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The Clifton Record (Clifton, Tex.), Vol. 109, No. 43, Ed. 1 Friday, August 20, 2004 (open access)

The Clifton Record (Clifton, Tex.), Vol. 109, No. 43, Ed. 1 Friday, August 20, 2004

Weekly newspaper from Clifton, Texas that includes local, state, and national news along with advertising.
Date: August 20, 2004
Creator: Smith, W. Leon
Object Type: Newspaper
System: The Portal to Texas History
Polk County Enterprise (Livingston, Tex.), Vol. 122, No. 51, Ed. 1 Sunday, June 20, 2004 (open access)

Polk County Enterprise (Livingston, Tex.), Vol. 122, No. 51, Ed. 1 Sunday, June 20, 2004

Semi-weekly newspaper from Livingston, Texas that includes local, state and national news along with advertising.
Date: June 20, 2004
Creator: White, Barbara
Object Type: Newspaper
System: The Portal to Texas History
Polk County Enterprise (Livingston, Tex.), Vol. 122, No. 41, Ed. 1 Thursday, May 20, 2004 (open access)

Polk County Enterprise (Livingston, Tex.), Vol. 122, No. 41, Ed. 1 Thursday, May 20, 2004

Semi-weekly newspaper from Livingston, Texas that includes local, state and national news along with advertising.
Date: May 20, 2004
Creator: White, Barbara
Object Type: Newspaper
System: The Portal to Texas History
The Odem-Edroy Times (Odem, Tex.), Vol. 58, No. 20, Ed. 1 Thursday, May 20, 2004 (open access)

The Odem-Edroy Times (Odem, Tex.), Vol. 58, No. 20, Ed. 1 Thursday, May 20, 2004

Weekly newspaper from Odem, Texas that includes local, state, and national news along with advertising.
Date: May 20, 2004
Creator: Hall, Beki
Object Type: Newspaper
System: The Portal to Texas History
The Clifton Record (Clifton, Tex.), Vol. 109, No. 15, Ed. 1 Friday, February 20, 2004 (open access)

The Clifton Record (Clifton, Tex.), Vol. 109, No. 15, Ed. 1 Friday, February 20, 2004

Semi-weekly newspaper from Clifton, Texas that includes local, state, and national news along with advertising.
Date: February 20, 2004
Creator: Smith, W. Leon
Object Type: Newspaper
System: The Portal to Texas History
Hondo Anvil Herald (Hondo, Tex.), Vol. 118, No. 21, Ed. 1 Thursday, May 20, 2004 (open access)

Hondo Anvil Herald (Hondo, Tex.), Vol. 118, No. 21, Ed. 1 Thursday, May 20, 2004

Weekly newspaper from Hondo, Texas that includes local, state, and national news along with extensive advertising.
Date: May 20, 2004
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
Seminole Sentinel (Seminole, Tex.), Vol. 95, No. 72, Ed. 1 Sunday, June 20, 2004 (open access)

Seminole Sentinel (Seminole, Tex.), Vol. 95, No. 72, Ed. 1 Sunday, June 20, 2004

Semi-weekly newspaper from Seminole, Texas that includes local, state, and national news along with extensive advertising.
Date: June 20, 2004
Creator: unknown
Object Type: Newspaper
System: The Portal to Texas History
Port Aransas South Jetty (Port Aransas, Tex.), Vol. 34, No. 21, Ed. 1 Thursday, May 20, 2004 (open access)

Port Aransas South Jetty (Port Aransas, Tex.), Vol. 34, No. 21, Ed. 1 Thursday, May 20, 2004

Weekly newspaper from Port Aransas, Texas on Mustang Island that includes local, state and national news along with advertising.
Date: May 20, 2004
Creator: Judson, Mary
Object Type: Newspaper
System: The Portal to Texas History
Comparative genomic analysis reveals a distant liver enhancer upstream of the COUP-TFII gene (open access)

Comparative genomic analysis reveals a distant liver enhancer upstream of the COUP-TFII gene

COUP-TFII is a central nuclear hormone receptor that tightly regulates the expression of numerous target lipid metabolism genes in vertebrates. However, it remains unclear how COUP-TFII itself is transcriptionally controlled since studies with its promoter and upstream region fail to recapitulate the genes liver expression. In an attempt to identify liver enhancers in the vicinity of COUP-TFII, we employed a comparative genomic approach. Initial comparisons between humans and mice of the 3,470kb gene poor region surrounding COUP-TFII revealed 2,023 conserved non-coding elements. To prioritize a subset of these elements for functional studies, we performed further genomic comparisons with the orthologous pufferfish (Fugu rubripes) locus and uncovered two anciently conserved non-coding sequences (CNS) upstream of COUP-TFII (CNS-62kb and CNS-66kb). Testing these two elements using reporter constructs in liver (HepG2) cells revealed that CNS-66kb, but not CNS-62kb, yielded robust in vitro enhancer activity. In addition, an in vivo reporter assay using naked DNA transfer with CNS-66kb linked to luciferase displayed strong reproducible liver expression in adult mice, further supporting its role as a liver enhancer. Together, these studies further support the utility of comparative genomics to uncover gene regulatory sequences based on evolutionary conservation and provide the substrates to better understand the …
Date: August 20, 2004
Creator: Baroukh, Nadine; Ahituv, Nadav; Chang, Jessie; Shoukry, Malak; Afzal, Veena; Rubin, Edward M. et al.
Object Type: Article
System: The UNT Digital Library
Cycles in fossil diversity (open access)

Cycles in fossil diversity

It is well-known that the diversity of life appears to fluctuate during the course the Phanerozoic, the eon during which hard shells and skeletons left abundant fossils (0-542 Ma). Using Sepkoski's compendium of the first and last stratigraphic appearances of 36380 marine genera, we report a strong 62 {+-} 3 Myr cycle, which is particularly strong in the shorter-lived genera. The five great extinctions enumerated by Raup and Sepkoski may be an aspect of this cycle. Because of the high statistical significance, we also consider contributing environmental factors and possible causes.
Date: October 20, 2004
Creator: Rohde, Robert A. & Muller, Richard A.
Object Type: Article
System: The UNT Digital Library
Measurement uncertainties and minimum detectable concentrations for the in situ NaI gamma spectroscopy systems used at the Fernald site. (open access)

Measurement uncertainties and minimum detectable concentrations for the in situ NaI gamma spectroscopy systems used at the Fernald site.

This report determines the uncertainties associated with measurements made by using the mobile gamma-ray spectrometers deployed at the U.S. Department of Energy's Fernald Closure Project to characterize soil contaminated with {sup 238}U, {sup 226}Ra, and {sup 232}Th. It also examines minimum detectable concentrations (MDCs) for these instruments. The spectrometers use sodium iodide (NaI) detectors and are mounted on a variety of platforms that allow access to all areas of the site, including deep excavations. They are utilized for surveying large areas to obtain distribution patterns for radionuclides in soil, determining whether activity concentrations exceed action levels for hot spots, and determining if the concentration of total uranium exceeds the allowable level for Fernald's on-site disposal facility. Soil cleanup levels at Fernald are 82 parts per million (ppm) for total uranium (27.3 pCi/g for {sup 238}U), 1.7 pCi/g for {sup 226}Ra, and 1.5 pCi/g for {sup 232}Th. The waste acceptance criterion (WAC) for total uranium for the disposal facility is 1030 ppm. Uncertainties associated with counting, efficiency calibration, the calibration pad and sources used, the vertical distribution of contaminants in soil, the use of moisture corrections, and the use of corrections to account for the loss of radon from soil are …
Date: July 20, 2004
Creator: Davis, M. J.
Object Type: Report
System: The UNT Digital Library
When a Rose Is Not a Rose: A Review of Recent Estimates of Congestion Costs (open access)

When a Rose Is Not a Rose: A Review of Recent Estimates of Congestion Costs

None
Date: May 20, 2004
Creator: Lesieutre, Bernard C. & Eto, Joseph H.
Object Type: Article
System: The UNT Digital Library
A survey of state clean energy fund support for biomass (open access)

A survey of state clean energy fund support for biomass

This survey reviews efforts by CESA member clean energy funds to promote the use of biomass as a renewable energy source. For each fund, details are provided regarding biomass eligibility for support, specific programs offering support to biomass projects, and examples of supported biomass projects (if available). For the purposes of this survey, biomass is defined to include bio-product gasification, combustion, co-firing, biofuel production, and the combustion of landfill gas, though not all of the programs reviewed here take so wide a definition. Programs offered by non-CESA member funds fall outside the scope of this survey. To date, three funds--the California Energy Commission, Wisconsin Focus on Energy, and the New York State Energy Research and Development Authority--have offered programs targeted specifically at the use of biomass as a renewable energy source. We begin by reviewing efforts in these three funds, and then proceed to cover programs in other funds that have provided support to biomass projects when the opportunity has arisen, but otherwise do not differentially target biomass relative to other renewable technologies.
Date: August 20, 2004
Creator: Fitzgerald, Garrett; Bolinger, Mark & Wiser, Ryan
Object Type: Report
System: The UNT Digital Library
Optimization of an accelerator-based epithermal neutron source for neutron capture therapy (open access)

Optimization of an accelerator-based epithermal neutron source for neutron capture therapy

A modeling investigation was performed to choose moderator material and size for creating optimal epithermal neutron beams for BNCT based on a proton accelerator and the 7Li(p,n)7Be reaction as a neutrons source. An optimal configuration is suggested for the beam shaping assembly made from polytetrafluoroethylene and magnesium fluorine. Results of calculation were experimentally tested and are in good agreement with measurements.
Date: February 20, 2004
Creator: Kononov, O. E.; Kononov, V. N.; Bokhovko, M. V.; Korobeynikov, V. V.; Soloviev, A. N. & Chu, W. T.
Object Type: Article
System: The UNT Digital Library
Molecular environmental science : an assessment of research accomplishments, available synchrotron radiation facilities, and needs. (open access)

Molecular environmental science : an assessment of research accomplishments, available synchrotron radiation facilities, and needs.

Synchrotron-based techniques are fundamental to research in ''Molecular Environmental Science'' (MES), an emerging field that involves molecular-level studies of chemical and biological processes affecting the speciation, properties, and behavior of contaminants, pollutants, and nutrients in the ecosphere. These techniques enable the study of aqueous solute complexes, poorly crystalline materials, solid-liquid interfaces, mineral-aqueous solution interactions, microbial biofilm-heavy metal interactions, heavy metal-plant interactions, complex material microstructures, and nanomaterials, all of which are important components or processes in the environment. Basic understanding of environmental materials and processes at the molecular scale is essential for risk assessment and management, and reduction of environmental pollutants at field, landscape, and global scales. One of the main purposes of this report is to illustrate the role of synchrotron radiation (SR)-based studies in environmental science and related fields and their impact on environmental problems of importance to society. A major driving force for MES research is the need to characterize, treat, and/or dispose of vast quantities of contaminated materials, including groundwater, sediments, and soils, and to process wastes, at an estimated cost exceeding 150 billion dollars through 2070. A major component of this problem derives from high-level nuclear waste. Other significant components come from mining and industrial wastes, …
Date: October 20, 2004
Creator: Brown, G. E., Jr.; Sutton, S. R.; Bargar, J. R.; Shuh, D. K.; Fenter, P. A. & Kemner, K. M.
Object Type: Report
System: The UNT Digital Library
Phylogeny of the sea hares in the aplysia clade based on mitochondrial DNA sequence data (open access)

Phylogeny of the sea hares in the aplysia clade based on mitochondrial DNA sequence data

Sea hare species within the Aplysia clade are distributed worldwide. Their phylogenetic and biogeographic relationships are, however, still poorly known. New molecular evidence is presented from a portion of the mitochondrial cytochrome oxidase c subunit 1 gene (cox1) that improves our understanding of the phylogeny of the group. Based on these data a preliminary discussion of the present distribution of sea hares in a biogeographic context is put forward. Our findings are consistent with only some aspects of the current taxonomy and nomenclatural changes are proposed. The first, is the use of a rank free classification for the different Aplysia clades and subclades as opposed to previously used genus and subgenus affiliations. The second, is the suggestion that Aplysia brasiliana (Rang, 1828) is a junior synonym of Aplysia fasciata (Poiret, 1789). The third, is the elimination of Neaplysia since its only member is confirmed to be part of the large Varria clade.
Date: February 20, 2004
Creator: Medina, Monica; Collins, Timothy & Walsh, Patrick J.
Object Type: Article
System: The UNT Digital Library
Pilot-Scale Testing of a Rotary Microfilter with Irradiated Filter Disks and Simulated SRS Waste (open access)

Pilot-Scale Testing of a Rotary Microfilter with Irradiated Filter Disks and Simulated SRS Waste

The processing rate of the Actinide Removal Project (ARP) is limited by the flow rate of the solid-liquid separation process. If the Department of Energy, DOE, could identify and develop a solid- liquid separation technology with a higher filter flux, they could increase the throughput of the Actinide Removal Project and complete treating that fraction of the waste stream in a shorter time, with a significant reduction in life-cycle cost. Savannah River Technology Center personnel identified the rotary microfilter as a technology that could significantly increase filter flux, with improvements of as much as 10X over the 0.5 micron crossflow filter and 5X over the 0.1 micron crossflow filter. The Savannah River Technology Center received funding from the DOE-HQ, Office of Cleanup Technologies, to evaluate and develop the rotary microfilter for radioactive service at the Savannah River Site. The authors performed pilot-scale simulant filtration tests with irradiated filter disks. They employed three types of filter disks for the tests (0.5 m stainless steel, 0.1 m stainless steel, and 0.1 m ceramic/stainless steel). They analyzed the filter's structural material, Ryton(R) for hardness, and irradiated the entire disk with an estimated 2.5-5 year (83-165 MRad) radiation dose. They measured the hardness of …
Date: January 20, 2004
Creator: POIRIER, MICHAELR.
Object Type: Report
System: The UNT Digital Library
ASSESSMENT OF GENOTOXIC ACTIVITY OF PETROLEUM HYDROCARBON-BIOREMEDIATED SOIL (open access)

ASSESSMENT OF GENOTOXIC ACTIVITY OF PETROLEUM HYDROCARBON-BIOREMEDIATED SOIL

The relationship between toxicity and soil contamination must be understood to develop reliable indicators of environmental restoration for bioremediation. Two bacterial rapid bioassays: SOS chromotest and umu-test with and without metabolic activation (S-9 mixture) were used to evaluate genotoxicity of petroleum hydrocarbon-contaminated soil following bioremediation treatment. The soil was taken from an engineered biopile at the Czor Polish oil refinery. The bioremediation process in the biopile lasted 4 years, and the toxicity measurements were done after this treatment. Carcinogens detected in the soil, polyaromatic hydrocarbons (PAHs), were reduced to low concentrations (2 mg/kg dry wt) by the bioremediation process. Genotoxicity was not observed for soils tested with and without metabolic activation by a liver homogenate (S-9 mixture). However, umu-test was more sensitive than SOS-chromotest in the analysis of petroleum hydrocarbon-bioremediated soil. Analytical results of soil used in the bioassays confirmed that the bioremediation process reduced 81 percent of the petroleum hydrocarbons including PAHs. We conclude that the combined test systems employed in this study are useful tools for the genotoxic examination of remediated petroleum hydrocarbon-contaminated soil.
Date: October 20, 2004
Creator: BRIGMON, ROBIN
Object Type: Report
System: The UNT Digital Library
Reaction-Forming Method for Producing Near Net-Shape Refractory Metal Carbides (open access)

Reaction-Forming Method for Producing Near Net-Shape Refractory Metal Carbides

A method for reaction forming refractory metal carbides. The method involves the fabrication of a glassy carbon preform by casting an organic, resin-based liquid mixture into a mold and subsequently heat treating it in two steps, which cures and pyrolizes the resin resulting in a porous carbon preform. By varying the amounts of the constituents in the organic, resin-based liquid mixture, control over the density of the carbon preform is obtained. Control of the density and microstructure of the carbon preform allows for determination of the microstructure and properties of the refractory metal carbide material produced. The glassy carbon preform is placed on a bed of refractory metal or refractory metal--silicon alloy. The pieces are heated above the melting point of the metal or alloy. The molten metal wicks inside the porous carbon preform and reacts, forming the refractory metal carbide or refractory metal carbide plus a minor secondary phase.
Date: July 20, 2004
Creator: Palmisiano, Marc N.; Jakubenas, Kevin J. & Baranwal, Rita
Object Type: Patent
System: The UNT Digital Library
Subcellular Proteomic Analysis of Host-Pathogen Interactions Using Human Monocytes Exposed to Yersinia Pestis and Yersinia Pseudotuberculosis (open access)

Subcellular Proteomic Analysis of Host-Pathogen Interactions Using Human Monocytes Exposed to Yersinia Pestis and Yersinia Pseudotuberculosis

Yersinia pestis, the etiological agent of plague, is of concern to human health both from an infectious disease and a civilian biodefense perspective. While Y. pestis and Y. pseudotuberculosis share more than 90% DNA homology, they have significantly different clinical manifestations. Plague is often fatal if untreated, yet Y. pseudotuberculosis causes severe intestinal distress and is rarely fatal. A better understanding of host response to these closely related pathogens may help explain the different mechanisms of virulence and pathogenesis that result in such different clinical outcomes. The aim of this study was to characterize host protein expression changes in human monocyte-like U937 cells after exposure to Y. pestis and Y. pseudotuberculosis. In order to gain global proteomic coverage of host response, proteins from cytoplasmic, nuclear and membrane fractions of host cells were studied by 2-dimensional differential gel electrophoresis (2-D DIGE) and relative protein expression differences were quantitated. Differentially expressed proteins, with at least 1.5 fold expression changes and p values of 0.01 or less, were identified by MALDI-MS or LC/MS/MS. With these criteria, differential expression was detected in 16 human proteins after Y. pestis exposure and 13 human proteins after Y. pseudotuberculosis exposure, of which only two of the differentially …
Date: May 20, 2004
Creator: Zhang, C. G.; Gonzales, A. D.; Choi, M. W.; Chromy, B. A.; Fitch, J. P. & McCutchen-Maloney, S. L.
Object Type: Article
System: The UNT Digital Library
Identifying performance bottlenecks on modern microarchitectures using an adaptable probe (open access)

Identifying performance bottlenecks on modern microarchitectures using an adaptable probe

The gap between peak and delivered performance for scientific applications running on microprocessor-based systems has grown considerably in recent years. The inability to achieve the desired performance even on a single processor is often attributed to an inadequate memory system, but without identification or quantification of a specific bottleneck. In this work, we use an adaptable synthetic benchmark to isolate application characteristics that cause a significant drop in performance, giving application programmers and architects information about possible optimizations. Our adaptable probe, called sqmat, uses only four parameters to capture key characteristics of scientific workloads: working-set size, computational intensity, indirection, and irregularity. This paper describes the implementation of sqmat and uses its tunable parameters to evaluate four leading 64-bit microprocessors that are popular building blocks for current high performance systems: Intel Itanium2, AMD Opteron, IBM Power3, and IBM Power4.
Date: January 20, 2004
Creator: Griem, Gorden; Oliker, Leonid; Shalf, John & Yelick, Katherine
Object Type: Article
System: The UNT Digital Library
Reconstruction Of Regulatory And Metabolic Pathways InMetal-Reducing delta-Proteobacteria (open access)

Reconstruction Of Regulatory And Metabolic Pathways InMetal-Reducing delta-Proteobacteria

Relatively little is known about the genetic basis for the unique physiology of metal-reducing genera in the delta subgroup of the proteobacteria. The recent availability of complete finished or draft-quality genome sequences for seven representatives allowed us to investigate the genetic and regulatory factors in a number of key pathways involved in the biosynthesis of building blocks and cofactors, metal-ion homeostasis, stress response, and energy metabolism using a combination of regulatory sequence detection and analysis of genomic context. In the genomes of delta-proteobacteria, we identified candidate binding sites for four regulators of known specificity (BirA, CooA, HrcA,sigma-32), four types of metabolite-binding riboswitches (RFN-, THI-,B12-elements and S-box), and new binding sites for the FUR, ModE, NikR,PerR, and ZUR transcription factors, as well as for the previously uncharacterized factors HcpR and LysX. After reconstruction of the corresponding metabolic pathways and regulatory interactions, we identified possible functions for a large number of previously uncharacterized genes covering a wide range of cellular functions. Phylogenetically diverse delta-proteobacteria appear to have homologous regulatory components. This study for the first time demonstrates the adaptability of the comparative genomic approach to de novo reconstruction of a regulatory network in a poorly studied taxonomic group of bacteria. Recent efforts …
Date: September 20, 2004
Creator: Rodionov, Dmitry A.; Dubchak, Inna; Arkin, Adam; Alm, Eric & Gelfand,Mikhail S.
Object Type: Article
System: The UNT Digital Library
Multidisciplinary Imaging of Rock Properties in Carbonate Reservoirs for Flow-Unit Targeting (open access)

Multidisciplinary Imaging of Rock Properties in Carbonate Reservoirs for Flow-Unit Targeting

Our analysis and imaging of reservoir properties at the Fullerton Clear Fork field (Figure 1) is in its final stages. Major accomplishments during the past 6 months include: (1) characterization of facies and cyclicity in cores, (2) correlation of cycles and sequences using core-calibrated wireline logs, (3) calculation and modeling of wireline porosity, (4) analysis of new cores for conventional and special core analysis data, (5) construction of full-field reservoir model, and (6) revision of 3D seismic inversion of reservoir porosity and permeability. One activity has been eliminated from the originally proposed tasks. Task 3 (Characterization and Modeling of Rock Mechanics and Fractures) has been deleted because we have determined that fractures are not significant contributing in the reservoir under study. A second project extension has been asked for to extend the project until 7/31/04. Remaining project activities are: (1) interpretation and synthesis of fieldwide data, (2) preparation of 3D virtual reality demonstrations of reservoir model and attributes, (3) transfer of working data sets to the operator for reservoir implementation and decision-making, and (4) preparation and distribution of final reports.
Date: July 20, 2004
Creator: Ruppel, Stephen C.
Object Type: Report
System: The UNT Digital Library
SOLID OXIDE FUEL CELL MANUFACTURING COST MODEL: SIMULATING RELATIONSHIPS BETWEEN PERFORMANCE, MANUFACTURING, AND COST OF PRODUCTION (open access)

SOLID OXIDE FUEL CELL MANUFACTURING COST MODEL: SIMULATING RELATIONSHIPS BETWEEN PERFORMANCE, MANUFACTURING, AND COST OF PRODUCTION

The successful commercialization of fuel cells will depend on the achievement of competitive system costs and efficiencies. System cost directly impacts the capital equipment component of cost of electricity (COE) and is a major contributor to the O and M component. The replacement costs for equipment (also heavily influenced by stack life) is generally a major contributor to O and M costs. In this project, they worked with the SECA industrial teams to estimate the impact of general manufacturing issues of interest on stack cost using an activities-based cost model for anode-supported planar SOFC stacks with metallic interconnects. An earlier model developed for NETL for anode supported planar SOFCs was enhanced by a linkage to a performance/thermal/mechanical model, by addition of Quality Control steps to the process flow with specific characterization methods, and by assessment of economies of scale. The 3-dimensional adiabatic performance model was used to calculate the average power density for the assumed geometry and operating conditions (i.e., inlet and exhaust temperatures, utilization, and fuel composition) based on publicly available polarizations curves. The SECA team provided guidance on what manufacturing and design issues should be assessed in this Phase I demonstration of cost modeling capabilities. They considered the …
Date: April 20, 2004
Creator: Carlson, Eric J.; Yang, Yong & Fulton, Chandler
Object Type: Report
System: The UNT Digital Library