2012 MUTAGENESIS GORDON RESEARCH CONFERENCE, AUGUST 19-23, 2012 (open access)

2012 MUTAGENESIS GORDON RESEARCH CONFERENCE, AUGUST 19-23, 2012

The delicate balance among cellular pathways that control mutagenic changes in DNA will be the focus of the 2012 Mutagenesis Gordon Research Conference. Mutagenesis is essential for evolution, while genetic stability maintains cellular functions in all organisms from microbes to metazoans. Different systems handle DNA lesions at various times of the cell cycle and in different places within the nucleus, and inappropriate actions can lead to mutations. While mutation in humans is closely linked to disease, notably cancers, mutational systems can also be beneficial. The conference will highlight topics of beneficial mutagenesis, including full establishment of the immune system, cell survival mechanisms, and evolution and adaptation in microbial systems. Equal prominence will be given to detrimental mutation processes, especially those involved in driving cancer, neurological diseases, premature aging, and other threats to human health. Provisional session titles include Branching Pathways in Mutagenesis; Oxidative Stress and Endogenous DNA Damage; DNA Maintenance Pathways; Recombination, Good and Bad; Problematic DNA Structures; Localized Mutagenesis; Hypermutation in the Microbial World; and Mutation and Disease.
Date: August 23, 2012
Creator: Demple, Bruce
Object Type: Article
System: The UNT Digital Library
AB INITIO STUDY OF ADVANCED METALLIC NUCLEAR FUELS FOR FAST BREEDER REACTORS (open access)

AB INITIO STUDY OF ADVANCED METALLIC NUCLEAR FUELS FOR FAST BREEDER REACTORS

Density-functional formalism is applied to study the ground state properties of {gamma}-U-Zr and {gamma}-U-Mo solid solutions. Calculated heats of formation are compared with CALPHAD assessments. We discuss how the heat of formation in both alloys correlates with the charge transfer between the alloy components. The decomposition curves for {gamma}-based U-Zr and U-Mo solid solutions are derived from Ising-type Monte Carlo simulations. We explore the idea of stabilization of the {delta}-UZr{sub 2} compound against the {alpha}-Zr (hcp) structure due to increase of Zr d-band occupancy by the addition of U to Zr. We discuss how the specific behavior of the electronic density of states in the vicinity of the Fermi level promotes the stabilization of the U{sub 2}Mo compound. The mechanism of possible Am redistribution in the U-Zr and U-Mo fuels is also discussed.
Date: April 23, 2012
Creator: Landa, A; Soderlind, P; Grabowski, B; Turchi, P A; Ruban, A V & Vitos, L
Object Type: Article
System: The UNT Digital Library
Analysis of AGS E880 polarimeter data at Gy = 12.5. (open access)

Analysis of AGS E880 polarimeter data at Gy = 12.5.

Data were collected with the AGS internal (E880) polarimeter at G{gamma} = 12.5 during the FY04 polarized proton run. Measurements were made with forward scintillation counters in coincidence with recoil counter telescopes, permitting an absolute calibration of the polarimeter for both nylon and carbon targets. The results are summarized and they will also be useful for an absolute calibration of the AGS CNI polarimeter at G{gamma} = 12.5.
Date: February 23, 2012
Creator: Cadman, R.; Huang, H.; Krueger, K.; Spinka, H.; Underwood, D. (High Energy Physics) & Laboratory), (Brookhaven National
Object Type: Report
System: The UNT Digital Library
APPENDIX C: HYDROLOGIC SOURCE TERM SCREENING AND DISTRIBUTION (open access)

APPENDIX C: HYDROLOGIC SOURCE TERM SCREENING AND DISTRIBUTION

None
Date: July 23, 2012
Creator: Tompson, A & Zavarin, M
Object Type: Report
System: The UNT Digital Library
The Arabidopsis Wave Complex: Mechanisms Of Localized Actin Polymerization And Growth (open access)

The Arabidopsis Wave Complex: Mechanisms Of Localized Actin Polymerization And Growth

The objective of this project was to discover the protein complexes and control mechanisms that determine the location of actin filament roadways in plant cells. Our work provided the first molecular description of protein complexes that are converted from inactive complexes to active actin filament nucleators in the cell. These discoveries provided a conceptual framework to control to roadways in plant cells that determine the location and delivery of plant metabolites and storage molecules that are relevant to the bioenergy economy.
Date: October 23, 2012
Creator: Szymanski, Daniel
Object Type: Report
System: The UNT Digital Library
BACKSCATTER GUAGE DESCRIPTION FOR INSPECTION OF NEUTRON ABSORBER AND UNIFORMITY (open access)

BACKSCATTER GUAGE DESCRIPTION FOR INSPECTION OF NEUTRON ABSORBER AND UNIFORMITY

This paper describes design, calibration, and testing of a dual He-3 detector neutron backscatter gauge for use in the Savannah River Site Mixed Oxide Fuel project. The gauge is demonstrated to measure boron content and uniformity in concrete slabs used in the facility construction.
Date: May 23, 2012
Creator: Dewberry, R.; Gibbs, K. & Couture, A.
Object Type: Article
System: The UNT Digital Library
Bexar County Parking Garage Photovoltaic Panels (open access)

Bexar County Parking Garage Photovoltaic Panels

The main objective of the Bexar County Parking Garage Photovoltaic (PV) Panel project is to install a PV System that will promote the use of renewable energy. This project will also help sustain Bexar County ongoing greenhouse gas emissions reduction and energy efficiency goals. The scope of this project includes the installation of a 100-kW system on the top level of a new 236,285 square feet parking garage. The PV system consists of 420 solar panels that covers 7,200 square feet and is tied into the electric-grid. It provides electricity to the office area located within the garage. The estimated annual electricity production of the PV system is 147,000 kWh per year.
Date: January 23, 2012
Creator: Weir, Golda
Object Type: Report
System: The UNT Digital Library
Changes to MFRSRCLDOD1MIN Datastream (open access)

Changes to MFRSRCLDOD1MIN Datastream

Significant updates were made to the multifilter rotating shadowband radiometer (MFRSR) cloud optical depth (MFRSRCLDOD) value-added product (VAP) in 2011. The original intent of the update was to add quality control (QC) flags and to update the VAP to use the improved retrievals of liquid water path (LWP) from the Microwave Radiometer Retrievals (MWRRET) VAP rather than the statistical retrievals of LWP from the Microwave Radiometer Line of Sight (MWRLOS) datastream. Although this was originally intended to be a straightforward update of the code, it became more complicated due to the following factors: (1) a new developer and translator team were working with the code; (2) numerous small changes had to be made to the code to consistently implement the QC flags; and (3) ARM standards have changed over the years since the code was originally developed.
Date: May 23, 2012
Creator: McFarlane, S. & Shi, Y.
Object Type: Report
System: The UNT Digital Library
Cleareye In-Ground and In-Concrete DIV Inspections: FY11 Final Report (open access)

Cleareye In-Ground and In-Concrete DIV Inspections: FY11 Final Report

This report summarizes the results of a series of feasibility testing studies for in-ground and in-concrete imaging/detection technologies including radar imaging and acoustic time-of flight method. The objectives of this project are: (1) Design Information Verification (DIV) Tools for In-Concrete Inspections - To determine the feasibility of using holographic radar imaging (HRI), radar imaging, and acoustic time-of-flight (TOF) non-destructive evaluation technologies to detect, locate and identify pipes and voids embedded in standard-density and high-density concrete walls that typify those the IAEA will need to verify during field inspections; (2) DIV Tools for In-Ground Inspections - To determine the feasibility of using HRI and radar imaging non-destructive evaluation technologies to detect, locate, and identify objects buried at various depths made of various materials (metal, plastic, wood, and concrete) and representing geometries that typify those the IAEA will need to verify during field inspections; and (3) Based on the results of the studies, recommend the next steps needed to realize fieldable tools for in-concrete and in-ground inspections (including detection of deeply buried polyvinyl chloride [PVC] pipes) that employ the technologies shown to be feasible.
Date: January 23, 2012
Creator: Braatz, Brett G.; Tedeschi, Jonathan R.; Denslow, Kayte M.; Morra, Marino; Knopik, Clint D.; Severtsen, Ronald H. et al.
Object Type: Report
System: The UNT Digital Library
CO{sub 2} Sequestration Potential of Charqueadas Coal Field in Brazil (open access)

CO{sub 2} Sequestration Potential of Charqueadas Coal Field in Brazil

The I2B coal seam in the Charqueadas coal field has been evaluated as a target for enhanced coal bed methane production and CO{sub 2} sequestration. The samples were low rank coals (high volatile bituminous and sub-bituminous) obtained from the I2B seam as �3� cores. Such properties as sorption capacity, internal structure of the samples, porosity and permeability were of primary interest in this characterization study.
Date: October 23, 2012
Creator: Romanov, V.
Object Type: Article
System: The UNT Digital Library
Conceptual Design Parameters for MITR LEU-MO Fuel Conversion Demonstration Experimental Irradiations (open access)

Conceptual Design Parameters for MITR LEU-MO Fuel Conversion Demonstration Experimental Irradiations

None
Date: October 23, 2012
Creator: Wilson, E. H.; Newton, T. H., Jr.; Hu, L.; Dunn, F. E. & Stevens, J. G.
Object Type: Report
System: The UNT Digital Library
Conformal growth of Mo/Si multilayers on grating substrates using collimated ion beam sputtering (open access)

Conformal growth of Mo/Si multilayers on grating substrates using collimated ion beam sputtering

Deposition of multilayers on saw-tooth substrates is a key step in the fabrication of multilayer blazed gratings (MBG) for extreme ultraviolet and soft x-rays. Growth of the multilayers can be perturbed by shadowing effects caused by the highly corrugated surface of the substrates, which results in distortion of the multilayer stack structure and degradation of performance of MBGs. To minimize the shadowing effects we used an ionbeam sputtering machine with a highly collimated atomic flux to deposit Mo/Si multilayers on saw-tooth substrates. The sputtering conditions were optimized by finding a balance between smoothening and roughening processes in order to minimize degradation of the groove profile in the course of deposition and at the same time to keep the interfaces of a multilayer stack smooth enough for high efficiency. An optimal value of energy of 200 eV for sputtering Kr{sup +} ions was found by deposition of test multilayers on flat substrates at a range of ion energies. Two saw-tooth substrates were deposited at energies of 200 eV and 700 eV for the sputtering ions. It was found that reduction of the ion energy improved the blazing performance of the MBG and resulted in a 40% gain in the diffraction efficiency …
Date: January 23, 2012
Creator: Gawlitza, Peter; Cambie, Rossana; Dhuey, Scott; Gullikson, Eric; Warwick, Tony; Braun, Stefan et al.
Object Type: Article
System: The UNT Digital Library
Deciphering the details of RNA aminoglycoside interactions: from atomistic models to biotechnological applications (open access)

Deciphering the details of RNA aminoglycoside interactions: from atomistic models to biotechnological applications

A detailed study was done of the neomycin-B RNA aptamer for determining its selectivity and binding ability to both neomycin– and kanamycin-class aminoglycosides. A novel method to increase drug concentrations in cells for more efficiently killing is described. To test the method, a bacterial model system was adopted and several small RNA molecules interacting with aminoglycosides were cloned downstream of T7 RNA polymerase promoter in an expression vector. Then, the growth analysis of E. coli expressing aptamers was observed for 12-hour period. Our analysis indicated that aptamers helped to increase the intracellular concentration of aminoglycosides thereby increasing their efficacy.
Date: July 23, 2012
Creator: Ilgu, Muslum
Object Type: Thesis or Dissertation
System: The UNT Digital Library
DEPOSITION VELOCITY ESTIMATION WITH THE GENII V2 SOFTWARE (open access)

DEPOSITION VELOCITY ESTIMATION WITH THE GENII V2 SOFTWARE

In 2010, the Department of Energy (DOE) Chief of Nuclear Safety and Office of Health, Safety and Security (HSS), with the support of industry experts in atmospheric sciences and accident dose consequences analysis, performed detailed analyses of the basis for the dry deposition velocity (DV) values used in the MACCS2 computer code. As a result of these analyses, DOE concluded that the historically used default DV values of 1 centimeter/second (cm/s) for unfiltered/unmitigated releases and 0.1 cm/s for filtered/mitigated releases may not be reasonably conservative for all DOE sites and accident scenarios. HSS recently issued Safety Bulletin 2011-02, Accident Analysis Parameter Update, recommending the use of the newly developed default DV, 0.1 cm/s for an unmitigated/unfiltered release. Alternatively site specific DV values can be developed using GENII version 2 (GENII v2) computer code. Key input parameters for calculating DV values include surface roughness, maximum wind speed for calm, particle size, particle density and meteorological data (wind speed and stability class). This paper will include reasonably conservative inputs, and a truncated parametric study. In lieu of the highly-conservative recommended DV value (0.1cm/s) for unmitigated/unfiltered release, GENII v2 has been used to justify estimated 95th percentile DV values. Also presented here are …
Date: April 23, 2012
Creator: Hutchins, H.
Object Type: Article
System: The UNT Digital Library
Design and Construction of Prototype Dark Matter Detectors (open access)

Design and Construction of Prototype Dark Matter Detectors

The Lepton Quark Studies (LQS) group is engaged in searching for dark matter using the Dark Matter Time Projection Chamber (DMTPC) at the Waste Isolation Pilot Plant (WIPP) (Carlsbad, NM). DMTPC is a direction-sensitive dark matter detector designed to measure the recoil direction and energy deposited by fluorine nuclei recoiling from the interaction with incident WIMPs. In the past year, the major areas of progress have been: #15; to publish the #12;first dark matter search results from a surface run of the DMTPC prototype detector, #15; to build and install the 10L prototype in the underground laboratory at WIPP which will house the 1 m{sup 3} detector, and #15; to demonstrate charge and PMT readout of the TPC using prototype detectors, which allow triggering and #1;{Delta}z measurement to be used in the 1 m{sup 3} detector under development.
Date: March 23, 2012
Creator: Fisher, Peter
Object Type: Report
System: The UNT Digital Library
Detecting and monitoring UCG subsidence with InSAR (open access)

Detecting and monitoring UCG subsidence with InSAR

The use of interferometric synthetic aperture radar (InSAR) to measure surface subsidence caused by Underground Coal Gasification (UCG) is tested. InSAR is a remote sensing technique that uses Synthetic Aperture Radar images to make spatial images of surface deformation and may be deployed from satellite or an airplane. With current commercial satellite data, the technique works best in areas with little vegetation or farming activity. UCG subsidence is generally caused by roof collapse, which adversely affects UCG operations due to gas loss and is therefore important to monitor. Previous studies have demonstrated the usefulness of InSAR in measuring surface subsidence related to coal mining and surface deformation caused by a coal mining roof collapse in Crandall Canyon, Utah is imaged as a proof-of-concept. InSAR data is collected and processed over three known UCG operations including two pilot plants (Majuba, South Africa and Wulanchabu, China) and an operational plant (Angren, Uzbekistan). A clear f eature showing approximately 7 cm of subsidence is observed in the UCG field in Angren. Subsidence is not observed in the other two areas, which produce from deeper coal seams and processed a smaller volume. The results show that in some cases, InSAR is a useful tool …
Date: March 23, 2012
Creator: Mellors, R J; Foxall, W & Yang, X
Object Type: Report
System: The UNT Digital Library
Detection and Attribution of Regional Climate Change with a Focus on the Precursors of Droughts - Final LDRD Report (open access)

Detection and Attribution of Regional Climate Change with a Focus on the Precursors of Droughts - Final LDRD Report

None
Date: November 23, 2012
Creator: Bonfils, C.
Object Type: Report
System: The UNT Digital Library
Development of a lithium-glass based composite neutron detector for He replacement (open access)

Development of a lithium-glass based composite neutron detector for He replacement

None
Date: July 23, 2012
Creator: Rich, G C; Kazkaz, K & Karwowski, H J
Object Type: Report
System: The UNT Digital Library
DEVELOPMENT OF HTS CONDUCTORS FOR ELECTRIC POWER APPLICATIONS (open access)

DEVELOPMENT OF HTS CONDUCTORS FOR ELECTRIC POWER APPLICATIONS

Second generation (2G) technologies to fabricate high-performance superconducting wires developed at the Oak Ridge National Laboratory (ORNL) were transferred to American Superconductor via this CRADA. In addition, co-development of technologies for over a decade was done to enable fabrication of commercial high-temperature superconducting (HTS) wires with high performance. The massive success of this CRADA has allowed American Superconductor Corporation (AMSC) to become a global leader in the fabrication of HTS wire and the technology is fully based on the Rolling Assisted Biaxially Textured Substrates (RABiTS) technology invented and developed at ORNL.
Date: October 23, 2012
Creator: Goyal, A. & Rupich, M. (American Superconductor Corp.)
Object Type: Report
System: The UNT Digital Library
Distinguishing Plutonium Metal from Plutonium Oxide Using Fast Neutrons, Preliminary Experimental Results (open access)

Distinguishing Plutonium Metal from Plutonium Oxide Using Fast Neutrons, Preliminary Experimental Results

None
Date: October 23, 2012
Creator: Verbeke, J M & Chapline, G F
Object Type: Report
System: The UNT Digital Library
EFFECT OF CHLORIDE AND SULFATE CONCENTRATION ON PROBABLITY BASED CORROSION CONTROL FOR LIQUID WASTE TANKS- PART IV (open access)

EFFECT OF CHLORIDE AND SULFATE CONCENTRATION ON PROBABLITY BASED CORROSION CONTROL FOR LIQUID WASTE TANKS- PART IV

A series of cyclic potentiodynamic polarization tests was performed on samples of A537 carbon steel in support of a probability-based approach to evaluate the effect of chloride and sulfate on corrosion susceptibility. Testing solutions were chosen to build off previous experimental results from FY07, FY08, FY09 and FY10 to systemically evaluate the influence of the secondary aggressive species, chloride, and sulfate. The FY11 results suggest that evaluating the combined effect of all aggressive species, nitrate, chloride, and sulfate, provides a consistent response for determining corrosion susceptibility. The results of this work emphasize the importance for not only nitrate concentration limits, but also chloride and sulfate concentration limits as well.
Date: August 23, 2012
Creator: Hoffman, E.
Object Type: Report
System: The UNT Digital Library
Experimental Study of Parametric Dependence of Electron-scale Turbulence in a Spherical Tokamak (open access)

Experimental Study of Parametric Dependence of Electron-scale Turbulence in a Spherical Tokamak

Electron-scale turbulence is predicted to drive anomalous electron thermal transport. However, experimental study of its relation with transport is still in its early stage. On the National Spherical Tokamak eXperiment (NSTX), electron-scale density fluctuations are studied with a novel tangen- tial microwave scattering system with high radial resolution of ±2 cm. Here, we report a study of parametric dependence of electron-scale turbulence in NSTX H-mode plasmas. The dependence on density gradient is studied through the observation of a large density gradient variation in the core induced by an ELM event, where we found the first clear experimental evidence of density gradient stabilization of electron-gyro scale turbulence in a fusion plasma. This observation, cou- pled with linear gyro-kinetic calculations, leads to the identification of the observed instability as toroidal Electron Temperature Gradient (ETG) modes. It is observed that longer wavelength ETG modes, k⊥ρs < 10 (ρs is the ion gyroradius at electron temperature and k⊥ is the wavenumber perpendicular to local equilibrium magnetic field), are most stabilized by density gradient, and the stabilization is accompanied by about a factor of two decrease in electron thermal diffusivity. Comparisons with nonlinear ETG gyrokinetic simulations shows ETG turbulence may be able to explain the …
Date: May 23, 2012
Creator: Ren, Y.; Kaye, S. M.; Mazzucato, E.; Bell, R. E.; Diallo, A.; Domier, C. W. et al.
Object Type: Report
System: The UNT Digital Library
Final Report Theoretical Studies of Surface Reactions on Metals and Electronic Materials (open access)

Final Report Theoretical Studies of Surface Reactions on Metals and Electronic Materials

This proposal describes the proposed renewal of a theoretical research program on the structure and reactivity of molecules adsorbed on transition metal surfaces. A new direction of the work extends investigations to interfaces between solid surfaces, adsorbates and aqueous solutions and includes fundamental work on photoinduced electron transport into chemisorbed species and into solution. The goal is to discover practical ways to reduce water to hydrogen and oxygen using radiation comparable to that available in the solar spectrum. The work relates to two broad subject areas: photocatalytic processes and production of hydrogen from water. The objective is to obtain high quality solutions of the electronic structure of adsorbate-metal-surface-solution systems so as to allow activation barriers to be calculated and reaction mechanisms to be determined. An ab initio embedding formalism provides a route to the required accuracy. New theoretical methods developed during the previous grant period will be implemented in order to solve the large systems involved in this work. Included is the formulation of a correlation operator that is used to treat localized electron distributions such as ionic or regionally localized distributions. The correlation operator which is expressed as a two-particle projector is used in conjunction with configuration interaction.
Date: April 23, 2012
Creator: Whitten, Jerry L.
Object Type: Report
System: The UNT Digital Library
Fusion Nuclear Science Pathways Assessment (open access)

Fusion Nuclear Science Pathways Assessment

With the strong commitment of the US to the success of the ITER burning plasma mission, and the project overall, it is prudent to consider how to take the most advantage of this investment. The production of energy from fusion has been a long sought goal, and the subject of several programmatic investigations and time line proposals [1]. The nuclear aspects of fusion research have largely been avoided experimentally for practical reasons, resulting in a strong emphasis on plasma science. Meanwhile, ITER has brought into focus how the interface between the plasma and engineering/technology, presents the most challenging problems for design. In fact, this situation is becoming the rule and no longer the exception. ITER will demonstrate the deposition of 0.5 GW of neutron heating to the blanket, deliver a heat load of 10-20 MW/m2 or more on the divertor, inject 50-100 MW of heating power to the plasma, all at the expected size scale of a power plant. However, in spite of this, and a number of other technologies relevant power plant, ITER will provide a low neutron exposure compared to the levels expected to a fusion power plant, and will purchase its tritium entirely from world reserves accumulated …
Date: February 23, 2012
Creator: C.E. Kessel, et. al.
Object Type: Report
System: The UNT Digital Library