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Asymptotic Freedom in the Diffusive Regime of Neutron Transport (open access)

Asymptotic Freedom in the Diffusive Regime of Neutron Transport

The accuracy of a numerical method for solving the neutron transport equation is limited by the smallest mean free path in the problem. Since problems in the asymptotic diffusive regimes have vanishingly small mean free paths, it seems hopeless, given a limited amount of computer memory, that an accurate solution can be obtained for these problems. However we found that the accuracy of a numerical method improves as the scattering ratio increases with the total cross section and the grid spacing held fixed for problems that are in the asymptotic diffusive regime. This phenomenon is independent of the numerical method and can be explained on physical grounds. The numerical results by the Diamond Difference Method are given to show this phenomenon.
Date: January 25, 2005
Creator: Chang, B.
System: The UNT Digital Library
Beryllium Sampling and Analysis Within the DOE Complex and Opportunities for Standardization (open access)

Beryllium Sampling and Analysis Within the DOE Complex and Opportunities for Standardization

Since the U. S. Department of Energy (DOE) published the DOE Beryllium Rule (10 CFR 850) in 1999, DOE sites have been required to measure beryllium on air filters and wipes for worker protection and for release of materials from beryllium-controlled areas. Measurements in the nanogram range on a filter or wipe are typically required. Industrial hygiene laboratories have applied methods from various analytical compendia, and a number of issues have emerged with sampling and analysis practices. As a result, a committee of analytical chemists, industrial hygienists, and laboratory managers was formed in November 2003 to address the issues. The committee developed a baseline questionnaire and distributed it to DOE sites and other agencies in the U.S. and U.K. The results of the questionnaire are presented in this paper. These results confirmed that a wide variety of practices were in use in the areas of sampling, sample preparation, and analysis. Additionally, although these laboratories are generally accredited by the American Industrial Hygiene Association (AIHA), there are inconsistencies in performance among accredited labs. As a result, there are significant opportunities for development of standard methods that could improve consistency. The current availabilities and needs for standard methods are further discussed in …
Date: January 25, 2005
Creator: BRISSON, MICHAEL
System: The UNT Digital Library
Cosmology and the S-matrix (open access)

Cosmology and the S-matrix

We study conditions for the existence of asymptotic observables in cosmology. With the exception of de Sitter space, the thermal properties of accelerating universes permit arbitrarily long observations, and guarantee the production of accessible states of arbitrarily large entropy. This suggests that some asymptotic observables may exist, despite the presence of an event horizon. Comparison with decelerating universes shows surprising similarities: Neither type suffers from the limitations encountered in de Sitter space, such as thermalization and boundedness of entropy. However, we argue that no realistic cosmology permits the global observations associated with an S-matrix.
Date: January 25, 2005
Creator: Bousso, Raphael
System: The UNT Digital Library
Multiplicative or t1 Noise in NMR Spectroscopy (open access)

Multiplicative or t1 Noise in NMR Spectroscopy

The signal in an NMR experiment is highly sensitive to fluctuations of the environment of the sample. If, for example, the static magnetic field B{sub 0}, the amplitude and phase of radio frequency (rf) pulses, or the resonant frequency of the detection circuit are not perfectly stable and reproducible, the magnetic moment of the spins is altered and becomes a noisy quantity itself. This kind of noise not only depends on the presence of a signal, it is in fact proportional to it. Since all the spins at a particular location in a sample experience the same environment at any given time, this noise primarily affects the reproducibility of an experiment, which is mainly of importance in the indirect dimensions of a multidimensional experiment, when intense lines are suppressed with a phase cycle, or for difference spectroscopy techniques. Equivalently, experiments which are known to be problematic with regard to their reproducibility, like flow experiments or experiments with a mobile target, tend to be affected stronger by multiplicative noise. In this article it is demonstrated how multiplicative noise can be identified and characterized using very simple, repetitive experiments. An error estimation approach is developed to give an intuitive, yet quantitative understanding …
Date: January 25, 2005
Creator: Granwehr, Josef
System: The UNT Digital Library
Numerical Modeling of Hohlraum Radiation Conditions: Spatial and Spectral Variations due to Sample Position, Beam Pointing, and Hohlraum Geometry (open access)

Numerical Modeling of Hohlraum Radiation Conditions: Spatial and Spectral Variations due to Sample Position, Beam Pointing, and Hohlraum Geometry

View-factor simulations are presented of the spatially varying radiation conditions inside double-ended gold hohlraums and single-ended gold hohlraums (''halfraums'') used in inertial confinement fusion (ICF) and high energy density (HED) physics experiments [J. Lindl, Phys. Plasmas 11, 339 (2004); M. D. Rosen, Phys. Plasmas 3, 1803 (1996)]. It is shown that in many circumstances, the common assumption that the hohlraum ''drive'' can be characterized by a single temperature is too simplistic. Specifically, the radiation conditions seen by an experimental package can differ significantly from the wall reemission measured through diagnostic holes or laser entrance holes (LEHs) by absolutely calibrated detectors. Furthermore, even in situations where the radiation temperature is roughly the same for diagnostics and experimental packages, or for packages at different locations, the spectral energy distributions can vary significantly, due to the differing fractions of reemitting wall, laser hot spots, and LEHs seen from different locations. We find that the spatial variation of temperature, and especially the differences between what diagnostics looking in the LEH measure vs. the radiation temperature on wall-mounted experimental packages, is generally greater for double-ended hohlraums than it is for halfraums. View-factor simulations can also be used to explore experimental variables (halfraum length and geometry, …
Date: January 25, 2005
Creator: Cohen, D. H.; Landen, O. L. & MacFarlane, J. J.
System: The UNT Digital Library
On Viscosity, Conduction and Sound Waves in the Intracluster Medium (open access)

On Viscosity, Conduction and Sound Waves in the Intracluster Medium

None
Date: January 25, 2005
Creator: Fabian, A. C.; Reynolds, C. S.; Taylor, G. B. & Dunn, R. J. H.
System: The UNT Digital Library
Characterization of the restricted rotation of the dimethyl groups in chemically N-terminal 13C labeled Antifreeze Glycoproteins: A temperature dependent study in water to ice through the supercooled state. (open access)

Characterization of the restricted rotation of the dimethyl groups in chemically N-terminal 13C labeled Antifreeze Glycoproteins: A temperature dependent study in water to ice through the supercooled state.

None
Date: February 25, 2005
Creator: Krishnan, V. V.; Lau, E. Y.; Tsvetkova, N. M.; Feeney, R. E.; Fink, W. H. & Yeh, Y.
System: The UNT Digital Library
Demonstration of Record BER and Number of Users for Optical CDMA (O-CDMA), with Implications to Secure Communications (open access)

Demonstration of Record BER and Number of Users for Optical CDMA (O-CDMA), with Implications to Secure Communications

We demonstrate a BER of 10{sup -11} for 16 simultaneous users, using wavelength/time O-CDMA. We show the extent to which severe multi-access interference can be used to mask and/or degrade the signal from an intruder.
Date: February 25, 2005
Creator: Mendez, A. J.; Hernandez, V. J.; Bennett, C. V.; Gagliardi, R. M. & Lennon, W. J.
System: The UNT Digital Library
Nanocrystalline Growth and Grain-Size Effects in Au-Cu Electrodeposits (open access)

Nanocrystalline Growth and Grain-Size Effects in Au-Cu Electrodeposits

The processing-structure-property relationship is investigated for electrodeposited foils of the gold-copper alloy system. A model is presented that relates the deposition process parameters to the nanocrystalline grain size. An activation energy of 1.52 eV {center_dot} atom{sup -1} for growth is determined for a long pulse (>10 msec) mode, and is 0.16 eV {center_dot} atom{sup -1} for short pulses (<5 msec). The affect of nanocrystalline grain size on the mechanical properties is assessed using indentation measurements. A Hall-Petch type variation of the Vickers microhardness with nanocrystalline grain size (>6 nm) is observed for Au-Cu samples with 1-12 wt.% Cu as tested in cross-section. The hardness increases three-fold from a rule-of-mixtures value <1 GPa to a maximum of 2.9 GPa.
Date: February 25, 2005
Creator: Jankowski, Alan Frederic; Saw, C. K.; Harper, J. F.; Vallier, R. F.; Ferreira, J. L. & Hayes, Jeffrey P.
System: The UNT Digital Library
A Reference-Dependent Regret Model for Deterministic Trade-off Studies (open access)

A Reference-Dependent Regret Model for Deterministic Trade-off Studies

Today's typical multi-criteria decision analysis is based on classical expected utility theory that assumes a mythical ''Rational Individual'' immune to psychological influences such as anticipated regret. It is therefore in conflict with rational individuals who trade-off some benefits and forgo the alternative with the highest total classical utility for a more balanced alternative in order to reduce their levels of anticipated regret. This paper focuses on decision making under certainty. It presents a reference-dependent regret model (RDRM) in which the level of regret that an individual experiences depends on the absolute values rather than the differences of the utilities of the chosen and forgone alternatives. The RDRM best choice may differ from the conventional linear additive utility model, the analytic hierarchy process, and the regret theory of Bell and Loomes and Sugden. Examples are presented that indicate that RDRM is the better predictive descriptor for decision making under certainty. RDRM satisfies transitivity of the alternatives under pairwise comparisons and models rank reversal consistent with observed reasonable choices under dynamic or distinct situations. Like regret theory, the RDRM utilities of all the alternatives under consideration are interrelated. For complex trade-off studies regret is incorporated as an element of a cost-utility-regret analysis …
Date: February 25, 2005
Creator: Kujawski, Edouard
System: The UNT Digital Library
First-Principles Theory of Correlated Transport through Nanojunctions (open access)

First-Principles Theory of Correlated Transport through Nanojunctions

Article on the first-principles theory of correlated transport through nanojunctions.
Date: March 25, 2005
Creator: Ferretti, A.; Calzolari, Arrigo; Di Felice, R.; Manghi, F.; Caldas, Marilia J.; Buongiorno Nardelli, Marco et al.
System: The UNT Digital Library
Genomes, Phylogeny, and Evolutionary Systems Biology (open access)

Genomes, Phylogeny, and Evolutionary Systems Biology

With the completion of the human genome and the growing number of diverse genomes being sequenced, a new age of evolutionary research is currently taking shape. The myriad of technological breakthroughs in biology that are leading to the unification of broad scientific fields such as molecular biology, biochemistry, physics, mathematics and computer science are now known as systems biology. Here I present an overview, with an emphasis on eukaryotes, of how the postgenomics era is adopting comparative approaches that go beyond comparisons among model organisms to shape the nascent field of evolutionary systems biology.
Date: March 25, 2005
Creator: Medina, Monica
System: The UNT Digital Library
Parallel Deterministic Neutron Transport with AMR (open access)

Parallel Deterministic Neutron Transport with AMR

AMTRAN, a one, two and three dimensional Sn neutron transport code with adaptive mesh refinement (AMR) has been parallelized with MPI over spatial domains and energy groups and with threads over angles. Block refined AMR is used with linear finite element representations for the fluxes, which are node centered. AMR requirements are determined by minimum mean free path calculations throughout the problem and can provide an order of magnitude or more reduction in zoning requirements for the same level of accuracy, compared to a uniformly zoned problem.
Date: March 25, 2005
Creator: Clouse, C
System: The UNT Digital Library
Robust Quantum-Based Interatomic Potentials for Multiscale Modeling in Transition Metals (open access)

Robust Quantum-Based Interatomic Potentials for Multiscale Modeling in Transition Metals

First-principles generalized pseudopotential theory (GPT) provides a fundamental basis for transferable multi-ion interatomic potentials in transition metals and alloys within density-functional quantum mechanics. In central bcc transition metals, where multi-ion angular forces are important to structural properties, simplified model GPT or MGPT potentials have been developed based on canonical d bands to allow analytic forms and large-scale atomistic simulations. Robust, advanced-generation MGPT potentials have now been obtained for Ta and Mo and successfully applied to a wide range of structural, thermodynamic, defect and mechanical properties at both ambient and extreme conditions. Selected applications to multiscale modeling discussed here include dislocation core structure and mobility, atomistically informed dislocation dynamics simulations of plasticity, and thermoelasticity and high-pressure strength modeling. Recent algorithm improvements have provided a more general matrix representation of MGPT beyond canonical bands, allowing improved accuracy and extension to f-electron actinide metals, an order of magnitude increase in computational speed for dynamic simulations, and the still-in-progress development of temperature-dependent potentials.
Date: March 25, 2005
Creator: Moriarty, J A; Benedict, L X; Glosli, J N; Hood, R Q; Orlikowski, D A; Patel, M V et al.
System: The UNT Digital Library
Science Day 2005 Poster Abstracts: Astrophysics (open access)

Science Day 2005 Poster Abstracts: Astrophysics

None
Date: March 25, 2005
Creator: Kline, K M
System: The UNT Digital Library
Science Day 2005 Poster Abstracts: Biology (open access)

Science Day 2005 Poster Abstracts: Biology

None
Date: March 25, 2005
Creator: Kline, K M
System: The UNT Digital Library
Science Day 2005 Poster Abstracts: Light and Matter (open access)

Science Day 2005 Poster Abstracts: Light and Matter

None
Date: March 25, 2005
Creator: Kline, K M
System: The UNT Digital Library
Science Day 2005 Poster Abstracts: Nuclear Physics (open access)

Science Day 2005 Poster Abstracts: Nuclear Physics

None
Date: March 25, 2005
Creator: Kline, K M
System: The UNT Digital Library
Science Day 2005 Poster Abstracts: Theory and Computation (open access)

Science Day 2005 Poster Abstracts: Theory and Computation

None
Date: March 25, 2005
Creator: Kline, K M
System: The UNT Digital Library
An Improved Linear Tetrahedral Element for Plasticity (open access)

An Improved Linear Tetrahedral Element for Plasticity

A stabilized, nodally integrated linear tetrahedral is formulated and analyzed. It is well known that linear tetrahedral elements perform poorly in problems with plasticity, nearly incompressible materials, and acute bending. For a variety of reasons, linear tetrahedral elements are preferable to quadratic tetrahedral elements in most nonlinear problems. Whereas, mixed methods work well for linear hexahedral elements, they don't for linear tetrahedrals. On the other hand, automatic mesh generation is typically not feasible for building many 3D hexahedral meshes. A stabilized, nodally integrated linear tetrahedral is developed and shown to perform very well in problems with plasticity, nearly incompressible materials and acute bending. Furthermore, the formulation is analytically and numerically shown to be stable and optimally convergent. The element is demonstrated to perform well in several standard linear and nonlinear benchmarks.
Date: April 25, 2005
Creator: Puso, M
System: The UNT Digital Library
Introduction to the HPC Challenge Benchmark Suite (open access)

Introduction to the HPC Challenge Benchmark Suite

The HPC Challenge benchmark suite has been released by the DARPA HPCS program to help define the performance boundaries of future Petascale computing systems. HPC Challenge is a suite of tests that examine the performance of HPC architectures using kernels with memory access patterns more challenging than those of the High Performance Linpack (HPL) benchmark used in the Top500 list. Thus, the suite is designed to augment the Top500 list, providing benchmarks that bound the performance of many real applications as a function of memory access characteristics e.g., spatial and temporal locality, and providing a framework for including additional tests. In particular, the suite is composed of several well known computational kernels (STREAM, HPL, matrix multiply--DGEMM, parallel matrix transpose--PTRANS, FFT, RandomAccess, and bandwidth/latency tests--b{sub eff}) that attempt to span high and low spatial and temporal locality space. By design, the HPC Challenge tests are scalable with the size of data sets being a function of the largest HPL matrix for the tested system.
Date: April 25, 2005
Creator: Luszczek, Piotr; Dongarra, Jack J.; Koester, David; Rabenseifner,Rolf; Lucas, Bob; Kepner, Jeremy et al.
System: The UNT Digital Library
Large-Scale First-Principles Molecular Dynamics Simulations on the BlueGene/L Platform using the Qbox Code (open access)

Large-Scale First-Principles Molecular Dynamics Simulations on the BlueGene/L Platform using the Qbox Code

We demonstrate that the Qbox code supports unprecedented large-scale First-Principles Molecular Dynamics (FPMD) applications on the BlueGene/L supercomputer. Qbox is an FPMD implementation specifically designed for large-scale parallel platforms such as BlueGene/L. Strong scaling tests for a Materials Science application show an 86% scaling efficiency between 1024 and 32,768 CPUs. Measurements of performance by means of hardware counters show that 37% of the peak FPU performance can be attained.
Date: April 25, 2005
Creator: Gygi, F.; Draeger, E. W.; de Supinski, B. R.; Yates, R. K.; Franchetti, F.; Kral, S. et al.
System: The UNT Digital Library
The Methods of Producing and Analyzing Polarized Neutron Beams for Hyspec at the SNS. (open access)

The Methods of Producing and Analyzing Polarized Neutron Beams for Hyspec at the SNS.

The Hybrid Spectrometer (HYSPEC), under construction at the SNS on beam line 14B, is the only inelastic scattering instrument designed to enable polarization of the incident and the scattered neutron beams. A Heusler monochromator will replace the graphite crystal for producing polarized neutrons. In the scattered beam it is planned to use a collimator--multi-channel supermirror bender array to analyze the polarization of the scattered beam over the final energy range from 5-20 meV. Other methods of polarization analysis under consideration such as transmission filters using He{sup 3}, Sm, and polarized protons are considered. Their performance is estimated and a comparison of the various methods of polarization is made.
Date: April 25, 2005
Creator: Shapiro, S. M.; Passell, L.; Zaliznyak, A.; Ghosh, V. J.; Leonhardt, W. L. & Hagen, M. E.
System: The UNT Digital Library
Mitotic Exit Control as an Evolved Complex System (open access)

Mitotic Exit Control as an Evolved Complex System

The exit from mitosis is the last critical decision a cell has to make during a division cycle. A complex regulatory system has evolved to evaluate the success of mitotic events and control this decision. Whereas outstanding genetic work in yeast has led to rapid discovery of a large number of interacting genes involved in the control of mitotic exit, it has also become increasingly difficult to comprehend the logic and mechanistic features embedded in the complex molecular network. Our view is that this difficulty stems in part from the attempt to explain mitotic exit control using concepts from traditional top-down engineering design, and that exciting new results from evolutionary engineering design applied to networks and electronic circuits may lend better insights. We focus on four particularly intriguing features of the mitotic exit control system: the two-stepped release of Cdc14; the self-activating nature of Tem1 GTPase; the spatial sensor associated with the spindle pole body; and the extensive redundancy in the mitotic exit network. We attempt to examine these design features from the perspective of evolutionary design and complex system engineering.
Date: April 25, 2005
Creator: Bosl, W & Li, R
System: The UNT Digital Library