N-acylethanolamide metabolizing enzymes are upregulated in human neural progenitor-derived neurons exposed to sub-lethal oxidative stress (open access)

N-acylethanolamide metabolizing enzymes are upregulated in human neural progenitor-derived neurons exposed to sub-lethal oxidative stress

Article is a study determining whether ReN cells, a superior cell model system for studying neurodevelopment, differentiation, and neuroprotection, express proteins involved in canonical eCB NAE signaling and whether oxidative stress can induce their expression. This study is a first step toward determining how oxidative stress affects CB1, CB2, FAAH, NAAA, and NAPE-PLD expression and their potential defense against oxidative stress.
Date: August 8, 2022
Creator: Duncan, Scott R.; Riordan, Sean M.; Hall, Conner W.; Payne, Andrew J.; Chapman, Kent Dean & Koulen, Peter
Object Type: Article
System: The UNT Digital Library
Air pollution and endocrine disruptors induce human microbiome imbalances: A systematic review of recent evidence and possible biological mechanisms (open access)

Air pollution and endocrine disruptors induce human microbiome imbalances: A systematic review of recent evidence and possible biological mechanisms

Article presents a systematic review examining the scientific evidence on the effect of environmental toxicants, air pollutants and endocrine disruptors (EDCs), on compositional and diversity of human microbiota.
Date: February 11, 2022
Creator: Mousavi, Sayed Esmaeil; Delgado-Saborit, Juana Maria; Adivi, Anna; Pauwels, Sara & Godderis, Lode
Object Type: Article
System: The UNT Digital Library
Analysis of transcribed sequences from young and mature zebrafish thrombocytes (open access)

Analysis of transcribed sequences from young and mature zebrafish thrombocytes

Article studying thrombocyte function and development in adult zebrafish. The authors performed single-cell RNA sequencing of the young and mature zebrafish thrombocytes and compared the two datasets for young and mature thrombocyte transcripts.
Date: September 19, 2021
Creator: Fallatah, Weam; De, Ronika; Burks, David J.; Azad, Rajeev K. & Jagadeeswaran, Pudur
Object Type: Article
System: The UNT Digital Library
The Arabidopsis gene co-expression network (open access)

The Arabidopsis gene co-expression network

Article presents an Arabidopsis gene co-expression network constructed using RNA-Seq datasets, which will serve as a useful resource for the Arabidopsis research community to gain insights into Arabidopsis gene interactions and functions.
Date: April 26, 2022
Creator: Burks, David J.; Sengupta, Soham; De, Ronika; Mittler, Ron & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Are Tourists Facilitators of the Movement of Free-Ranging Dogs? (open access)

Are Tourists Facilitators of the Movement of Free-Ranging Dogs?

Article discusses how free-ranging dogs are of major conservation concern worldwide as they negatively affect wildlife. Although scientists and governmental agencies are aware of the problem and responsible pet ownership strategies are beginning to be implemented, the tourism sector must be explicitly integrated into wildlife conservation management strategies.
Date: December 16, 2022
Creator: Schüttler, Elke & Jiménez, Jaime E.
Object Type: Article
System: The UNT Digital Library
Better together: Protein partnerships for lineage-specific oil accumulation (open access)

Better together: Protein partnerships for lineage-specific oil accumulation

Article reviews recent evidence that protein–protein interactions in each of the three major phases of oil formation appear to have profound effects on specialized oil accumulation. This article is part of the special issue: Physiology and metabolism (2022).
Date: February 24, 2022
Creator: Busta, Lucas; Chapman, Kent Dean & Cahoon, Edgar B.
Object Type: Article
System: The UNT Digital Library
CancerNet: a unified deep learning network for pan‑cancer diagnostics (open access)

CancerNet: a unified deep learning network for pan‑cancer diagnostics

Article states that despite remarkable advances in cancer research, cancer remains one of the leading causes of death worldwide. The author's proposed framework for cancer diagnostics detects cancers and their tissues of origin using a unified model of cancers encompassing 33 cancers represented in The Cancer Genome Atlas. Their model exploits the learned features of different cancers reflected in the respective dysregulated epigenomes, holding a great promise in early cancer detection.
Date: June 13, 2022
Creator: Gore, Steven & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Cascading effects of COVID-19 on population mobility and air quality: An exploration including place characteristics using geovisualization (open access)

Cascading effects of COVID-19 on population mobility and air quality: An exploration including place characteristics using geovisualization

Article examining the population mobility and air quality before and after the lockdown (mandated restriction of activity) during the public health response to COVID-19. This article is part of the Special Issue on COVID-19.
Date: January 22, 2022
Creator: Atkinson, Samuel F.; Kala, Abhishek K. & Tiwari, Chetan
Object Type: Article
System: The UNT Digital Library
Case report: Early-onset osteoporosis in a patient carrying a novel heterozygous variant of the WNT1 gene (open access)

Case report: Early-onset osteoporosis in a patient carrying a novel heterozygous variant of the WNT1 gene

Article presents a case study of a 35 year-old Caucasian woman who experienced multiple vertebral fractures two months after her second pregnancy. The results suggest a potential role of heterozygous WNT1 variants in the pathogenesis of early-onset osteoporosis. The authors suggest that teriparatide is one of the most appropriate available therapies for such cases.
Date: August 8, 2022
Creator: Campopiano, Maria Cristina; Fogli, Antonella; Michelucci, Angela; Mazoni, Laura; Longo, Antonella; Borsari, Simona et al.
Object Type: Article
System: The UNT Digital Library
Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity (open access)

Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity

Article investigating whether the EPDs of PAD4 and SAG101 contribute to EDS1 dimer functions.
Date: October 27, 2021
Creator: Dongus, Joram A.; Bhandari, Deepak D.; Penner, Eva; Lapin, Dmitry; Stolze, Sara C.; Harzen, Anne et al.
Object Type: Article
System: The UNT Digital Library
The Cluster Transfer Function of AtNEET Supports the Ferredoxin–Thioredoxin Network of Plant Cells (open access)

The Cluster Transfer Function of AtNEET Supports the Ferredoxin–Thioredoxin Network of Plant Cells

This article develops an inducible expression system to study AtNEET function in mature plants using a time-course proteomics approach. The authors report that the suppression of AtNEET cluster transfer function results in drastic changes in the expression of different members of the ferredoxin (Fd), Fd-thioredoxin (TRX) reductase (FTR), and TRX network of Arabidopsis, as well as in cytosolic cluster assembly proteins.
Date: August 6, 2022
Creator: Zandalinas, Sara I.; Song, Luhua; Nechushtai, Rachel; Mendoza-CĂłzatl, David & Mittler, Ron
Object Type: Article
System: The UNT Digital Library
Comparing Methods of Defining Priority Areas for Greater Sage-Grouse (open access)

Comparing Methods of Defining Priority Areas for Greater Sage-Grouse

Article comparing priority areas for wildlife species using different methods and data types. The authors used resource selection function (RSF) models to predict high priority areas and compared this to priority areas developed using two alternative methods: (1) modified conservation buffer, and (2) utilization distribution (UD) models.
Date: July 7, 2022
Creator: Parsons, Lindsey; Jenks, Jonathan; Runia, Travis & Gregory, Andrew
Object Type: Article
System: The UNT Digital Library
Complete Genome Sequences of the Novel Cluster BP Phages Infecting Streptomyces sanglieri, AxeJC, Cumberbatch, Eastland, Eklok, HFrancette, Ignacio, Piccadilly, and Vondra (open access)

Complete Genome Sequences of the Novel Cluster BP Phages Infecting Streptomyces sanglieri, AxeJC, Cumberbatch, Eastland, Eklok, HFrancette, Ignacio, Piccadilly, and Vondra

Article describes the Streptomyces sanglieri bacteriophages AxeJC, Cumberbatch, Eastland,Eklok, HFrancette, Ignacio, Piccadilly, and Vondra form a novel actinobacteriophage cluster,BP. These siphoviruses have circularly permuted genomes with an average size of 37,700 bp and a GC content of 71%. Each genome contains approximately 58 protein-coding genes, with no tRNAs.
Date: September 14, 2022
Creator: Nath, Sreemoye; Sulaiman, Ahmad; Maneekul, Jindanuch; Bhuiyan, Swapan; Layton, Sonya R.; Menchaca, Carolina et al.
Object Type: Article
System: The UNT Digital Library
The complexities of proanthocyanidin biosynthesis and its regulation in plants (open access)

The complexities of proanthocyanidin biosynthesis and its regulation in plants

Article describes how proanthocyanidins (PAs) are natural flavan-3-ol polymers that contribute protection to plants under biotic and abiotic stress, benefits to human health, and bitterness and astringency to food products. This review extends the conventional understanding with recent findings that provide new insights to address lingering questions and focus strategies for manipulating PA traits in plants.
Date: November 26, 2022
Creator: Yu, Keji; Song, Yushuang; Lin, Jinxing & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
A conserved oxalyl-coenzyme A decarboxylase in oxalate catabolism (open access)

A conserved oxalyl-coenzyme A decarboxylase in oxalate catabolism

Article presents research on oxalate catabolism in plants.
Date: May 5, 2022
Creator: Cheng, Ninghui; Paris, Vincent; Rao, Xiaolan; Wang, Xiaoqiang & Nakata, Paul A.
Object Type: Article
System: The UNT Digital Library
Development of advanced biocatalyst tools and resources to enable biogas-based biomanufacturing (open access)

Development of advanced biocatalyst tools and resources to enable biogas-based biomanufacturing

Data management plan for the grant, "Development of advanced biocatalyst tools and resources to enable biogas-based biomanufacturing."
Date: 2022-08-15/2025-07-31
Creator: Henard, Calvin
Object Type: Text
System: The UNT Digital Library
Developmental changes in lignin composition are driven by both monolignol supply and laccase specificity (open access)

Developmental changes in lignin composition are driven by both monolignol supply and laccase specificity

Article proposes a model in which, during C-lignin biosynthesis, caffeyl alcohol noncompetitively inhibits oxidation of coniferyl alcohol by cell wall laccases, a process that might limit movement of coniferyl alcohol to the apoplast.
Date: October 13, 2021
Creator: Zhou, Chunliu; Wang, Xin; Docampo-Palacios, Maite; Sanders, Brian C.; Engle, Nancy L.; Tschaplinski, Timothy J. et al.
Object Type: Article
System: The UNT Digital Library
Dual Mechanisms of Coniferyl Alcohol in Phenylpropanoid Pathway Regulation (open access)

Dual Mechanisms of Coniferyl Alcohol in Phenylpropanoid Pathway Regulation

This article reports that a major monomer unit of the lignin polymer can function as a signal molecule to trigger proteolysis of the enzyme L-phenylalanine ammonia-lyase, the entry point into the lignin biosynthetic pathway, and feedback regulate the expression levels of lignin biosynthetic genes.
Date: May 6, 2022
Creator: Guan, Mengling; Li, Changxuan; Shan, Xiaotong; Chen, Fang; Wang, Shufang; Dixon, R. A. et al.
Object Type: Article
System: The UNT Digital Library
Editorial: Lipid metabolism and membrane structure in plant biotic interactions (open access)

Editorial: Lipid metabolism and membrane structure in plant biotic interactions

Article discusses how Lipid bilayers represent the interface between cells (or organelles) and their environment. Authors claim that this special topic brings together new reports on several of these lipid classes to shed light on the impacts of plant lipid metabolism and membrane organization on plant immunity.
Date: December 6, 2022
Creator: Goggin, Fiona L.; Shah, Jyoti & Gillaspy, Glenda
Object Type: Article
System: The UNT Digital Library
Effective Mechanisms for Improving Seed Oil Production in Pennycress (Thlaspi arvense L.) Highlighted by Integration of Comparative Metabolomics and Transcriptomics (open access)

Effective Mechanisms for Improving Seed Oil Production in Pennycress (Thlaspi arvense L.) Highlighted by Integration of Comparative Metabolomics and Transcriptomics

Article presents comparative biomass, metabolomic, and transcriptomic analyses between a high oil accession (HO) and low oil accession (LO) of pennycress to assess potential factors required to optimize oil content.
Date: July 14, 2022
Creator: Johnston, Christopher; GarcĂ­a Navarrete, Tatiana; Ortiz, Emmanuel; Romsdahl, Trevor B.; Guzha, Athanas; Chapman, Kent Dean et al.
Object Type: Article
System: The UNT Digital Library
Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value (open access)

Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value

Data management plan for the grant "Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value." Cotton is an important oilseed crop in the U.S. economy. Cotton seed and other vegetative tissues produce unusual chemicals called cyclic fatty acids that have wide-ranging potential uses from high-value industrial properties to nutrition-oriented uses. This project focuses on identifying genes that contribute to the production and storage of these high value bioproducts.
Date: 2022-10-15/2025-10-14
Creator: Horn, Patrick J.
Object Type: Text
System: The UNT Digital Library
Encroachment order and spatial patterns of broad-leaf tree species in the naturalization of a Cunninghamia lanceolata plantation (open access)

Encroachment order and spatial patterns of broad-leaf tree species in the naturalization of a Cunninghamia lanceolata plantation

Authors of the article state that the aim of this study was to understand the encroachment order, spatial patterns, interspecific associations, and species diversity of a Cunninghamia lanceolata plantation and to provide context for how to improve the spatial structure of C. lanceolata plantations. Their results show that the encroachment of broad-leaf trees into the C. lanceolata plantation followed a clear successional sequence of tree community assembly: intolerant tree species encroachment first, such as Alniphyllum fortunei and Liquidambar formosana, encroached; neutral tree species then encroachment, such as Daphniphyllum oldhamii and Schima superba, and shade-tolerant tree species encroachment last, such as Castanopsis eyrei and Castanopsis tibetana.
Date: August 3, 2022
Creator: Zeng, Xiaoxia; Chen, Lin; Compson, Zacchaeus Greg; Li, Jiejun; Peng, Qiaohua; Gong, Chao et al.
Object Type: Article
System: The UNT Digital Library
Environmental filtering of macroinvertebrate traits influences ecosystem functioning in a large river floodplain (open access)

Environmental filtering of macroinvertebrate traits influences ecosystem functioning in a large river floodplain

Article describes how the biodiversity–ecosystem function hypothesis postulates that higher biodiversity is correlated with faster ecosystem process rates and increased ecosystem stability in fluctuating environments. The authors examined linkages among floodplain wetland habitats, invertebrate communities and their associated traits, and ecosystem function across 60 sites within the floodplain wetlands of the lower Wolastoq, Saint John River, New Brunswick.
Date: August 20, 2022
Creator: Rideout, Natalie K.; Compson, Zacchaeus Greg; Monk, Wendy A.; Brunce, Meghann R.; Hajibabaei, Mehrdad; Porter, Teresita M. et al.
Object Type: Article
System: The UNT Digital Library
Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata) (open access)

Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata)

Article describes how kudzu produces both O- and C-glycosylated isoflavones, with puerarin (C-glucosyl daidzein) as an important bioactive compound. The authors go on to explain how expression of recombinant UGTs in Escherichia coli and candidate C-glycosyltransferases in Medicago truncatula were used to explore substrate specificities, and gene silencing of UGT and key isoflavone biosynthetic genes in kudzu hairy roots employed to test hypotheses concerning the substrate(s) for C-glycosylation.
Date: September 2, 2022
Creator: Adolfo, Laci M.; Burks, David J.; Rao, Xiaolan; Alvarez-Hernandez, Anislay & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library