Article discussing intraocular pressure changes and an important determinant of the biocompatibility of intravitreous implants.

In the history of astronomy, major advances in our understanding of the Universe have come from dramatic improvements in our ability to accurately measure astronomical quantities. Aided by rapid progress in information technology, current sky surveys are changing the way we view and study the Universe. Next-generation surveys will maintain this revolutionary progress. We focus here on the most ambitious survey currently planned in the visible band, the Large Synoptic Survey Telescope (LSST). LSST will have unique survey capability in the faint time domain. The LSST design is driven by four main science themes: constraining dark energy and dark matter, taking an inventory of the Solar System, exploring the transient optical sky, and mapping the Milky Way. It will be a large, wide-field ground-based system designed to obtain multiple images covering the sky that is visible from Cerro Pachon in Northern Chile. The current baseline design, with an 8.4 m (6.5 m effective) primary mirror, a 9.6 deg{sup 2} field of view, and a 3,200 Megapixel camera, will allow about 10,000 square degrees of sky to be covered using pairs of 15-second exposures in two photometric bands every three nights on average. The system is designed to yield high image …

Cells use feedback to implement a diverse range of regulatory functions. Building synthetic feedback control systems may yield insight into the roles that feedback can play in regulation since it can be introduced independently of native regulation, and alternative control architectures can be compared. We propose a model for microbial biofuel production where a synthetic control system is used to increase cell viability and biofuel yields. Although microbes can be engineered to produce biofuels, the fuels are often toxic to cell growth, creating a negative feedback loop that limits biofuel production. These toxic effects may be mitigated by expressing efflux pumps that export biofuel from the cell. We developed a model for cell growth and biofuel production and used it to compare several genetic control strategies for their ability to improve biofuel yields. We show that controlling efflux pump expression directly with a biofuel-responsive promoter is a straight forward way of improving biofuel production. In addition, a feed forward loop controller is shown to be versatile at dealing with uncertainty in biofuel production rates.

Interest in capturing the energy of the sun is rising as demands for renewable energy sources increase. One area of developing research is the use of concentrating solar power (CSP), where the solar energy is concentrated by using mirrors to direct the sunlight towards a collector filled with a heat transfer fluid (HTF). The HTF transfers the collected energy into pressurized steam, which is used to generate energy. The greater the energy collected by the HTF, the more efficent the electrical energy production is, thus the overall efficiency is controlled by the thermal fluid. Commercial HTFs such as Therminol{reg_sign} (VP-1), which is a blend of biphenyl and diphenyl oxide, have a significant vapor pressure, especially at elevated temperatures. In order for these volatile compounds to be used in CSP systems, the system either has to be engineered to prevent the phase change (i.e., volatilization and condensation) through pressurization of the system, or operate across the phase change. Over thirty years ago, a class of low-melting organic compounds were developed with negligible vapor pressure. These compounds are referred to as ionic liquids (ILs), which are organic-based compounds with discrete charges that cause a significant decrease in their vapor pressure. As a …

This paper describes the mechanical design of the primary mirror that images the visible portion of the synchrotron radiation (SR) extracted from the High Energy Ring (HER) of the PEP-II B-Factory. During off-axis operation, the water-cooled GlidCop mirror is subjected to a heat flux in excess of 2000 W/cm2. When on-axis imaging occurs, the heat flux due to scattered SR, resistive wall losses and Higher-Order-Mode (HOM) heating is estimated at 1 W/cm2. The imaging surface is plated with Electroless Nickel to improve its optical characteristics. The design requirements for the primary mirror are listed and discussed. Calculated mechanical distortions and stresses experienced by the mirror during on-axis and off-axis operation will be presented.

Surplus plutonium bearing materials in the U.S. Department of Energy (DOE) complex are stored in the 3013 containers that are designed to meet the requirements of the DOE standard DOE-STD-3013. The 3013 containers are in turn packaged inside 9975 packages that are designed to meet the NRC 10 CFR Part 71 regulatory requirements for transporting the Type B fissile materials across the DOE complex. The design requirements for the hypothetical accident conditions (HAC) involving a fire are given in 10 CFR 71.73. The 9975 packages are stored at the DOE Savannah River Site in the K-Area Material Storage (KAMS) facility for long term of up to 50 years. The design requirements for safe storage in KAMS facility containing multiple sources of combustible materials are far more challenging than the HAC requirements in 10 CFR 71.73. While the 10 CFR 71.73 postulates an HAC fire of 1475 F and 30 minutes duration, the facility fire calls for a fire of 1500 F and 86 duration. This paper describes a methodology and the analysis results that meet the design limits of the 9975 component and demonstrate the robustness of the 9975 package.

The EP-61 primary containment vessel of the 5320 shipping package has been used for storage and transportation of Pu-238 plutonium oxide heat source material. For storage, the material in its convenience canister called EP-60 is placed in the EP-61 and sealed by two threaded caps with elastomer O-ring seals. When the package is shipped, the outer cap is seal welded to the body. While stored, the EP-61s are placed in a cooling water bath. In preparation for welding, several containers are removed from storage and staged to the welding booth. The significant heat generation of the contents, and resulting rapid rise in component temperature necessitates special handling practices. The test described here was performed to determine the temperature rise with time and peak temperature attained for an EP-61 with 203 watts of internal heat generation, upon its removal from the cooling water bath.

We describe a low-temperature sample probe for the electrical detection of magnetic resonance in a resonant W-band (94 GHz) microwave cavity. The advantages of this approach are demonstrated by experiments on silicon field-effect transistors. A comparison with conventional low-frequency measurements at X-band (9.7 GHz) on the same devices reveals an up to 100-fold enhancement of the signal intensity. In addition, resonance lines that are unresolved at X-band are clearly separated in the W-band measurements. Electrically detected magnetic resonance at high magnetic fields and high microwave frequencies is therefore a very sensitive technique for studying electron spins with an enhanced spectral resolution and sensitivity.

Precise electronic structure calculations of ions in plasmas benefit from optimized numerical radial meshes. A new closed form expression for obtaining non-linear parameters for the efficient generation of analytic log-linear radial meshes is presented. In conjunction with the (very simple) algorithm for the rapid high precision evaluation of Lambert's W-function, the above identity allows the precise construction of generalized log-linear radial meshes adapted to various constraints.

Network structures, such as social networks, web graphs and networks from systems biology, play important roles in many areas of science and our everyday lives. In order to study the networks one needs to first collect reliable large scale network data. While the social and information networks have become ubiquitous, the challenge of collecting complete network data still persists. Many times the collected network data is incomplete with nodes and edges missing. Commonly, only a part of the network can be observed and we would like to infer the unobserved part of the network. We address this issue by studying the Network Completion Problem: Given a network with missing nodes and edges, can we complete the missing part? We cast the problem in the Expectation Maximization (EM) framework where we use the observed part of the network to fit a model of network structure, and then we estimate the missing part of the network using the model, re-estimate the parameters and so on. We combine the EM with the Kronecker graphs model and design a scalable Metropolized Gibbs sampling approach that allows for the estimation of the model parameters as well as the inference about missing nodes and edges of …

Oxy-fuel fireside research goals are: (1) determine the effect of oxyfuel combustion on fireside corrosion - flue gas recycle choice, staged combustion ramifications; and (2) develop methods to use chromia solubility in ash as an ash corrosivity measurement - synthetic ashes at first, then boiler and burner rig ashes.

Since 2003, MicrobesOnline (http://www.microbesonline.org) has been providing a community resource for comparative and functional genome analysis. The portal includes over 1000 complete genomes of bacteria, archaea and fungi and thousands of expression microarrays from diverse organisms ranging from model organisms such as Escherichia coli and Saccharomyces cerevisiae to environmental microbes such as Desulfovibrio vulgaris and Shewanella oneidensis. To assist in annotating genes and in reconstructing their evolutionary history, MicrobesOnline includes a comparative genome browser based on phylogenetic trees for every gene family as well as a species tree. To identify co-regulated genes, MicrobesOnline can search for genes based on their expression profile, and provides tools for identifying regulatory motifs and seeing if they are conserved. MicrobesOnline also includes fast phylogenetic profile searches, comparative views of metabolic pathways, operon predictions, a workbench for sequence analysis and integration with RegTransBase and other microbial genome resources. The next update of MicrobesOnline will contain significant new functionality, including comparative analysis of metagenomic sequence data. Programmatic access to the database, along with source code and documentation, is available at http://microbesonline.org/programmers.html.

Bob Siemann came to SLAC from Cornell in 1991. With the support from Burton Richter, then Director of SLAC, he took on a leadership role to formulate an academic program in accelerator physics at SLAC and the development of its accelerator faculty. Throughout his career he championed accelerator physics as an independent academic discipline, a vision that he fought so hard for and never retreated from. He convinced Stanford University and SLAC to create a line of tenured accelerator physics faculty and over the years he also regularly taught classes at Stanford and the U.S. Particle Accelerator School. After the shutdown of the SSC Laboratory, I returned to SLAC in 1993 to join the accelerator faculty he was forming. He had always visualized a need to have a professional academic journal for the accelerator field, and played a pivotal role in creating the journal Physical Review Special Topics - Accelerators and Beams, now the community standard for accelerator physics after nine years of his editorship. Today, Bob's legacy of accelerator physics as an independent academic discipline continues at SLAC as well as in the community, from which we all benefit. Bob was a great experimentalist. He specialized in experimental techniques …

The Linac Coherent Light Source is an x-ray free-electron laser at the SLAC National Accelerator Laboratory, which is operating at x-ray wavelengths of 20-1.2 Angstrom with peak brightness nearly ten orders of magnitude beyond conventional synchrotron radiation sources. At the low charge operation mode (20 pC), the x-ray pulse length can be <10 fs. In this paper we report our numerical optimization and simulations to produce even shorter x-ray pulses by optimizing the machine and undulator setup at 20 pC charge. In the soft x-ray regime, with combination of slotted-foil or undulator taper, a single spike x-ray pulse is achievable with peak FEL power of a few 10s GW. Linac Coherent Light Source (LCLS), the world's first hard x-ray Free electron laser (FEL), has started operation since 2009. With nominal operation charge of 250 pC, the generated x-ray pulse length is from 70 fs to a few hundred fs. This marks the beginning of a new era of ultrashort x-ray sciences. In addition, a low charge (20pC) operation mode has also been established. Since the collective effects are reduced at the low charge mode, we can increase the compression factor and still achieve a few kA peak current. The expected …

The event-by-event fission model FREYA is extended to spontaneous fission of actinides and a variety of neutron observables are studied for spontaneous fission and fission induced by thermal neutrons with a view towards possible applications for SNM detection. We have shown that event-by-event models of fission, such as FREYA, provide a powerful tool for studying fission neutron correlations. Our results demonstrate that these correlations are significant and exhibit a dependence on the fissioning nucleus. Since our method is phenomenological in nature, good input data are especially important. Some of the measurements employed in FREYA are rather old and statistics limited. It would be useful to repeat some of these studies with modern detector techniques. In addition, most experiments made to date have not made simultaneous measurements of the fission products and the prompt observables, such as neutron and photons. Such data, while obviously more challenging to obtain, would be valuable for achieving a more complete understanding of the fission process.

We propose to generate steady-state microbunching in a storage ring with a reversible seeding scheme. High gain harmonic generation (HGHG) and echo-enabled harmonic generation (EEHG) are two promising methods for microbunching linac electron beams. Because both schemes increase the energy spread of the seeded beam, they cannot drive a coherent radiator turn-by-turn in a storage ring. However, reversing the seeding process following the radiator minimizes the impact on the electron beam and may allow coherent radiation at or near the storage ring repetition rate. In this paper we describe the general idea and outline a proof-of-principle experiment. Electron storage rings can drive high average power light sources, and free-electron lasers (FELs) are now producing coherent light sources of unprecedented peak brightness While there is active research towards high repetition rate FELs (for example, using energy recovery linacs), at present there are still no convenient accelerator-based sources of high repetition rate, coherent radiation. As an alternative avenue, we recently proposed to establish steady-state microbunching (SSMB) in a storage ring. By maintaining steady-state coherent microbunching at one point in the storage ring, the beam generates coherent radiation at or close to the repetition rate of the storage ring. In this paper, we …

Robert H. Siemann originally conceived of the Advanced Accelerator Research Department (AARD) as an academic, experimental group dedicated to probing the technical limitations of accelerators while providing excellent educational opportunities for young scientists. The early years of the Accelerator Research Department B, as it was then known, were dedicated to a wealth of mostly student-led experiments to examine the promise of advanced accelerator techniques. High-gradient techniques including millimeter-wave rf acceleration, beam-driven plasma acceleration, and direct laser acceleration were pursued, including tests of materials under rf pulsed heating and short-pulse laser radiation, to establish the ultimate limitations on gradient. As the department and program grew, so did the motivation to found an accelerator research center that brought experimentalists together in a test facility environment to conduct a broad range of experiments. The Final Focus Test Beam and later the Next Linear Collider Test Accelerator provided unique experimental facilities for AARD staff and collaborators to carry out advanced accelerator experiments. Throughout the evolution of this dynamic program, Bob maintained a department atmosphere and culture more reminiscent of a university research group than a national laboratory department. His exceptional ability to balance multiple roles as scientist, professor, and administrator enabled the creation and …

Nanoparticles have long been recognized a hazardous substances by personnel working in the field. They are not, however, listed as a separate, distinct category of dangerous goods at present. As dangerous goods or hazardous substances, they require packaging and transportation practices which parallel the established practices for hazardous materials transport. Pending establishment of a distinct category for such materials by the Department of Transportation, existing consensus or industrial protocols must be followed. Action by DOT to establish appropriate packaging and transport requirements is recommended.

For long term stability analysis time variation of tunes is important. We have proposed and tested a technique for measuring the magnitude of this variation. This was made possible by using tune extraction algorithms that require small number of turns thus giving an instantaneous tune of the machine. In this paper we demonstrate the measured effect of the tune modulation with 60 Hz power supplies ripple, power line interference from SLAC linac operating at 30 Hz repetition rate, and nonperiodic variation.

The Santa Cruz Institute for Particle Physics (SCIPP) continues to be engaged in research and development towards an ILC detector. The latest efforts at SCIPP are described, including those associated with the LSTFE front-end readout ASIC, the use of charge division to obtain a longitudinal coordinate from silicon strip detectors, and the contribution of strip resistance to readout noise.

The design and performance optimization of particle accelerators are essential for the success of the DOE scientific program in the next decade. Particle accelerators are very complex systems whose accurate description involves a large number of degrees of freedom and requires the inclusion of many physics processes. Building on the success of the SciDAC-1 Accelerator Science and Technology project, the SciDAC-2 Community Petascale Project for Accelerator Science and Simulation (ComPASS) is developing a comprehensive set of interoperable components for beam dynamics, electromagnetics, electron cooling, and laser/plasma acceleration modelling. ComPASS is providing accelerator scientists the tools required to enable the necessary accelerator simulation paradigm shift from high-fidelity single physics process modeling (covered under SciDAC1) to high-fidelity multiphysics modeling. Our computational frameworks have been used to model the behavior of a large number of accelerators and accelerator R&D experiments, assisting both their design and performance optimization. As parallel computational applications, the ComPASS codes have been shown to make effective use of thousands of processors. ComPASS is in the first year of executing its plan to develop the next-generation HPC accelerator modeling tools. ComPASS aims to develop an integrated simulation environment that will utilize existing and new accelerator physics modules with petascale capabilities, …

Fungi of the phylum Basidiomycota, make up some 37percent of the described fungi, and are important from the perspectives of forestry, agriculture, medicine, and bioenergy. This diverse phylum includes the mushrooms, wood rots, plant pathogenic rusts and smuts, and some human pathogens. To better understand these important fungi, we have undertaken a comparative genomic analysis of the Basidiomycetes with available sequenced genomes. We report a phylogeny that sheds light on previously unclear evolutionary relationships among the Basidiomycetes. We also define a `core proteome? based on protein families conserved in all Basidiomycetes. We identify key expansions and contractions in protein families that may be responsible for the degradation of plant biomass such as cellulose, hemicellulose, and lignin. Finally, we speculate as to the genomic changes that drove such expansions and contractions.

The authors present results of B {yields} vector-vector (VV) and B {yields} vector-axial vector (VA) decays B{sup 0} {yields} {phi}X(X = {phi},{rho}{sup +} or {rho}{sup 0}), B{sup +} {yields} {phi}K{sup (*)+}, B{sup 0} {yields} K*K*, B{sup 0} {yields} {rho}{sup +}b{sub 1}{sup -} and B{sup +} {yields} K*{sup 0}{alpha}{sub 1}{sup +}. The largest dataset used for these results is based on 465 x 10{sup 6} {Upsilon}(4S) {yields} B{bar B} decays, collected with the BABAR detector at the PEP-II B meson factory located at the Stanford Linear Accelerator Center (SLAC). Using larger datasets, the BABAR experiment has provided more precise B {yields} VV measurements, further supporting the smaller than expected longitudinal polarization fraction of B {yields} {phi}K*. Additional B meson to vector-vector and vector-axial vector decays have also been studied with a view to shedding light on the polarization anomaly. Taking into account the available errors, we find no disagreement between theory and experiment for these additional decays.

Radioactive liquid waste has been stored in underground carbon steel tanks for nearly 60 years at the Savannah River Site. The site is currently in the process of removing the waste from these tanks in order to place it into vitrified, stable state for longer term storage. The last stage in the removal sequence is a chemical cleaning step that breaks up and dissolves metal oxide solids that cannot be easily pumped out of the tank. Oxalic acid has been selected for this purpose because it is an effective chelating agent for the solids and is not as corrosive as other acids. Electrochemical and immersion studies were conducted to investigate the corrosion behavior of carbon steel in simulated chemical cleaning environments. The effects of temperature, agitation, and the presence of sludge solids in the oxalic acid on the corrosion rate and the likelihood of hydrogen evolution were determined. The testing showed that the corrosion rates decreased significantly in the presence of the sludge solids. Corrosion rates increased with agitation, however, the changes were less noticeable.