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Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data (open access)

Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data

Article describes how taxonomic profiling of ancient metagenomic samples is challenging due to the accumulation of specific damage patterns on DNA over time. The authors performed a comprehensive evaluation on simulated metagenomes representing human dental calculus microbiome, with the level of DNA damage successively raised to mimic modern to ancient metagenomes.
Date: October 2, 2023
Creator: Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Beyond the Chicken: Alternative Avian Models for Developmental Physiological Research (open access)

Beyond the Chicken: Alternative Avian Models for Developmental Physiological Research

This article is a review examining the characteristics that make an animal model attractive for developmental research and explores opportunities presented by the embryo to adult continuum of alternative bird models including quail, ratites, songbirds, birds of prey, and corvids.
Date: October 21, 2021
Creator: Flores-Santin, Josele & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Biosynthesis and genetic engineering of proanthocyanidins and (iso)flavonoids (open access)

Biosynthesis and genetic engineering of proanthocyanidins and (iso)flavonoids

Article on biosynthesis and genetic engineering of proanthocyanidins and (iso)flavonoids.
Date: October 2008
Creator: Tian, Li; Pang, Yongzhen & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Cancer-Related NEET Proteins Transfer 2Fe-2S Clusters to Anamorsin, a Protein Required for Cytosolic Iron-Sulfur Cluster Biogenesis (open access)

Cancer-Related NEET Proteins Transfer 2Fe-2S Clusters to Anamorsin, a Protein Required for Cytosolic Iron-Sulfur Cluster Biogenesis

This article reports the first physiological 2Fe-2S cluster acceptor for both NEET proteins as human Anamorsin (also known as cytokine induced apoptosis inhibitor-1; CIAPIN-1).
Date: October 8, 2015
Creator: Lipper, Colin H.; Paddock, Mark L.; Onuchic, José N.; Mittler, Ron; Nechushtai, Rachel & Jennings, Patricia A.
Object Type: Article
System: The UNT Digital Library
Celebrating 20 Years of Genetic Discoveries in Legume Nodulation and Symbiotic Nitrogen Fixation (open access)

Celebrating 20 Years of Genetic Discoveries in Legume Nodulation and Symbiotic Nitrogen Fixation

This article is a review cataloging and contextualizing all of the plant genes currently known to be required for SNF in two model legume species, Medicago truncatula and Lotus japonicus, and two crop species, Glycine max (soybean) and Phaseolus vulgaris (common bean). The authors also briefly consider the future of SNF genetics in the era of pan-genomics and genome editing.
Date: October 24, 2019
Creator: Roy, Sonali; Liu, Wei; Nandety, Raja Sekhar; Crook, Ashley; Mysore, Kirankumar S.; Pislariu, Catalina I. et al.
Object Type: Article
System: The UNT Digital Library
Cluster K Mycobacteriophages: Insights into the Evolutionary Origins of Mycobacteriophage TM4 (open access)

Cluster K Mycobacteriophages: Insights into the Evolutionary Origins of Mycobacteriophage TM4

Article on Cluster K mycobacteriophages and insights into the evolutionary origins of mycobacteriophage TM4.
Date: October 2011
Creator: Pope, Welkin H.; Ferreira, Christina M.; Jacobs-Sera, Deborah; Benjamin, Robert C.; Davis, Ariangela J.; DeJong, Randall J. et al.
Object Type: Article
System: The UNT Digital Library
Combined effects of elevated temperature and Deepwater Horizon oil exposure on the cardiac performance of larval mahi-mahi, Coryphaena hippurus (open access)

Combined effects of elevated temperature and Deepwater Horizon oil exposure on the cardiac performance of larval mahi-mahi, Coryphaena hippurus

This article investigates physiological responses of larval fish to interactions between anthropogenic crude oile xposure andn atural factors.
Date: October 17, 2018
Creator: Perrichon, Prescilla; Mager, Edward M.; Pasparakis, Christina; Stieglitz, John D.; Benetti, Daniel D.; Grosell, Martin et al.
Object Type: Article
System: The UNT Digital Library
Comparative Plant Genomics Resources at Plant GDB (open access)

Comparative Plant Genomics Resources at Plant GDB

Article on comparative plant genomics resources at plant GDB.
Date: October 2005
Creator: Dong, Qunfeng; Lawrence, Carolyn J.; Schlueter, Shannon D.; Wilkerson, Matthew D.; Kurtz, Stefan; Brendel, Volker et al.
Object Type: Article
System: The UNT Digital Library
Comparing interval estimates for small sample ordinal CFA models (open access)

Comparing interval estimates for small sample ordinal CFA models

This article compares Bayesian, Robust maximum likelihood, and asymptotically generalized least squares interval estimates of factor correlations in ordinal confirmatory factor analysis models for small sample data.
Date: October 30, 2015
Creator: Natesan, Prathiba
Object Type: Article
System: The UNT Digital Library
Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology (open access)

Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology

This article reports the application of single-molecule real-time sequencing for determining the entire genome structure of the cyanotroph Pseudomonas fluorescens NCIMB 11764.
Date: October 1, 2015
Creator: Jones, Lauren B. & Kunz, Daniel A.
Object Type: Article
System: The UNT Digital Library
Concept Inventory Development Reveals Common Student Misconceptions about Microbiology (open access)

Concept Inventory Development Reveals Common Student Misconceptions about Microbiology

This article identifies misconceptions in microbiology held by undergraduate students upon entry into an introductory, general microbiology course.
Date: October 30, 2017
Creator: Briggs, Amy G.; Hughes, Lee E.; Brennan, R. E.; Buchner, John; Horak, Rachel E. A.; Katz-Amburn, D. Sue et al.
Object Type: Article
System: The UNT Digital Library
Crowdsourcing biocuration: the Community Assessment of Community 1 Annotation with Ontologies (CACAO) (open access)

Crowdsourcing biocuration: the Community Assessment of Community 1 Annotation with Ontologies (CACAO)

Article describing an approach to expand biocuration through crowdsourcing with undergraduates in the community-oriented wiki framework for GO annotation called the Gene Ontology Normal Usage Tracking System (GONUTS). This multiplies the number of high-quality annotations in international databases, enriches the coverage of the literature on normal gene function, and pushes the field in new directions.
Date: October 28, 2021
Creator: Ramsey, Jolene; McIntosh, Brenley; Renfro, Daniel; Aleksander, Susan A.; LaBonte, Sandra; Ross, Curtis et al.
Object Type: Article
System: The UNT Digital Library
Crystal Structure of Thrombin in Complex with S-Variegin: Insights of a Novel Mechanism of Inhibition and Design of Tunable Thrombin Inhibitors (open access)

Crystal Structure of Thrombin in Complex with S-Variegin: Insights of a Novel Mechanism of Inhibition and Design of Tunable Thrombin Inhibitors

Article on the crystal structure of thrombin in complex with s-variegin and insights of a novel mechanism of inhibition and design of tunable thrombin inhibitors.
Date: October 2011
Creator: Koh, Cho Yeow; Kumar, Sundramurthy; Kazimirova, Maria; Nuttall, Patricia A.; Radhakrishnan, Uvaraj P.; Kim, Seongcheol et al.
Object Type: Article
System: The UNT Digital Library
CUE1: A Mesophyll Cell-Specific Positive Regulator of Light-Controlled Gene Expression in Arabidopsis (open access)

CUE1: A Mesophyll Cell-Specific Positive Regulator of Light-Controlled Gene Expression in Arabidopsis

Article on CUE1 and a mesophyll cell-specific positive regulator of light-controlled gene expression in Arabidopsis.
Date: October 1, 1995
Creator: Li, Hsou-min; Culligan, Kevin M.; Dixon, R. A. & Chory, Joanne
Object Type: Article
System: The UNT Digital Library
Cysts of Azotobacter vinelandii with Double Coats (open access)

Cysts of Azotobacter vinelandii with Double Coats

Article on members of the genus Azotobacter, which are characterized by their ability to form cysts.
Date: October 1972
Creator: Cagle, Gerald D. & Vela, G. Roland, 1927-
Object Type: Article
System: The UNT Digital Library
Development, Validation, and Application of the Microbiology Concept Inventory (open access)

Development, Validation, and Application of the Microbiology Concept Inventory

This article describes the creation and validation of a new microbiology concept inventory using the American Society for Microbiology Curriculum Guidelines.
Date: October 5, 2017
Creator: Paustian, Timothy D.; Briggs, Amy G.; Brennan, R. E.; Boury, Nancy; Buchner, John; Harris, Shannon et al.
Object Type: Article
System: The UNT Digital Library
Developmental plasticity of mitochondrial function in American alligators, Alligator mississippiensis (open access)

Developmental plasticity of mitochondrial function in American alligators, Alligator mississippiensis

This article investigates the effects of chronic developmental hypoxia on cardiac mitochondrial function in embryonic and juvenile American alligators (Alligator mississippiensis).
Date: October 1, 2016
Creator: Galli, Gina L. J.; Crossley, Janna; Elsey, Ruth M.; Dzialowski, Edward M. (Edward Michael); Shiels, Holly A. & Crossley, Dane A., II
Object Type: Article
System: The UNT Digital Library
The Differences between NAD-dependent malic enzyme and NADP-dependent malic enzyme Subtypes of C4 Photosynthesis: More than Decarboxylating Enzymes (open access)

The Differences between NAD-dependent malic enzyme and NADP-dependent malic enzyme Subtypes of C4 Photosynthesis: More than Decarboxylating Enzymes

Article addresses the differences in evolutionary scenario, leaf anatomy, and especially C4 metabolic flow, C4 transporters, and cell-specific function deduced from recently reported cell-specific transcriptomic, proteomic, and metabolic analyses of NAD-dependent malic enzyme (NAD-ME) and NADP-dependent malic enzyme (NADP-ME) subtypes.
Date: October 13, 2016
Creator: Rao, Xiaolan & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Direct Pcr Amplification of Dna From Human Bloodstains, Saliva, and Touch Samples Collected With Microfloq® Swabs (open access)

Direct Pcr Amplification of Dna From Human Bloodstains, Saliva, and Touch Samples Collected With Microfloq® Swabs

This article investigates the efficacy of direct amplification of DNA from bloodstains, saliva stains, and touch samples using microFLOQ® Direct swabs and the GlobalFiler™ Express system (Thermo Fisher Scientific, Waltham, MA).
Date: October 26, 2017
Creator: Ambers, Angie D.; Wiley, Rachel; Novroski, Nicole & Budowle, Bruce
Object Type: Article
System: The UNT Digital Library
Distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula (open access)

Distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula

Article on distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula.
Date: October 12, 2010
Creator: Zhou, Rui; Jackson, Lisa A.; Shadle, Gail L.; Nakashima, Jin; Temple, Stephen; Chen, Fang et al.
Object Type: Article
System: The UNT Digital Library
Effect of selection for commercially productive traits on the plasticity of cardiovascular regulation in chicken breeds during embryonic development (open access)

Effect of selection for commercially productive traits on the plasticity of cardiovascular regulation in chicken breeds during embryonic development

Article investigates basic cardiovascular physiology in the Red Junglefowl, the broiler, and the White Leghorn breeds at 90% of incubation. The authors aimed to identify breed-specific features of arterial blood pressure and heart rate as well as the physiological mechanisms regulating them. They concluded that selection for rapid growth shifts cardiovascular regulatory plasticity to emphasize mechanisms that modulate pressure, and that selection for egg-laying capacity emphasizes mechanisms that modulate heart rate.
Date: October 1, 2012
Creator: Crossley, Dane A., II & Altimiras, J.
Object Type: Article
System: The UNT Digital Library
Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value (open access)

Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value

Data management plan for the grant "Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value." Cotton is an important oilseed crop in the U.S. economy. Cotton seed and other vegetative tissues produce unusual chemicals called cyclic fatty acids that have wide-ranging potential uses from high-value industrial properties to nutrition-oriented uses. This project focuses on identifying genes that contribute to the production and storage of these high value bioproducts.
Date: 2022-10-15/2025-10-14
Creator: Horn, Patrick J.
Object Type: Text
System: The UNT Digital Library
Emodin inhibits growth and induces apoptosis in an orthotopic hepatocellular carcinoma model by blocking activation of STAT3 (open access)

Emodin inhibits growth and induces apoptosis in an orthotopic hepatocellular carcinoma model by blocking activation of STAT3

Article on emodin inhibiting growth and inducing apoptosis in an orthotopic hepatocellular carcinoma model by blocking activation of STAT3.
Date: October 1, 2013
Creator: Subramaniam, Aruljothi; Shanmugam, Muthu K.; Ong, Tina H.; Li, Feng; Perumal, Ekambaram; Chen, Luxi et al.
Object Type: Article
System: The UNT Digital Library
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence (open access)

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

Article describes study which searched for genes with putatively unknown roles in regulating cell wall biosynthesis using an extended network-based Lines of Evidence (LOE) pipeline to combine multiple omics data sets in P. trichocarpa, including gene coexpression, gene comethylation, population level pairwise SNP correlations, and two distinct SNP-metabolite Genome Wide Association Study (GWAS) layers.
Date: October 8, 2019
Creator: Furches, Anna; Kainer, David; Weighill, Deborah; Large, Annabel; Jones, Piet; Walker, Angelica M. et al.
Object Type: Article
System: The UNT Digital Library