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BOV - a web-based BLAST output visualization tool (open access)

BOV - a web-based BLAST output visualization tool

Article discussing research on BOV, a web-based BLAST output visualization tool.
Date: September 15, 2008
Creator: Gollapudi, Rajesh; Revanna, Kashi V.; Hemmerich, Chris; Schaack, Sarah & Dong, Qunfeng
Object Type: Article
System: The UNT Digital Library
Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas (open access)

Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas

Data management plan for the grant, "Graduate Research Fellowship Program (GRFP): Landscape genetics of wild turkey (Meleagris gallopavo) in Texas."
Date: 2023-09-15/2028-08-31
Creator: Gregory, Andrew & Molina, Clarissa
Object Type: Text
System: The UNT Digital Library
IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas (open access)

IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas

Data management plan for the grant "IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas." Research giving students the opportunity to be trained in quantitative experimental design and work as part of a multinational research collaboration to study infectious disease emergence in one of the few remaining pristine places on Earth. The Cape Horn Biosphere Reserve (CHBR) off the southern tip of South America protects pristine ecosystem is perfect for this type of graduate student training. The CHBR is part of the sub-Antarctic Magellanic ecoregion, which is globally significant because it houses the worlds southernmost forest biome, contains numerous endemic species, is remote, and is relatively free of anthropogenic impacts. The research questions themselves will be flexible, but organized thematically. Specifically, this IRES Track-II will focus on the merging molecular genetic analysis using a mobile next generation sequencing lab with mist netting and arthropod trapping to investigate the impacts of wildlife disease on local biodiversity and community structure. Secondarily, eDNA and traditional wildlife disease monitoring approaches will be applied to understand the potential for zoonosis and understanding ecological factors that contribute to, or inhibit, zoonosis. Resultantly, participation in this program …
Date: 2021-09-01/2024-08-31
Creator: Gregory, Andrew; Kennedy, James H. & Rozzi, Ricardo, 1960-
Object Type: Text
System: The UNT Digital Library
Habitat amount or landscape configuration: Emerging HotSpot analysis reveals the importance of habitat amount for a grassland bird in South Dakota (open access)

Habitat amount or landscape configuration: Emerging HotSpot analysis reveals the importance of habitat amount for a grassland bird in South Dakota

The authors of the article used pheasants (Phasianus colchicus) across South Dakota, USA as a model species to identify environmental factors driving spatiotemporal variation in population productivity. They found that the amount of grassland at a local spatial scale was the primary factor influencing an area being a HotSpot.
Date: September 26, 2022
Creator: Harsh, Sprih; Lonsinger, Robert C. & Gregory, Andrew
Object Type: Article
System: The UNT Digital Library
Altered brain ion gradients following compensation for elevated CO2 are linked to behavioural alterations in a coral reef fish (open access)

Altered brain ion gradients following compensation for elevated CO2 are linked to behavioural alterations in a coral reef fish

This article pairs a behavioural assay with measurements of relevant intracellular and extracellular acid-base parameters in a coral reef fish exposed to elevated CO₂.
Date: September 13, 2016
Creator: Heuer, R.M.; Welch, M.J.; Rummer, J.L.; Munday, P.L. & Grosell, Martin
Object Type: Article
System: The UNT Digital Library
Elevated CO2 increases energetic cost and ion movement in the marine fish intestine (open access)

Elevated CO2 increases energetic cost and ion movement in the marine fish intestine

Article describes study which aimed to gain resolution in assessing the energetic demand associated with acid-base regulation by examining ion movement and O2 consumption rates of isolated intestinal tissue from Gulf toadfish acclimated to control or 1900 μatm CO2 (projected for year 2300).
Date: September 29, 2016
Creator: Heuer, Rachael M. & Grosell, Martin
Object Type: Article
System: The UNT Digital Library
Cis elements and potential trans-acting factors for the developmental regulation of the Phaseolus vulgaris CHS15 promoter (open access)

Cis elements and potential trans-acting factors for the developmental regulation of the Phaseolus vulgaris CHS15 promoter

Article on cis elements and potential trans-acting factors for the developmental regulation of the Phaseolus vulgaris CHS15 promoter.
Date: September 1, 1995
Creator: Hotter, Grant S.; Kooter, Jan; Dubery, Ian A.; Lamb, Christopher J.; Dixon, R. A. & Harrison, Maria J.
Object Type: Article
System: The UNT Digital Library
Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis (open access)

Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis

Article on improving saccharification efficiency of alfalfa stems through modification of the terminal stages of monolignol biosynthesis.
Date: September 27, 2008
Creator: Jackson, Lisa A.; Shadle, Gail L.; Zhou, Rui; Nakashima, Jin; Chen, Fang & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Supplementary materials: Improving saccharification efficiency of alfalfa stems through modification of the terminal stages of monolignol biosynthesis (open access)

Supplementary materials: Improving saccharification efficiency of alfalfa stems through modification of the terminal stages of monolignol biosynthesis

Supplementary materials accompanying an article on improving saccharification efficiency of alfalfa stems through modification of the terminal stages of monolignol biosynthesis.
Date: September 27, 2008
Creator: Jackson, Lisa A.; Shadle, Gail L.; Zhou, Rui; Nakashima, Jin; Chen, Fang & Dixon, R. A.
Object Type: Text
System: The UNT Digital Library
Nest-site selection and breeding success of passerines in the world’s southernmost forests (open access)

Nest-site selection and breeding success of passerines in the world’s southernmost forests

This article studies the nest-site selection and survival rate of the five most abundant open-cup forest-dwelling passerines (Elaenia albiceps, Zonotrichia capensis, Phrygilus patagonicus, Turdus falcklandii, and Anairetes parulus) in the world’s southernmost forests of Navarino Island, in the Cape Horn Biosphere reserve, Chile (55°S).
Date: February 5, 2020
Creator: Jara Miller, Rocio F.; Crego, Ramiro D.; Samuel, Michael D.; Rozzi, Ricardo, 1960- & Jiménez, Jaime E.
Object Type: Article
System: The UNT Digital Library
Lipidomic Analysis of Endocannabinoid Signaling: Targeted Metabolite Identification and Quantification (open access)

Lipidomic Analysis of Endocannabinoid Signaling: Targeted Metabolite Identification and Quantification

This article reviews several methodologies to quantify endocannabinoids in various biological systems.
Date: September 9, 2015
Creator: Keereetaweep, Jantana & Chapman, Kent D.
Object Type: Article
System: The UNT Digital Library
Prostasin and hepatocyte growth factor B in factor VIIa generation: Serine protease knockdowns in zebrafish (open access)

Prostasin and hepatocyte growth factor B in factor VIIa generation: Serine protease knockdowns in zebrafish

Article aims to identify other proteases that may activate FVII using zebrafish as a model.
Date: September 22, 2020
Creator: Khandekar, Gauri; Iyer, Neha & Jagadeeswaran, Pudur
Object Type: Article
System: The UNT Digital Library
Lipid Profiling Reveals Tissue-Specific Differences for N-Acylethanolamines and their Precursors in Mice Lacking Fatty Acid Amide Hydrolase (open access)

Lipid Profiling Reveals Tissue-Specific Differences for N-Acylethanolamines and their Precursors in Mice Lacking Fatty Acid Amide Hydrolase

Article on lipid profiling revealing tissue-specific differences for N-acylethanolamines and their precursors in mice lacking fatty acid amide hydrolase.
Date: September 2010
Creator: Kilaru, Aruna; Isaac, Giorgis; Tamura, Pam; Baxter, David; Duncan, Scott R.; Venables, Barney J. et al.
Object Type: Article
System: The UNT Digital Library
An “ideal lignin” facilitates full biomass utilization (open access)

An “ideal lignin” facilitates full biomass utilization

This article describes the ideal nature of the Catechyl lignin (C-lignin) via a revised compositional characterization of the vanilla seed coat fiber, new features of the C-lignin's reactivity and stability, and successful attempts at converting it to monomers in near-quantitative yields.
Date: September 28, 2018
Creator: Li, Yanding; Shuai, Li; Kim, Hoon; Hussain Motagamwala, Ali; Mobley, Justin K.; Yue, Fengxia et al.
Object Type: Article
System: The UNT Digital Library
Florigen and anti-florigen – a systemic mechanism for coordinating growth and termination in flowering plants (open access)

Florigen and anti-florigen – a systemic mechanism for coordinating growth and termination in flowering plants

Article describes study establishing FLOWERING LOCUS T (FT) as a key flower-promoting gene in photoperiodic systems.
Date: September 16, 2014
Creator: Lifschitz, Eliezer; Ayre, Brian G. & Eshed, Yuval
Object Type: Article
System: The UNT Digital Library
Silicon supply promotes differences in growth and C:N:P stoichiometry between bamboo and tree saplings (open access)

Silicon supply promotes differences in growth and C:N:P stoichiometry between bamboo and tree saplings

Article describes how silicon can be important for the growth, functioning, and stoichiometric regulation of nutrients for high-Si-accumulating bamboo. The authors demonstrated that silicon supply can decrease the ratio of C:Si in bamboo leaves and increase the ratio of N:P without altering nutrient status or the N:P ratio of tree spalings.
Date: September 21, 2023
Creator: Liu, Xiaoyu; Tang, Xinghao; Compson, Zacchaeus Greg; Huang, Dongmei; Zou, Guiwu; Luan, Fenggang et al.
Object Type: Article
System: The UNT Digital Library
Is Exposure to Macondo Oil Reflected in the Otolith Chemistry of Marsh-Resident Fish? (open access)

Is Exposure to Macondo Oil Reflected in the Otolith Chemistry of Marsh-Resident Fish?

This article evaluates otolith microchemistry as a method for assessing oil exposure history.
Date: September 28, 2016
Creator: López-Duarte, Paola C.; Fodrie, F. Joel; Jensen, Olaf P.; Whitehead, Andrew; Galvez, Fernando; Dubansky, Benjamin et al.
Object Type: Article
System: The UNT Digital Library
The osmorespiratory compromise in the euryhaline killifish: water regulation during hypoxia (open access)

The osmorespiratory compromise in the euryhaline killifish: water regulation during hypoxia

Article studying water regulation during hypoxia in euryhaline killifish.
Date: September 24, 2019
Creator: Mager, Edward M.; Wood, Chris M.; Ruhr, Ilan M.; Schauer, Kevin L.; Wang, Yadong; McDonald, M. Danielle et al.
Object Type: Article
System: The UNT Digital Library
State of the world's raptors: Distributions, threats, and conservation recommendations (open access)

State of the world's raptors: Distributions, threats, and conservation recommendations

Article exploring the International Union for the Conservation of Nature's Red List to examine the conservation status, distributions, threats, and conservation recommendations for all 557 raptor species.
Date: September 6, 2018
Creator: McClure, Christopher J.W.; Westrip, James R.S.; Johnson, Jeff A.; Schulwitz, Sarah; Virani, Munir Z.; Davies, Robert et al.
Object Type: Article
System: The UNT Digital Library
Dry blood spot samples to monitor immune-associated mRNA expression in intervention studies: Impact of Baker's yeast beta glucan (open access)

Dry blood spot samples to monitor immune-associated mRNA expression in intervention studies: Impact of Baker's yeast beta glucan

Article describes how monitoring immunological response to physical stressors in a field setting is challenging because existing methods require a laboratory visit and traditional blood collection via venipuncture. The purpose of this study was to determine if our optimized dry blood spot (DBS) methodology yields sufficient total RNA to quantify the effect of Baker's Yeast Beta Glucan supplementation on post-exercise mRNA expression.
Date: September 22, 2023
Creator: McFarlin, Brian K.; Bridgeman, Elizabeth A.; Vingren, Jakob L. & Will, David W.
Object Type: Article
System: The UNT Digital Library
Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass (open access)

Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass

Article on factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass.
Date: September 10, 2014
Creator: McQualter, Richard B.; Somleva, Maria N.; Gebbie, Leigh K.; Li, Xuemei; Petrasovits, Lars A.; Snell, Kristi D. et al.
Object Type: Article
System: The UNT Digital Library
Unraveling Δ1-Pyrroline-5-Carboxylate-Proline Cycle in Plants by Uncoupled Expression of Proline Oxidation Enzymes (open access)

Unraveling Δ1-Pyrroline-5-Carboxylate-Proline Cycle in Plants by Uncoupled Expression of Proline Oxidation Enzymes

Article showing that overexpression of MsProDH in tobacco and Arabidopsis or impairment of P5C oxidation in the Arabidopsis p5cdh mutant did not change the cellular Pro to P5C ratio under ambient and osmotic stress conditions, indicating that P5C excess was reduced to Pro in a mitochondrial-cytosolic cycle. Results show that normal oxidation of P5C to Glu by P5CDH is key to prevent P5C-Pro intensive cycling and avoid ROS production from electron run-off.
Date: September 25, 2009
Creator: Miller, Gad; Honig, Arik; Stein, Hanan; Suzuki, Nobuhiro; Mittler, Ron & Zilberstein, Aviah
Object Type: Article
System: The UNT Digital Library
ROS Are Good (open access)

ROS Are Good

This opinion article focuses on the possibility that ROS are beneficial to plants, supporting cellular proliferation, physiological function, and viability, and that maintaining a basal level of ROS in cells is essential for life.
Date: September 23, 2016
Creator: Mittler, Ron
Object Type: Article
System: The UNT Digital Library
Complete Genome Sequences of the Novel Cluster BP Phages Infecting Streptomyces sanglieri, AxeJC, Cumberbatch, Eastland, Eklok, HFrancette, Ignacio, Piccadilly, and Vondra (open access)

Complete Genome Sequences of the Novel Cluster BP Phages Infecting Streptomyces sanglieri, AxeJC, Cumberbatch, Eastland, Eklok, HFrancette, Ignacio, Piccadilly, and Vondra

Article describes the Streptomyces sanglieri bacteriophages AxeJC, Cumberbatch, Eastland,Eklok, HFrancette, Ignacio, Piccadilly, and Vondra form a novel actinobacteriophage cluster,BP. These siphoviruses have circularly permuted genomes with an average size of 37,700 bp and a GC content of 71%. Each genome contains approximately 58 protein-coding genes, with no tRNAs.
Date: September 14, 2022
Creator: Nath, Sreemoye; Sulaiman, Ahmad; Maneekul, Jindanuch; Bhuiyan, Swapan; Layton, Sonya R.; Menchaca, Carolina et al.
Object Type: Article
System: The UNT Digital Library