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The protein conformational basis of isoflavone biosynthesis (open access)

The protein conformational basis of isoflavone biosynthesis

Authors of the article assert that isoflavonoids play important roles in plant defense and also exhibit a range of mammalian health-promoting activities. They emphasize that understanding the structural basis of isoflavone biosynthesis will facilitate the engineering of new bioactive isoflavonoids.
Date: November 15, 2022
Creator: Wang, Xiaoqiang; Pan, Haiyun; Sagurthi, Someswar; Paris, Vincent; Zhuo, Chunliu & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network (open access)

Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network

This article proposes that the integration of these signals is mediated through pulses of gene expression that are coordinated through out the plant in a systemic manner by the ROS/Ca⁺² waves.
Date: November 3, 2018
Creator: Kollist, Hannes; Zandalinas, Sara I.; Sengupta, Soham; Nuhkat, Maris; Kangasjärvi, Jaakko & Mittler, Ron
Object Type: Article
System: The UNT Digital Library
Reconstructing horizontal gene flow network to understand prokaryotic evolution (open access)

Reconstructing horizontal gene flow network to understand prokaryotic evolution

Article says that horizontal gene transfer (HGT) is a major source of phenotypic innovation and a mechanism of niche adaptation in prokaryotes. Methods for detecting HGT can be classified into phylogenetic-based and parametric or composition-based approaches, so authors exploited the complementary strengths of both the approaches to construct a high confidence horizontal gene flow network. The scale-free horizontal gene flow network presented here provides new insights into modes of transfer for the exchange of genetic information and also illuminates differential gene flow across phyla.
Date: November 30, 2022
Creator: Sungupta, Soham & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
River Notes: A Natural and Human History of the COlorado (open access)

River Notes: A Natural and Human History of the COlorado

This article reviews the book "River Notes: A Natural and Human History of the Colorado" by Wade Davis.
Date: November 4, 2013
Creator: La Point, Thomas W., 1949-
Object Type: Review
System: The UNT Digital Library
RNaseH-mediated simultaneous piggyback knockdown of multiple genes in adult zebrafish (open access)

RNaseH-mediated simultaneous piggyback knockdown of multiple genes in adult zebrafish

This article tests if it is possible to piggyback more than one antisense deoxyoligonucleotide (dO) with one vivo morpholino (VMO). The authors previously developed a piggyback knockdown method that was used to knockdown genes in adult zebrafish. In this article, the authors develop a method to knockdown three genes at one time, and by increasing the concentration of VMO by twofold, could knockdown six genes simultaneously. These multiple gene knockdowns will not only increase the efficiency of the method in whole genome-wide knockdowns but will also be useful to study multifactorial disorders.
Date: November 19, 2020
Creator: Raman, Revathi; Ryon, Mia & Jagadeeswaran, Pudur
Object Type: Article
System: The UNT Digital Library
Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans (open access)

Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans

This article identifies that an rRNA released in hemolysis activates clotting in human and zebrafish plasma. Furthermore, it shows that fish Hgfac plays a role in rRNA-mediated activation of coagulation.
Date: November 17, 2021
Creator: Alharbi, Abdulmajeed; Iyer, Neha; Al Qaryoute, Ayah; Raman, Revathi; Burks, David J.; Azad, Rajeev K. et al.
Object Type: Article
System: The UNT Digital Library
Secreted Frizzled Related Proteins: Implications in Cancers (open access)

Secreted Frizzled Related Proteins: Implications in Cancers

Article on secreted frizzled related proteins and implications in cancers.
Date: November 30, 2013
Creator: Surana, Rohit; Sikka, Sakshi; Cai, Wanpei; Shin, Eun Myoung; Warrier, Sudha R.; Tan, Hong Jie Gabriel et al.
Object Type: Article
System: The UNT Digital Library
Silicon versus Superbug: Assessing Machine Learning's Role in the Fight against Antimicrobial Resistance (open access)

Silicon versus Superbug: Assessing Machine Learning's Role in the Fight against Antimicrobial Resistance

Article describes how, in his 1945 Nobel Prize acceptance speech, Sir Alexander Fleming warned of antimicrobial resistance (AMR) if the necessary precautions were not taken diligently. This paper explores the applications of ML in predicting and understanding AMR, highlighting its potential in revolutionizing healthcare practices.
Date: November 8, 2023
Creator: Coxe, Tallon & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Simvastatin sensitizes human gastric cancer xenograft in nude mice to capecitabine by suppressing nuclear factor-kappa B-regulated gene products (open access)

Simvastatin sensitizes human gastric cancer xenograft in nude mice to capecitabine by suppressing nuclear factor-kappa B-regulated gene products

Article on simvastatin sensitizes human gastric cancer xenograft in nude mice to capecitabine by suppressing nuclear factor-kappa B-regulated gene products.
Date: November 14, 2013
Creator: Manu, Kanjoormana Aryan; Shanmugam, Muthu K.; Li, Feng; Chen, Luxi; Siveen, Kodappully Sivaraman; Ahn, Kwang Seok et al.
Object Type: Article
System: The UNT Digital Library
Targeted down-regulation of cytochrome P450 enzymes for forage quality improvement in alfalfa (Medicago sativa L.) (open access)

Targeted down-regulation of cytochrome P450 enzymes for forage quality improvement in alfalfa (Medicago sativa L.)

Article on targeted down-regulation of cytochrome P450 enzymes for forage quality improvement in alfalfa (Medicago sativa L.).
Date: November 15, 2005
Creator: Reddy, M. S. Srinivasa; Chen, Fang; Shadle, Gail L.; Jackson, Lisa A.; Aljoe, Hugh & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Targeting Peroxisome Proliferator-Activated Receptor-Gamma (PPARγ) Signaling Cascade for the Prevention and Treatment of Prostate Cancer (open access)

Targeting Peroxisome Proliferator-Activated Receptor-Gamma (PPARγ) Signaling Cascade for the Prevention and Treatment of Prostate Cancer

Article reviews PPARγ as an antitumor agent and summarizes the antineoplastic effects of PPARγ agonists in prostate cancer.
Date: November 14, 2012
Creator: Sikka, Sakshi; Chen, Luxi; Sethi, Gautam & Kumar, Alan Prem
Object Type: Article
System: The UNT Digital Library
Terpene Biosynthesis in Glandular Trichomes of Hop (open access)

Terpene Biosynthesis in Glandular Trichomes of Hop

Article on terpene biosynthesis in glandular trichomes of hop.
Date: November 2008
Creator: Wang, Guodong; Tian, Li; Aziz, Naveed; Broun, Pierre; Dai, Xinbin; He, Ji et al.
Object Type: Article
System: The UNT Digital Library
Transcriptomic profiling of miR-203a inhibitor and miR-34b-injected zebrafish (Danio rerio) validates oil-induced neurological, cardiovascular and eye toxicity response pathways (open access)

Transcriptomic profiling of miR-203a inhibitor and miR-34b-injected zebrafish (Danio rerio) validates oil-induced neurological, cardiovascular and eye toxicity response pathways

Article discusses how the global sequencing of microRNA (miRNA; miR) and integration to downstream mRNA expression profiles in early life stages (ELS) of fish following exposure to crude oil determined consistently dysregulated miRNAs regardless of the oil source or fish species. The overlay of differentially expressed miRNAs and mRNAs into in silico software determined that the key roles of these miRNAs were predicted to be involved in cardiovascular, neurological and visually-mediated pathways.
Date: November 21, 2022
Creator: Maguson, Jason T.; Leads, Rachel R.; McGruer, Victoria; Qian, Le; Tanabe, Philip; Roberts, Aaron P. et al.
Object Type: Article
System: The UNT Digital Library
The Use of Genetics for the Management of a Recovering Population: Temporal Assessment of Migratory Peregrine Falcons in North America (open access)

The Use of Genetics for the Management of a Recovering Population: Temporal Assessment of Migratory Peregrine Falcons in North America

Article on the use of genetics for the management of a recovering population and a temporal assessment of migratory peregrine falcons in North America.
Date: November 18, 2010
Creator: Johnson, Jeff A.; Talbot, Sandra Looman; Sage, George K.; Burnham, Kurt K.; Brown, Joseph W.; Maechtle, Tom L. et al.
Object Type: Article
System: The UNT Digital Library
Using Machine Learning to Predict Genes Underlying Differentiation of Multipartite and Unipartite Traits in Bacteria (open access)

Using Machine Learning to Predict Genes Underlying Differentiation of Multipartite and Unipartite Traits in Bacteria

Article describes how, since the discovery of the second chromosome in the Rhodobacter spaeroides 2.4.1 in 1989 and the revelation of gene sequences, multipartite genomes have been reported in over three hundred bacterial species under nine different phyla. In this study, the authors have attempted to leverage machine learning as a means to identify the genetic factors that underlie the differentiation of bacteria with multipartite and unipartite genomes.
Date: November 13, 2023
Creator: Almalki, Fatemah; Sunuwar, Janak & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Vanillin Biosynthesis - Not as Simple as it Seem? (open access)

Vanillin Biosynthesis - Not as Simple as it Seem?

Book chapter on vanillin biosynthesis. The author gives an introduction to vanillin biosynthesis, the multiple pathways to vanillin, and the way forward.
Date: November 23, 2010
Creator: Dixon, R. A.
Object Type: Book Chapter
System: The UNT Digital Library
A WD40 Repeat Protein from Medicago truncatula Is Necessary for Tissue-Specific Anthocyanin and Proanthocyanidin Biosynthesis But Not for Trichome Development (open access)

A WD40 Repeat Protein from Medicago truncatula Is Necessary for Tissue-Specific Anthocyanin and Proanthocyanidin Biosynthesis But Not for Trichome Development

Article discussing how WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development.
Date: November 2009
Creator: Pang, Yongzhen; Wenger, Jonathan P.; Saathoff, Katie; Peel, Gregory J.; Wen, Jiangqi; Huhman, David et al.
Object Type: Article
System: The UNT Digital Library
We Need Better Understanding About Functional Diversity and Vulnerability of Tropical Freshwater Fishes (open access)

We Need Better Understanding About Functional Diversity and Vulnerability of Tropical Freshwater Fishes

This commentary extends a discussion initiated by Toussaint et al. (Sci Rep 6:22125, 2016) concerning the relationship between global patterns of freshwater fish functional diversity (FD) and its vulnerability to human impacts.
Date: November 19, 2016
Creator: Vitule, Jean R. S.; Agostinho, Angela A.; Azevedo-Santos, Valter M.; Daga, Vanessa S.; Darwall, William R. T.; Fitzgerald, Daniel B. et al.
Object Type: Article
System: The UNT Digital Library
Were domestic camelids present on the prehispanic South American agricultural frontier? An ancient DNA study (open access)

Were domestic camelids present on the prehispanic South American agricultural frontier? An ancient DNA study

Article testing the hypothesis that domesticated camelids occurred in prehispanic, southern Mendoza through analysis of ancient DNA.
Date: November 5, 2020
Creator: Johnson, Jeff A.; Kim, Tracy; Wolverton, Steven J.; Gil, Adolfo Fabian; Abbona, Cinthia Carolina & Adolfo, Gustavo Neme
Object Type: Article
System: The UNT Digital Library
Xenopus and the art of oxygen maintenance (open access)

Xenopus and the art of oxygen maintenance

This column article discusses the impact of Robert Boutillier and Graham Shelton's 1986 Journal of Experimental Biology paper "Gas exchange, storage and transport in voluntarily diving Xenopus laevis."
Date: November 15, 2017
Creator: Tattersall, Glenn & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features (open access)

xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

Article discussing the eXtensible Genome Data Broker (xGDB) and an open-source computational infrastructure for the integrated evaluation and anlysis of genome features.
Date: November 20, 2006
Creator: Schlueter, Shannon D.; Wilkerson, Matthew D.; Dong, Qunfeng & Brendel, Volker
Object Type: Article
System: The UNT Digital Library
Zebrafish Genetics: Functional Genomics captions transcript

Zebrafish Genetics: Functional Genomics

Video recording of Dr. Pudur Jagadeeswaran's presentation, "Zebrafish Genetics: Functional Genomics." It focuses on blood coagulation pathways in studying functional genomics. It was presented at the Transdisciplinary Ancestral Genomic Research Investigations (TAGRI) II Conference held online November 5-6, 2021.
Date: November 5, 2021
Creator: Jagadeeswaran, Pudur
Object Type: Video
System: The UNT Digital Library