The UNT Digital Library
Histological features of non-alcoholic fatty liver disease revealed in response to mixed vehicle emission exposure and consumption of a high-fat diet in wildtype C57Bl/6 male mice (open access)

Histological features of non-alcoholic fatty liver disease revealed in response to mixed vehicle emission exposure and consumption of a high-fat diet in wildtype C57Bl/6 male mice

Article describes how non-alcoholic fatty liver disease (NAFLD) is currently plaguing the population at pandemic proportions and is expected to become more prevalent over the next decade. The authors investigated the hypothesis that exposure to a mixture of gasoline and diesel engine emissions (MVE), coupled with the concurrent consumption of a HF diet, promotes the development of a NAFLD phenotype within the liver.
Date: June 6, 2023
Creator: Schneider, Leah J.; Santiago, Isabella; Johnson, Bailee; Stanley, Analana Hays; Penaredondo, Bea & Lund, Amie K.
Object Type: Article
System: The UNT Digital Library
Homologues and homology and their related terms in phylogenetic systematics (open access)

Homologues and homology and their related terms in phylogenetic systematics

Article describes how, in the field of phylogenetic systematics, the terms homology and homologue and their relationship to cladistic terms such as character, character state, synapomorphy and symplesiomorphy, as well as their relationships to each other, have been and are still discussed frequently. A recent re-emergence of concepts of homology/homologue free of any reference to explanatory hypotheses prompted the authors to explore these concepts and their relationships to each other as well as to the concept of morpheme, as introduced recently.
Date: February 4, 2023
Creator: Göpel, Torben & Richter, Stefan
Object Type: Article
System: The UNT Digital Library
Insights into the Bioinformatics and Transcriptional Analysis of the Elongator Complexes (ELPs) Gene Family of Wheat: TaELPs Contribute to Wheat Abiotic Stress Tolerance and Leaf Senescence (open access)

Insights into the Bioinformatics and Transcriptional Analysis of the Elongator Complexes (ELPs) Gene Family of Wheat: TaELPs Contribute to Wheat Abiotic Stress Tolerance and Leaf Senescence

Article states that elongator complexes (ELPs) are the protein complexes that promote transcription through histone acetylation in eukaryotic cells and interact with elongating RNA polymerase II. ELPs’ role in plant growth and development, signal transduction, and response to biotic and abiotic stresses have been confirmed in model plants, but the functions of the wheat ELP genes are not well documented. The present study identified 18 members of the ELPs from the wheat genome with a homology search.
Date: February 20, 2023
Creator: Guo, Feng; Islam, Md Ashraful; Lv, Chenxu; Jin, Xiujuan; Sun, Lili; Zhao, Kai et al.
Object Type: Article
System: The UNT Digital Library
A Laser Microdissection System to Enhance Agricultural and Food Research in the North Texas and Southern Oklahoma Region (open access)

A Laser Microdissection System to Enhance Agricultural and Food Research in the North Texas and Southern Oklahoma Region

Data management plan for the grant, "A Laser Microdissection System to Enhance Agricultural and Food Research in the North Texas and Southern Oklahoma Region."
Date: 2023-09-01/2027-08-31
Creator: Ayre, Brian G.
Object Type: Text
System: The UNT Digital Library
Manipulating microRNA miR408 enhances both biomass yield and saccharification efficiency in poplar (open access)

Manipulating microRNA miR408 enhances both biomass yield and saccharification efficiency in poplar

Article describes how the conversion of lignocellulosic feedstocks to fermentable sugar for biofuel production is inefficient, and most strategies to enhance efficiency directly target lignin biosynthesis, with associated negative growth impacts. The authors demonstrate, for both laboratory-and field-grown plants, that expression of Pag-miR408 in poplar significantly enhances saccharification, with no requirement for acid-pretreatment, while promoting plant growth.
Date: July 18, 2023
Creator: Guo, Yayu; Wang, Shufang; Yu, Keji; Wang, Hou-Ling; Xu, Huimin; Song, Chengwei et al.
Object Type: Article
System: The UNT Digital Library
Metabolic and transcriptomic study of pennycress natural variation identifies targets for oil improvement (open access)

Metabolic and transcriptomic study of pennycress natural variation identifies targets for oil improvement

Article describes how, although pennycress, a winter annual, could be grown as a dedicated bioenergy crop, an increase in its seed oil content is required to improve its economic competitiveness. In this work, the authors combined biomass composition with metabolomic and transcriptomic studies of developing embryos from 22 pennycress natural variants to identify targets for oil improvement.
Date: June 19, 2023
Creator: Arias, Cintia Lucía; García Navarrete, Leidy Tatiana; Mukundi, Eric; Swanson, Tyler; Yang, Fan; Hernandez, Jonathan et al.
Object Type: Article
System: The UNT Digital Library
Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility (open access)

Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility

Article discusses the Mexican cavefish Astyanax mexicanus, has lost moderate-to-vigorous activity following cave colonization, reaching basal swim speeds ~3.7-fold slower than their river-dwelling counterpart. Collectively, the authors reveal broad skeletal muscle changes following cave colonization, displaying an adaptive skeletal muscle phenotype reminiscent to mammalian disuse and high-fat models while simultaneously maintaining a unique capacity for sustained muscle contraction via enhanced glycogen metabolism.
Date: January 24, 2023
Creator: Olsen, Luke; Levy, Michaella; Medley, J. Kyle; Hassan, Huzaifa; Miller, Brandon; Alexander, Richard et al.
Object Type: Article
System: The UNT Digital Library