Draft Genome Sequence of the Cyanotroph Pseudomonas monteilii BCN3 (open access)

Draft Genome Sequence of the Cyanotroph Pseudomonas monteilii BCN3

This article reports the first draft genome of Pseudomonas monteilii BCN3, a cyanotroph isolated from sewage sludge.
Date: January 3, 2019
Creator: Jones, Lauren B. & Kunz, Daniel A.
System: The UNT Digital Library
Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network (open access)

Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network

This article proposes that a plant's ability to engage in many different metabolic and molecular networks as well as alter stomatal aperture in order to adapt to their environment is mediated through pulses of gene expression that are coordinated throughout the plant in a systemic manner by the ROS/Ca+2 waves.
Date: January 2019
Creator: Kollist, Hannes; Zandalinas, Sara I.; Sengupta, Soham; Nuhkat, Maris; Kangasjärvi, Jaakko & Mittler, Ron
System: The UNT Digital Library
Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse (open access)

Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse

This article tested the cross-species application of the Affymetrix 600K Chicken SNP array in five species of North American prairie grouse (Centrocercus and Tympanuchus genera). This study study provided evidence for successful cross-species application of the chicken SNP array in grouse which diverged ca. 37 mya from the chicken lineage. As far as the authors are concerned, this is the first reported application of a SNP array in non-passerine birds, and it demonstrates the feasibility of using commercial SNP arrays in research on non-model bird species.
Date: October 19, 2018
Creator: Minias, Piotr; Dunn, Peter O.; Whittingham, Linda A.; Johnson, Jeff A. & Oyler-McCance, Sara
System: The UNT Digital Library
Corrigendum: The Differences Between Malate Dehydrogenase Malic Enzymes and Nicotinamide Adenine Dinucleotide Phosphate Malic Enzymes Subtypes of C₄ Photosynthesis: More Than Decarboxylating Enzymes (open access)

Corrigendum: The Differences Between Malate Dehydrogenase Malic Enzymes and Nicotinamide Adenine Dinucleotide Phosphate Malic Enzymes Subtypes of C₄ Photosynthesis: More Than Decarboxylating Enzymes

This is a correction of a previously released article. A mistake was found in Figure 2 of the published work. The names of the cell types, “mesophyll cell” and “bundle sheath” were erroneously interchanged.
Date: March 8, 2019
Creator: Rao, Xiaolan & Dixon, R. A.
System: The UNT Digital Library
Targeting the pattern-triggered immunity pathway to enhance resistance to Fusarium graminearum (open access)

Targeting the pattern-triggered immunity pathway to enhance resistance to Fusarium graminearum

Article describes study which shows that resistance against fusarium graminearum, the primary casual agent of fusarium head blight (FHB), can be enhanced by flg22, a bacterial microbe-associated molecular pattern (MAMP).
Date: February 6, 2019
Creator: Sarowar, Sujon; Alam, Syeda T.; Makandar, Ragiba; Lee, Hyeonju; Trick, Harold N.; Dong, Yanhong et al.
System: The UNT Digital Library
One thousand plant transcriptomes and the phylogenomics of green plants (open access)

One thousand plant transcriptomes and the phylogenomics of green plants

Article describes the results of the One Thousand Plant Transcriptomes Initiative's efforts to sequence the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta).
Date: October 23, 2019
Creator: One Thousand Plant Transcriptomes Initiative
System: The UNT Digital Library
Lignin biosynthesis: old roads revisited and new roads explored (open access)

Lignin biosynthesis: old roads revisited and new roads explored

Article presents several hypothetical models to illustrate information about lignin and the lignification process in plants.
Date: December 4, 2019
Creator: Dixon, R. A. & Barros, Jaime
System: The UNT Digital Library
Retinal oxygen supply shaped the functional evolution of the vertebrate eye (open access)

Retinal oxygen supply shaped the functional evolution of the vertebrate eye

Article explores the hypothesis that oxygen diffusion limited the evolution of retinal morphology by reconstructing the evolution of retinal thickness and the various mechanisms for retinal oxygen supply, including capillarization and acid-induced haemoglobin oxygen unloading.
Date: December 10, 2019
Creator: Damsgaard, Christian; Lauridsen, Henrik; Funder, Anette MD; Thomsen, Jesper S.; Desvignes, Thomas; Crossley, Dane A., II et al.
System: The UNT Digital Library
Mahi‐mahi (Coryphaena hippurus ) life development: morphological, physiological, behavioral and molecular phenotypes (open access)

Mahi‐mahi (Coryphaena hippurus ) life development: morphological, physiological, behavioral and molecular phenotypes

Article relates a study describing the development of cultured mahi‐mahi from the zygote stage to adult.
Date: March 18, 2019
Creator: Perrichon, Prescilla; Stieglitz, John D.; Xu, Elvis Genbo; Magnuson, Jason T.; Pasparakis, Christina; Mager, Edward M. et al.
System: The UNT Digital Library
An Efficient Synthesis of Deoxyrhapontigenin-3-O-β-d-glucuronide, a Brain-Targeted Derivative of Dietary Resveratrol, and Its Precursor 4′-O-Me-Resveratrol (open access)

An Efficient Synthesis of Deoxyrhapontigenin-3-O-β-d-glucuronide, a Brain-Targeted Derivative of Dietary Resveratrol, and Its Precursor 4′-O-Me-Resveratrol

Article discusses the identification of the brain-available phenol glucuronide metabolite deoxyrhapontigenin-3-O-β-d-glucuronide (5) in perfused rat brains following subacute treatment with the stilbene resveratrol.
Date: May 7, 2019
Creator: de Fátima, Ângelo; Docampo-Palacios, Maite; Alvarez-Hernandez, Anislay; Pasinetti, Giulio M. & Dixon, R. A.
System: The UNT Digital Library
Improved Campephiline detection: An experiment conducted with the Magellanic Woodpecker (open access)

Improved Campephiline detection: An experiment conducted with the Magellanic Woodpecker

Article describes a study which tried to determine which of three methods (useing a drumming device to simulate a double‐knock (i.e., territorial acoustical signal), broadcasting a territorial call, or passively listening) best results in a detection of Magellanic Woodpeckers (Campephilus magellanicus ), and if weather variables influence detection probability.
Date: September 27, 2019
Creator: Wynia, Amy L.; Rolland, Virginie & Jiménez, Jaime E.
System: The UNT Digital Library
IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands (open access)

IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands

Article discusses IslandCafe, a proposed method for genomic island detection.
Date: October 1, 2019
Creator: Jani, Mehul & Azad, Rajeev K.
System: The UNT Digital Library
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence (open access)

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

Article describes study which searched for genes with putatively unknown roles in regulating cell wall biosynthesis using an extended network-based Lines of Evidence (LOE) pipeline to combine multiple omics data sets in P. trichocarpa, including gene coexpression, gene comethylation, population level pairwise SNP correlations, and two distinct SNP-metabolite Genome Wide Association Study (GWAS) layers.
Date: October 8, 2019
Creator: Furches, Anna; Kainer, David; Weighill, Deborah; Large, Annabel; Jones, Piet; Walker, Angelica M. et al.
System: The UNT Digital Library
Altered expression of ionotropic L-Glutamate receptors in aged sensory neurons of Aplysia californica (open access)

Altered expression of ionotropic L-Glutamate receptors in aged sensory neurons of Aplysia californica

Article describes study in which mRNA expression of iGluR was quantified in two sensory neuron clusters of two cohorts of Aplysia californica (Aplysia) at both sexual maturity (~8 months) and advanced age (~12 months) in order to examine if changes in ionotropic L-Glu receptor (iGluR) transcription underlie reduced physiology8
Date: May 23, 2019
Creator: Greer, Justin B.; Mager, Edward M. & Fieber, Lynne A.
System: The UNT Digital Library
Hypoxia-induced reprogramming of the cardiac phenotype in American alligators (Alligator mississippiensis) revealed by quantitative proteomics (open access)

Hypoxia-induced reprogramming of the cardiac phenotype in American alligators (Alligator mississippiensis) revealed by quantitative proteomics

Article describes study which tested if targeted and persistent changes in steady-state protein expression underlie this hypoxic heart phenotype, using isobaric tags for relative and absolute quantitation (iTRAQ) proteomics.
Date: June 13, 2019
Creator: Alderman, Sarah L.; Crossley, Dane A., II; Elsey, Ruth M. & Gillis, Todd E.
System: The UNT Digital Library
Nature-Guided Synthesis of Advanced Bio-Lubricants (open access)

Nature-Guided Synthesis of Advanced Bio-Lubricants

Article describes study which finds that Orychophragmus violaceus (Ov) seed oil has superior lubrication properties, based on the unusual structural features of the major lipid species—triacylglycerol (TAG) estolides.
Date: August 12, 2019
Creator: Romsdahl, Trevor; Shirani, Asghar; Minto, Robert E.; Zhang, Chunyu; Cahoon, Edgar B.; Chapman, Kent Dean et al.
System: The UNT Digital Library
Developmental plasticity of cardiac anoxia-tolerance in juvenile common snapping turtles ( Chelydra serpentina) (open access)

Developmental plasticity of cardiac anoxia-tolerance in juvenile common snapping turtles ( Chelydra serpentina)

Article describes study which tested the hypothesis that developmental hypoxia alters cardiomyocyte physiology in a manner that protects the heart from hypoxic stress.
Date: June 6, 2019
Creator: Ruhr, Ilan M.; McCourty, Heather; Bajjig, Afaf; Crossley, Dane A., II; Shiels, Holly A. & Galli, Gina L. J.
System: The UNT Digital Library
4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase (open access)

4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase

Article describes an enzyme catalyzing the direct 3-hydroxylation of 4-coumarate to caffeate in lignin biosynthesis as a bifunctional peroxidase that oxidizes both ascorbate and 4-coumarate at comparable rates.
Date: April 30, 2019
Creator: Barros, Jaime; Escamilla-Treviño, Luis; Song, Luhua; Rao, Xiaolan; Serrani-Yarce, Juan Carlos; Docampo-Palacios, Maite et al.
System: The UNT Digital Library
Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana (open access)

Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana

Article describes study in which fpgs1ccoaomt1 double mutants were generated and functionally characterized in order to test if lignin content can be further reduced by combining genetic mutations in C1 metabolism and the lignin biosynthetic pathway.
Date: May 3, 2019
Creator: Xie, Hongli; Engle, Nancy L.; Venketachalam, Sivasankari; Yoo, Chang Geun; Barros, Jaime; Lecoultre, Mitch et al.
System: The UNT Digital Library
Correction to: Multiple levers for overcoming the recalcitrance of lignocellulosic biomass (open access)

Correction to: Multiple levers for overcoming the recalcitrance of lignocellulosic biomass

Correction to the previously published article "Multiple levers for overcoming the recalcitrance of lignocellulosic biomass".
Date: February 9, 2019
Creator: Holwerda, Evert; Worthen, Robert; Kothari, Ninad; Lasky, Ronald; Davison, Brian H. (Brian Henry), 1957-; Fu, Chunxiang et al.
System: The UNT Digital Library
p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas (open access)

p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas

Article identifies exceptional glucose reliance among squamous cell carcinomas (SCC)s dictated by hyperactive GLUT1-mediated glucose influx.
Date: August 13, 2019
Creator: Hsieh, Meng-Hsiung; Choe, Joshua H.; Gadhvi, Jashkaran; Kim, Yoon Jung; Arguez, Marcus A.; Palmer, Madison et al.
System: The UNT Digital Library
Simultaneous electrophysiological and morphological assessment of functional damage to neural networks in vitro after 30–300 g impacts (open access)

Simultaneous electrophysiological and morphological assessment of functional damage to neural networks in vitro after 30–300 g impacts

Article describes studying aiming to investigate and quantify network activity changes after simulated concussions in vitro and therewith develop a platform for simultaneous and direct observations of morphological and electrophysiological changes in neural networks.
Date: October 18, 2019
Creator: Rogers, Edmond A. & Gross, Guenter W.
System: The UNT Digital Library
Sarcoplasmic reticulum Ca²⁺-ATPase (SERCA) activity during the transition to endothermy in an altricial bird (open access)

Sarcoplasmic reticulum Ca²⁺-ATPase (SERCA) activity during the transition to endothermy in an altricial bird

Article describes SERCA activity in the pectoralis muscle and heart ventricle of red-winged blackbird (Agelaius phoeniceus) nestlings, fledglings and adults. Additionally, using a diet manipulation, the authors tested the hypothesis that muscle SERCA activity is affected by dietary fatty acid composition, as has been shown in some previous studies.
Date: June 28, 2019
Creator: Price, Edwin R.; Sirsat, Tushar S.; Sirsat, Sarah K. G. & Dzialowski, Edward M. (Edward Michael)
System: The UNT Digital Library
Altitudinal gradients in Magellanic sub-Antarctic lagoons: the effect of elevation on freshwater macroinvertebrate diversity and distribution (open access)

Altitudinal gradients in Magellanic sub-Antarctic lagoons: the effect of elevation on freshwater macroinvertebrate diversity and distribution

In this article, freshwater macroinvertebrate diversity associated with lakes and ponds along the altitudinal gradient of a Magellanic sub-Antarctic watershed are assessed. A monotonic decline in species richness was observed with increasing elevation, with simpler and more even community composition at higher altitude. This pattern differs from the mid-peak trend found in streams of the same watershed. Functional feeding group structure also diminished with increasing elevation.
Date: July 29, 2019
Creator: Rendoll Cárcamo, Javier; Contador, Tamara; Gañán, Melisa; Pérez Troncoso, Carolina; Maldonado Márquez, Alan; Convey, Peter et al.
System: The UNT Digital Library