In the mid-1990's, groups at SLAC and KEK began dedicated development of X-band (11.4 GHz) rf technology for a next generation, TeV-scale linear collider. The choice of a relatively high frequency, four times that of the SLAC 50 GeV Linac, was motivated by the cost benefits of having lower rf energy per pulse (hence fewer rf sources) and reasonable efficiencies at high gradients (hence shorter linacs). To realize such savings, however, requires operation at gradients and peak powers much higher than that hitherto achieved. During the past twelve years, these challenges were met through innovations on several fronts. This paper reviews these achievements, which include developments in the generation and transport of high power rf, and new insights into high gradient limitations.

The analysis of interactions between lineages at varying levels of genetic divergence can provide insights into the process of speciation through the accumulation of incompatible mutations. Ring species, and especially the Ensatina eschscholtzii system exemplify this approach. The plethodontid salamanders Ensatina eschscholtzii xanthoptica and Ensatina eschscholtzii platensis hybridize in the Central Sierran foothills of California. We compared the genetic structure across two transects (southern and northern Calaveras Co.), one of which was re-sampled over 20 years, and examined diagnostic molecular markers (eight allozyme loci and mitochondrial DNA) and a diagnostic quantitative trait (color pattern). Key results across all studies were: (i) cline centers for all markers were coincident and the zones were narrow, with width estimates of 730m to 2000m; (ii) cline centers at the northern Calaveras transect were coincident between 1981 and 2001, demonstrating repeatability over 5 generations; (iii) there are very few if any putative F1's, but a relatively high number of backcrossed individuals (57-86 percent) in the central portion of transects; (iv) we found substantial linkage disequilibrium in all three studies and strong heterozygote deficit both in northern Calaveras, in 2001, and southern Calaveras. Both linkage disequilibrium and heterozygote deficit show maximum values near the center of …

Current fluctuations of cathodic arcs were recorded withhigh analog bandwidth (up to 1 GHz) and fast digital sampling (up to 5Gsamples/sec). The power spectral density of the arc current wasdetermined by fast Fourier transform clearly showing material dependent,non-linear features in the frequency domain. These features can beassociated with the non-linear impedance of the conducting channelbetween cathode and anode, driven by the explosive nature of electronemission and plasma formation. The characteristic times of less than 100ns can be associated with individual explosive processes, "ectons," andtherefore represent the short-time physical cutoff for the fractal modelof cathodic arcs.

EPIcode (version 7.0) and ALOHA (version 5.2.3) are two of the designated toolbox codes identified in the Department of Energy's Implementation Plan for DNFSB Recommendation 2002-1 on Software Quality Assurance issues in the DOE Complex. Both have the capability to estimate evaporation rates from pools formed from chemical spills and to predict subsequent atmospheric transport and dispersion. This paper provides an overview of the algorithms used by EPIcode and ALOHA to calculate evaporation rates and downwind plume concentrations. The technical bases for these algorithms are briefly discussed, and differences in the EPIcode and ALOHA methodologies highlighted. In addition, sample calculations are performed using EPIcode and ALOHA for selected chemicals under various environmental conditions. Side-by-side comparisons of results from sample calculations are analyzed to illustrate the impact that the different methodologies used by EPIcode and ALOHA have on predicted evaporation rates and downwind concentrations.

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The authors present measurements of the branching fractions {Beta}(B{sup 0} {yields} D*{sup -}D*{sub s}{sup +}) and {Beta}(D{sub s}{sup +} {yields} {phi}{pi}{sup +}), based on 123 x 10{sup 6} {Upsilon}(4S) {yields} B{bar B} decays collected by the BABAR detector at the PEP-II asymmetric-energy e{sup +}e{sup -} B factory. A partial reconstruction technique is used to measure {Beta}(B{sup 0} {yields} D*{sup -}D*{sub s}{sup +}) and the decay chain is fully reconstructed to measure the branching fraction product {Beta}(B{sup 0} {yields} D*{sup -} D*{sub s}{sup +}) x {Beta}(D{sub s}{sup +} {yields} {phi}{pi}{sup +}). Comparing these two measurements provides a model-independent determination of the D{sub s}{sup +} {yields} {phi}{pi}{sup +} branching fraction. They obtain {Beta}(B{sup 0} {yields} D*{sup -}D*{sub s}{sup +}) = (1.88 {+-} 0.09 {+-} 0.17)% and {Beta}(D{sub s}{sup +} {yields} {phi}{pi}{sup +}) = (4.81 {+-} 0.52 {+-} 0.38)%, where the first uncertainties are statistical and the second systematic.

This paper describes a scheme for rapidly computing numerical values of definite integrals to very high accuracy, ranging from ordinary machine precision to hundreds or thousands of digits, even for functions with singularities or infinite derivatives at endpoints. Such a scheme is of interest not only in computational physics and computational chemistry, but also in experimental mathematics, where high-precision numerical values of definite integrals can be used to numerically discover new identities. This paper discusses techniques for a parallel implementation of this scheme, then presents performance results for 1-D and 2-D test suites. Results are also given for a certain problem from mathematical physics, which features a difficult singularity, confirming a conjecture to 20,000 digit accuracy. The performance rate for this latter calculation on 1024 CPUs is 690 Gflop/s. We believe that this and one other 20,000-digit integral evaluation that we report are the highest-precision non-trivial numerical integrations performed to date.

Assuring the security and privacy of institutionalinformation assets is a complex task for the line manager responsible forinternational and multi-national transactions. In the face of an unsureand often conflicting international legal framework, the line managermust employ all available tools in an Integrated Security and PrivacyManagement framework that ranges from legal obligations, to policy, toprocedure, to cutting edge technology to counter the rapidly evolvingcyber threat to information assets and the physical systems thatinformation systems control.

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Seismoelectric phenomena in sediments arise from acoustic wave-induced fluid motion in the pore space, which perturbs the electrostatic equilibrium of the electric double layer on the grain surfaces. Experimental techniques and the apparatus built to study this electrokinetic (EK) effect are described and outcomes for studies of seismoelectric phenomena in loose glass microspheres and medium-grain sand are presented. By varying the NaCl concentration in the pore fluid, we measured the conductivity dependence of two kinds of EK behavior: (1) the electric fields generated within the samples by the passage of transmitted acoustic waves, and (2) the electromagnetic wave produced at the fluid-sediment interface by the incident acoustic wave. Both phenomena are caused by relative fluid motion in the sediment pores--this feature is characteristic of poroelastic (Biot) media, but not predicted by either viscoelastic fluid or solid models. A model of plane-wave reflection from a fluid-sediment interface using EK-Biot theory leads to theoretical predictions that compare well to the experimental data for both sand and glass microspheres.

The Image Content Engine (ICE) is being developed to provide cueing assistance to human image analysts faced with increasingly large and intractable amounts of image data. The ICE architecture includes user configurable feature extraction pipelines which produce intermediate feature vector and match surface files which can then be accessed by interactive relational queries. Application of the feature extraction algorithms to large collections of images may be extremely time consuming and is launched as a batch job on a Linux cluster. The query interface accesses only the intermediate files and returns candidate hits nearly instantaneously. Queries may be posed for individual objects or collections. The query interface prompts the user for feedback, and applies relevance feedback algorithms to revise the feature vector weighting and focus on relevant search results. Examples of feature extraction and both model-based and search-by-example queries are presented.

A comprehensive transmutation study for steels considered in the selection of structural materials for magnetic and inertial fusion reactors has been performed in the IFMIF neutron irradiation scenario, as well as in the ITER and DEMO ones for comparison purposes. An element-by-element transmutation approach is used in the study, addressing the generation of: (1) H and He and (2) solid transmutants. The IEAF-2001 activation library and the activation code ACAB were applied to the IFMIF transmutation analysis, after proving the applicability of ACAB for transmutation calculations of this kind of intermediate energy systems.

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Characterizing laser-induced damage in optical materials is important for laser design and operation. Previous methods of evaluating optical materials damage resistance to high-power laser irradiation have typically suffered from shot to shot uncertainties in laser energy output and/or have insufficient sensitivity. More importantly such methods do not address the aspects of laser-induced damage important to laser beam propagation, namely the amount of light scattered by the damage. We present a method for the quantitative correlation of material modification on the surface or in the bulk of optical materials to laser parameters, which deconvolutes the effects of laser output instability. Image analysis, whereby two images, one a fluence spatial profile and the other a visible light scatter image of the damage, are directly compared to extract scatter as a function of fluence. An automated microscope is used to record the location and number of bulk damage sites and determine a calibration factor between the scatter signal observed and damage density pinpoints (ppt)/mm{sup 3}. We illustrate the method with a determination of both bulk damage density as a function of laser fluence and of a representative size distributions in a DKDP crystal. Our method is capable of determining damage densities with an …

At the Berkeley Structural Genomics Center (BSGC), our goalis to obtain a near-complete structural complement of proteins in theminimal organisms Mycoplasma genitalium and M. pneumoniae, two closelyrelated pathogens. Current targets for structure determination have beenselected in six major stages, starting with those predicted to be mosttractable to high throughput study and likely to yield new structuralinformation. We report on the process used to select these proteins, aswell as our target deselection procedure. Target deselection reducesexperimental effort by eliminating targets similar to those recentlysolved by the structural biology community or other centers. We measurethe impact of the 69 structures solved at the BSGC as of July 2004 onstructure prediction coverage of the M. pneumoniae and M. genitaliumproteomes. The number of Mycoplasma proteins for which thefold couldfirst be reliably assigned based on structures solved at the BSGC (24 M.pneumoniae and 21 M. genitalium) is approximately 25 percent of the totalresulting from work at all structural genomics centers and the worldwidestructural biology community (94 M. pneumoniae and 86M. genitalium)during the same period. As the number of structures contributed by theBSGC during that period is less than 1 percent of the total worldwideoutput, the benefits of a focused target selection strategy are apparent.If the …

Plutonium, because of its radioactive nature, ages from the ''inside out'' by means of self-irradiation damage and thus produces Frankel-type defects and defect clusters. The defects resulting from the residual lattice damage and helium in-growth could result in microstructural, electronic, and physical property changes. This paper presents volume, density, and electronic property change observed from both naturally and accelerated aged plutonium alloys. Accelerated alloys are plutonium alloys with a fraction of Pu-238 to accelerate the aging process by approximately 18 times the rate of unaged weapons-grade plutonium. After thirty-five equivalent years of aging on accelerated alloys, the samples have swelled in volume by approximately 0.1% and now exhibit a near linear volume increase due to helium in-growth. We will correlate the physical property changes to the electronic structure of plutonium observed by the resonant photoelectron spectroscopy (RESPES).

Recent attention has focused on the effect of spherical convergence on the nonlinear phase of Rayleigh-Taylor growth. For instability growth on spherically converging interfaces, modifications to the predictions of the Layzer model for the secular growth of a single, nonlinear mode have been reported [D. S. Clark and M. Tabak, Phys. Rev. E 72, 0056308 (2005).]. However, this model is limited in assuming a self-similar background implosion history as well as only addressing growth from a perturbation of already nonlinearly large amplitude. Additionally, only the case of single-mode growth was considered and not the multimode growth of interest in applications. Here, these deficiencies are remedied. First, the connection of the recent nonlinear results including convergence to the well-known results for the linear regime of growth is demonstrated. Second, the applicability of the model to more general implosion histories (i.e., not self-similar) is shown. Finally, to address the case of multimode growth with convergence, the recent nonlinear single mode results are combined with the Haan model formulation for weakly nonlinear multimode growth. Remarkably, convergence in the nonlinear regime is found not to modify substantially the multimode predictions of Haan's original model.

To learn the cause of intermittent radium concentrations in groundwater of Coastal Plain aquifers, 31 groundwater wells in South Carolina, U.S.A. were sampled for radium and other geochemical parameters. Sediments cored from near the well screens were also sampled to examine any relationship between sediment properties and radium concentration in the groundwater. Elevated radium concentrations only occurred in groundwater with low electrical conductivity and pH values below 6.3. The adsorption edge for radium on hematite--a major surface active mineral in these aquifers--is at a pH value of about 6. Near this value, small changes in pH can result in significant adsorption or desorption of radium. In groundwater with initially low alkalinity, small intermittent decreases in partial pressure of carbon dioxide in groundwater cause decreases in pH and desorption of radium. The result is intermittent elevated radium concentrations.

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Domain decomposed Monte Carlo codes, like other domain-decomposed codes, are difficult to debug. Domain decomposition is prone to error, and interactions between the domain decomposition code and the rest of the algorithm often produces subtle bugs. These bugs are particularly difficult to find in a Monte Carlo algorithm, in which the results have statistical noise. Variations in the results due to statistical noise can mask errors when comparing the results to other simulations or analytic results. If a code can get the same result on one domain as on many, debugging the whole code is easier. This reproducibility property is also desirable when comparing results done on different numbers of processors and domains. We describe how reproducibility, to machine precision, is obtained on different numbers of domains in an Implicit Monte Carlo photonics code.

This paper describes a joint project by the Naval Research Laboratory (NRL) and Argonne National Laboratory (ANL), in collaboration with the Stanford Linear Accelerator Center (SLAC), to develop a dielectric-loaded accelerator (DLA) test facility powered by a high-power 11.424-GHz magnicon amplifier. The magnicon can presently produce 25 MW of output power in a 250-ns pulse at 10 Hz, and efforts are in progress to increase this to 50 MW. The facility will include a 5 MeV electron inector being developed by the Accelerator Laboratory of Tsinghua University in Beijing, China. The DLA test structures are being developed by ANL, and some have undergone testing at NRL at gradients up to {approx} 8 MV/m. SLAC is developing a means to combine the two magnicon output arms, and to drive an injector and accelerator with separate control of the power ratio and relative phase. RWBruce Associates, Inc., working with NRl, is developing a means to join short ceramic sections into a continuous accelerator tube by ceramic brazing using an intense millimeter-wave beam. The installation and testing of the first dielectric-loaded test accelerator, including injector, DLA structure, and spectrometer, should take place within the next year. The facility will be used for testing …

High-level nuclear waste produced from fuel reprocessing operations at the Savannah River Site (SRS) requires pretreatment to remove {sup 137}Cs, {sup 90}Sr and alpha-emitting radionuclides (i.e., actinides) prior to disposal onsite as low level waste. Separation processes planned at SRS include caustic side solvent extraction, for {sup 137}Cs removal, and sorption of {sup 90}Sr and alpha-emitting radionuclides onto monosodium titanate (MST). The predominant alpha-emitting radionuclides in the highly alkaline waste solutions include plutonium isotopes {sup 238}Pu, {sup 239}Pu and {sup 240}Pu. This paper describes recent results to produce an improved sodium titanate material that exhibits increased removal kinetics and capacity for {sup 90}Sr and alpha-emitting radionuclides compared to the baseline MST material.

By scanning gated cameras and gated tune monitors across the bunch pattern during normal colliding-bunch operation of PEP-II, the tunes and beam sizes of individual bunches were measured simultaneously in the high and low energy storage rings of PEP-II. The measurements were made with 1561 colliding bunches in PEP-II, arranged in trains of 66 bunches, with each bunch in the train separated by 4.2 ns. The tune and beam size measurements were correlated with the current, luminosity, and specific luminosity of the bunch. The results show a vertical tune shift at the start and end of the mini-trains, a luminosity droop along the mini-train, and specific luminosity drop in the first and last bunches of the train, since they experience a different parasitic crossing on either side of the interaction point (IP).

The production of comprehensive cDNA clone collections is an important goal of the human and model organism genome projects. cDNA sequences are used to determine the structures of transcripts, including splice junctions, polyadenylation sites, and 5' and 3' untranslated regions (UTRs). cDNA collections are also valuable resources for functional studies of genes and proteins. Expressed Sequence Tag (EST)sequencing is the method of choice for recovering cDNAs representing a majority of the transcripts encoded in a eukaryotic genome. However, EST sequencing samples a library at random, so it realizes diminishing returns as the project progresses. To drive cDNA collections toward completion new methods are needed to recover cDNAs representing specific genes and alternative transcripts, including transcripts with low expression levels. We describe a simple and effective inverse-PCR-based method for screening plasmid libraries to recover intact cDNAs for specific transcripts. We tested the method by screening libraries used in our Drosophila EST projects for 153 transcription factor genes that were not yet represented by full-length cDNAs. We recovered target-specific clones for 104 of the genes: 46 exactly match, 30 improve and 28partially match current gene annotations. Successful application of the screening method depends on cDNA library complexity and quality of the gene …