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A dynamic model of lignin biosynthesis in Brachypodium distachyon (open access)

A dynamic model of lignin biosynthesis in Brachypodium distachyon

Article proposes a dynamic mathematical model that integrates various datasets and other information regarding the lignin pathway in Brachypodium distachyon and permits explanations for some counterintuitive observations.
Date: September 19, 2018
Creator: Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Barros-Rios, Jaime; Engle, Nancy L.; Yang, Zamin K. et al.
Object Type: Article
System: The UNT Digital Library
A dynamic model of lignin biosynthesis in Brachypodium distachyon (open access)

A dynamic model of lignin biosynthesis in Brachypodium distachyon

This article proposes a dynamic mathematical model that integrates various datasets and other information regarding the lignin pathway in Brachypodium distachyon and permits explanations for some counterintuitive observations.
Date: September 19, 2018
Creator: Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Barros, Jaime; Engle, Nancy L.; Yang, Zamin K. et al.
Object Type: Article
System: The UNT Digital Library
Early Steps in Proanthocyanidin Biosynthesis in the Model Legume Medicago truncatula (open access)

Early Steps in Proanthocyanidin Biosynthesis in the Model Legume Medicago truncatula

Article on early steps in proanthocyanidin biosynthesis in the model legume Medicago truncatula.
Date: August 13, 2007
Creator: Pang, Yongzhen; Peel, Gregory J.; Wright, Elane; Wang, Z.-Y. (Zeng-Yu), 1963- & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Editorial: Advances in Plant-Hemipteran Interactions (open access)

Editorial: Advances in Plant-Hemipteran Interactions

This editorial discusses sixteen manuscripts which address the physiology and molecular biology of plant-hemipteran interactions at different levels.
Date: September 21, 2017
Creator: Shah, Jyoti & Walling, Linda
Object Type: Article
System: The UNT Digital Library
Elevated CO2 increases energetic cost and ion movement in the marine fish intestine (open access)

Elevated CO2 increases energetic cost and ion movement in the marine fish intestine

Article describes study which aimed to gain resolution in assessing the energetic demand associated with acid-base regulation by examining ion movement and O2 consumption rates of isolated intestinal tissue from Gulf toadfish acclimated to control or 1900 μatm CO2 (projected for year 2300).
Date: September 29, 2016
Creator: Heuer, Rachael M. & Grosell, Martin
Object Type: Article
System: The UNT Digital Library
Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters (open access)

Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters

This paper discusses expressed sequence tag sequencing over grid and cloud computing clusters, specifically for biological applications. In this paper, the authors propose a Web service framework for high-level job scheduling that is developed for scientific applications.
Date: September 2009
Creator: Pallickara, Sangmi Lee; Pierce, Marlon; Dong, Qunfeng & Kong, ChinHua
Object Type: Paper
System: The UNT Digital Library
Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata) (open access)

Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata)

Article describes how kudzu produces both O- and C-glycosylated isoflavones, with puerarin (C-glucosyl daidzein) as an important bioactive compound. The authors go on to explain how expression of recombinant UGTs in Escherichia coli and candidate C-glycosyltransferases in Medicago truncatula were used to explore substrate specificities, and gene silencing of UGT and key isoflavone biosynthetic genes in kudzu hairy roots employed to test hypotheses concerning the substrate(s) for C-glycosylation.
Date: September 2, 2022
Creator: Adolfo, Laci M.; Burks, David J.; Rao, Xiaolan; Alvarez-Hernandez, Anislay & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass (open access)

Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass

Article on factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass.
Date: September 10, 2014
Creator: McQualter, Richard B.; Somleva, Maria N.; Gebbie, Leigh K.; Li, Xuemei; Petrasovits, Lars A.; Snell, Kristi D. et al.
Object Type: Article
System: The UNT Digital Library
Field-grown transgenic switchgras (Panicum virgatum L.) with altered lignin does not affect soil chemistry, microbiology, and carbon storage potential (open access)

Field-grown transgenic switchgras (Panicum virgatum L.) with altered lignin does not affect soil chemistry, microbiology, and carbon storage potential

This article describes a study to evaluate effects of two independent lines of caffeic acid O-methyltransferase (COMT) downregulated switchgrass plants on soils in terms of chemistry, microbiolgy, and carbon cycling when grown in the field.
Date: September 22, 2016
Creator: DeBruyn, Jennifer M.; Bevard, David A.; Essington, Michael E.; McKnight, Julie Y.; Schaeffer, Sean M.; Baxter, Holly L. et al.
Object Type: Article
System: The UNT Digital Library
Florigen and anti-florigen – a systemic mechanism for coordinating growth and termination in flowering plants (open access)

Florigen and anti-florigen – a systemic mechanism for coordinating growth and termination in flowering plants

Article describes study establishing FLOWERING LOCUS T (FT) as a key flower-promoting gene in photoperiodic systems.
Date: September 16, 2014
Creator: Lifschitz, Eliezer; Ayre, Brian G. & Eshed, Yuval
Object Type: Article
System: The UNT Digital Library
Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula (open access)

Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula

Article on a functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula.
Date: September 26, 2006
Creator: Deavours, Bettina E.; Liu, Chang-Jun; Naoumkina, Marina A.; Tang, Yuhong; Farag, Mohamed A.; Sumner, Lloyd W. et al.
Object Type: Article
System: The UNT Digital Library
Functional Characterization of the Arabidopsis AtSUC2 Sucrose/H+ Symporter by Tissue-Specific Complementation Reveals an Essential Role in Phloem Loading But Not in Long-Distance Transport (open access)

Functional Characterization of the Arabidopsis AtSUC2 Sucrose/H+ Symporter by Tissue-Specific Complementation Reveals an Essential Role in Phloem Loading But Not in Long-Distance Transport

This article discusses functional characterization of the Arabidopsis AtSUC2 Sucrose/H+ Symporter.
Date: September 2008
Creator: Srivastava, Avinash C.; Ganesan, Savita; Ismail, Ihab O. & Ayre, Brian G.
Object Type: Article
System: The UNT Digital Library
A gene-editing/complementation strategy for tissue-specific lignin reduction while preserving biomass yield (open access)

A gene-editing/complementation strategy for tissue-specific lignin reduction while preserving biomass yield

This article develops a method, using a single DNA construct that uses CRISPR–Cas9 gene editing to knock-out expression of an endogenous gene of lignin monomer biosynthesis while at the same time expressing a modified version of the gene’s open reading frame that escapes cutting by the Cas9 system and complements the introduced mutation in a tissue-specific manner. This method is applicable to any plant species in which transformation and gene editing are feasible and validated vessel-specific promoters are available.
Date: September 3, 2021
Creator: Yu, Hasi; Liu, Chang & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
The Genome-Wide Early Temporal Response of Saccharomyces cerevisiae to Oxidative Stress Induced by Cumene Hydroperoxide (open access)

The Genome-Wide Early Temporal Response of Saccharomyces cerevisiae to Oxidative Stress Induced by Cumene Hydroperoxide

Article on the genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.
Date: September 20, 2013
Creator: Sha, Wei; Martins, Ana M.; Laubenbacher, Reinhard; Mendes, Pedro & Shulaev, Vladimir
Object Type: Article
System: The UNT Digital Library
Genome-wide mutagenesis of Zea mays L. using RescueMu transposons (open access)

Genome-wide mutagenesis of Zea mays L. using RescueMu transposons

This article discusses genome-wide mutagenesis of Zea mays L. using RescueMu transposons.
Date: September 23, 2004
Creator: Fernandes, John; Dong, Qunfeng; Schneider, Bret; Morrow, Darren J.; Nan, Guo-Ling; Brendel, Volker et al.
Object Type: Article
System: The UNT Digital Library
Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas (open access)

Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas

Data management plan for the grant, "Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas."
Date: 2023-09-15/2028-08-31
Creator: Gregory, Andrew & Molina, Clarissa
Object Type: Text
System: The UNT Digital Library
Habitat amount or landscape configuration: Emerging HotSpot analysis reveals the importance of habitat amount for a grassland bird in South Dakota (open access)

Habitat amount or landscape configuration: Emerging HotSpot analysis reveals the importance of habitat amount for a grassland bird in South Dakota

The authors of the article used pheasants (Phasianus colchicus) across South Dakota, USA as a model species to identify environmental factors driving spatiotemporal variation in population productivity. They found that the amount of grassland at a local spatial scale was the primary factor influencing an area being a HotSpot.
Date: September 26, 2022
Creator: Harsh, Sprih; Lonsinger, Robert C. & Gregory, Andrew
Object Type: Article
System: The UNT Digital Library
An “ideal lignin” facilitates full biomass utilization (open access)

An “ideal lignin” facilitates full biomass utilization

This article describes the ideal nature of the Catechyl lignin (C-lignin) via a revised compositional characterization of the vanilla seed coat fiber, new features of the C-lignin's reactivity and stability, and successful attempts at converting it to monomers in near-quantitative yields.
Date: September 28, 2018
Creator: Li, Yanding; Shuai, Li; Kim, Hoon; Hussain Motagamwala, Ali; Mobley, Justin K.; Yue, Fengxia et al.
Object Type: Article
System: The UNT Digital Library
Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil (open access)

Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil

This article proposes a model for the accumulation of substantial levels of cyclopropane fatty acids (CPA) in camelina, and discusses the differences between CPA accumulation in camelina and Arabidopsis.
Date: July 10, 2017
Creator: Yu, Xiao-Hong; Cahoon, Rebecca E.; Horn, Patrick J.; Shi, Hai; Prakash, Richa R.; Cai, Yuanheng et al.
Object Type: Article
System: The UNT Digital Library
Improved Campephiline detection: An experiment conducted with the Magellanic Woodpecker (open access)

Improved Campephiline detection: An experiment conducted with the Magellanic Woodpecker

Article describes a study which tried to determine which of three methods (useing a drumming device to simulate a double‐knock (i.e., territorial acoustical signal), broadcasting a territorial call, or passively listening) best results in a detection of Magellanic Woodpeckers (Campephilus magellanicus ), and if weather variables influence detection probability.
Date: September 27, 2019
Creator: Wynia, Amy L.; Rolland, Virginie & Jiménez, Jaime E.
Object Type: Article
System: The UNT Digital Library
Improved forage digestibility of tall fescue (Festuca arundinacea) by transgenic down-regulation of cinnamyl alcohol dehydrogenase (open access)

Improved forage digestibility of tall fescue (Festuca arundinacea) by transgenic down-regulation of cinnamyl alcohol dehydrogenase

Article on improved forage digestibility of tall fescue (Festuca arundinacea) by transgenic down-regulation of cinnamyl alcohol dehydrogenase.
Date: September 19, 2003
Creator: Chen, Lei; Auh, Chung-Kyoon; Dowling, Paul; Bell, Jeremy; Chen, Fang; Hopkins, Andrew et al.
Object Type: Article
System: The UNT Digital Library
Improved Staining of Extracellular Polymer for Electron Microscopy: Examination of Azotobacter, Zoogloea, Leuconostoc, and Bacillus (open access)

Improved Staining of Extracellular Polymer for Electron Microscopy: Examination of Azotobacter, Zoogloea, Leuconostoc, and Bacillus

Article on improved staining of extracellular polymer for electron microscopy and an examination of Azotobacter, Zoogloea, Leuconostoc, and Bacillus.
Date: September 1972
Creator: Cagle, Gerald D.; Pfister, Robert M. & Vela, G. Roland, 1927-
Object Type: Article
System: The UNT Digital Library
Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis (open access)

Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis

Article on improving saccharification efficiency of alfalfa stems through modification of the terminal stages of monolignol biosynthesis.
Date: September 27, 2008
Creator: Jackson, Lisa A.; Shadle, Gail L.; Zhou, Rui; Nakashima, Jin; Chen, Fang & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas (open access)

IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas

Data management plan for the grant "IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas." Research giving students the opportunity to be trained in quantitative experimental design and work as part of a multinational research collaboration to study infectious disease emergence in one of the few remaining pristine places on Earth. The Cape Horn Biosphere Reserve (CHBR) off the southern tip of South America protects pristine ecosystem is perfect for this type of graduate student training. The CHBR is part of the sub-Antarctic Magellanic ecoregion, which is globally significant because it houses the worlds southernmost forest biome, contains numerous endemic species, is remote, and is relatively free of anthropogenic impacts. The research questions themselves will be flexible, but organized thematically. Specifically, this IRES Track-II will focus on the merging molecular genetic analysis using a mobile next generation sequencing lab with mist netting and arthropod trapping to investigate the impacts of wildlife disease on local biodiversity and community structure. Secondarily, eDNA and traditional wildlife disease monitoring approaches will be applied to understand the potential for zoonosis and understanding ecological factors that contribute to, or inhibit, zoonosis. Resultantly, participation in this program …
Date: 2021-09-01/2024-08-31
Creator: Gregory, Andrew; Kennedy, James H. & Rozzi, Ricardo, 1960-
Object Type: Text
System: The UNT Digital Library