xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features (open access)

xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

Article discussing the eXtensible Genome Data Broker (xGDB) and an open-source computational infrastructure for the integrated evaluation and anlysis of genome features.
Date: November 20, 2006
Creator: Schlueter, Shannon D.; Wilkerson, Matthew D.; Dong, Qunfeng & Brendel, Volker
Object Type: Article
System: The UNT Digital Library
Effective carbon partitioning driven by exotic phloem-specific regulatory elements fused to the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene (open access)

Effective carbon partitioning driven by exotic phloem-specific regulatory elements fused to the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene

This article discusses the effect and overall importance of the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene on carbon partitioning and plant growth.
Date: January 20, 2009
Creator: Srivastava, Avinash C.; Ganesan, Savita; Ismail, Ihab O. & Ayre, Brian G.
Object Type: Article
System: The UNT Digital Library
Computational criteria for establishing reflex from plasticity to hardwiring (open access)

Computational criteria for establishing reflex from plasticity to hardwiring

Article accompanying a poster for the 2010 Computational Neuroscience Annual Meeting. This article discusses computational criteria for establishing reflex from plasticity to hardwiring.
Date: July 20, 2010
Creator: Tam, Nicoladie D.
Object Type: Article
System: The UNT Digital Library
Characterization of sub-nuclear changes in Caenorhabditis elegans embryos exposed to brief, intermediate and long-term anoxia to analyze anoxia-induced cell cycle arrest (open access)

Characterization of sub-nuclear changes in Caenorhabditis elegans embryos exposed to brief, intermediate and long-term anoxia to analyze anoxia-induced cell cycle arrest

Article discussing research on the characterization of sub-nuclear changes in Caenorhabditis elegans embryos exposed to brief, intermediate and long-term anoxia to analyze anoxia-induced cell cycle arrest.
Date: December 20, 2005
Creator: Hajeri, Vinita A.; Trejo, Jesus & Padilla, Pamela A.
Object Type: Article
System: The UNT Digital Library
Preliminary Assessment of Microbiome Changes Following Blood-Feeding and Survivorship in the Amblyomma americanum Nymph-to-Adult Transition using Semiconductor Sequencing (open access)

Preliminary Assessment of Microbiome Changes Following Blood-Feeding and Survivorship in the Amblyomma americanum Nymph-to-Adult Transition using Semiconductor Sequencing

Article on a preliminary assessment of microbiome changes following blood-feeding and survivorship in the Amblyomma americanum nymph-to-adult transition using semiconductor sequencing.
Date: June 20, 2013
Creator: Menchaca, Arturo C.; Visi, David K.; Strey, Otto F.; Teel, Pete D.; Kalinowski, Kevin E.; Allen, Michael S. et al.
Object Type: Article
System: The UNT Digital Library
The Genome-Wide Early Temporal Response of Saccharomyces cerevisiae to Oxidative Stress Induced by Cumene Hydroperoxide (open access)

The Genome-Wide Early Temporal Response of Saccharomyces cerevisiae to Oxidative Stress Induced by Cumene Hydroperoxide

Article on the genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.
Date: September 20, 2013
Creator: Sha, Wei; Martins, Ana M.; Laubenbacher, Reinhard; Mendes, Pedro & Shulaev, Vladimir
Object Type: Article
System: The UNT Digital Library
Early Steps in Proanthocyanidin Biosynthesis in the Model Legume Medicago truncatula (open access)

Early Steps in Proanthocyanidin Biosynthesis in the Model Legume Medicago truncatula

Article on early steps in proanthocyanidin biosynthesis in the model legume Medicago truncatula.
Date: August 13, 2007
Creator: Pang, Yongzhen; Peel, Gregory J.; Wright, Elane; Wang, Z.-Y. (Zeng-Yu), 1963- & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Enzymes of B-Ring-Deoxy Flavonoid Biosynthesis in Elicited Cell Cultures of "Old Man" Cactus (Cephalocereus senilis) (open access)

Enzymes of B-Ring-Deoxy Flavonoid Biosynthesis in Elicited Cell Cultures of "Old Man" Cactus (Cephalocereus senilis)

Article on enzymes of b-ring-deoxy flavonoid biosynthesis in elicited cell cultures of "Old Man" cactus (Cephalocereus senilis).
Date: August 20, 1995
Creator: Liu, Qin; Bonness, Maureen S.; Liu, Ming; Seradge, Espanta; Dixon, R. A. & Mabry, Tom J.
Object Type: Article
System: The UNT Digital Library

Evaluation of Online-Only Journal Quality from Analysis of Email Solicitations

This presentation contains an analysis of ~600 solicitation emails related to 317 scholarly journals received within a one-year period to assess the quality of publishing venues available.
Date: May 20, 2016
Creator: Burggren, Warren W.
Object Type: Presentation
System: The UNT Digital Library
Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome (open access)

Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome

This article reports the draft genome sequence of a Bacillus bacterium isolated from the microflora of Nostoc colonies grown at the Andean wetlands in northern Chile.
Date: August 20, 2015
Creator: Vilo, Claudia A.; Galetovic, Alexandra; Araya, Jorge E.; Gómez-Silva, Benito & Dong, Qunfeng
Object Type: Article
System: The UNT Digital Library
Interactions between mitoNEET and NAF-1 in cells (open access)

Interactions between mitoNEET and NAF-1 in cells

This article uses yeast two-hybrid to demonstrate through vivo bimolecular fluorescence complementation (BiFC), direct coupling analysis (DCA), RNA-sequencing, ROS and iron imaging, and single and double shRNA lines with suppressed mNT, NAF-1 and mNT/NAF-1 expression, that mNT and NAF-1 directly interact in mammalian cells and could function in the same cellular pathway.
Date: April 20, 2017
Creator: Karmi, Ola; Holt, Sarah H.; Song, Luhua; Tamir, Sagi; Luo, Yuting; Bai, Fang et al.
Object Type: Article
System: The UNT Digital Library
Synthesis of Phenoxyacyl-Ethanolamides and Their Effects on Fatty Acid Amide Hydrolase Activity (open access)

Synthesis of Phenoxyacyl-Ethanolamides and Their Effects on Fatty Acid Amide Hydrolase Activity

This article discusses the synthesis of two sets of phenoxyacyl-ethanolamides from natural products, 3-n-pentadecylphenolethanolamide and cardanolethanolamide, with structural similarity to N-Acylethanolamines and characterizes their effects on the hydroltic activity of fatty acid amide hydrolase.
Date: February 20, 2014
Creator: Faure, Lionel; Nagarajan, Subbiah; Hwang, Hyeondo; Montgomery, Christa L.; Khan, Bibi Rafeiza; John, George et al.
Object Type: Article
System: The UNT Digital Library
Breast Cancer Stem-Like Cells Are Inhibited by Diosgenin, a Steroidal Saponin, by the Attenuation of the Wnt β-Catenin Signaling via the Wnt Antagonist Secreted Frizzled Related Protein-4 (open access)

Breast Cancer Stem-Like Cells Are Inhibited by Diosgenin, a Steroidal Saponin, by the Attenuation of the Wnt β-Catenin Signaling via the Wnt Antagonist Secreted Frizzled Related Protein-4

This article describes findings that demonstrate the affect of diosgenin (DG) on inhibiting the resilient breast cancer stem cells (CSCs) which could provide a benchmark for the development of DG-based therapies in breast cancer treatment.
Date: March 20, 2017
Creator: Bhuvanalakshmi, G.; Basappa; Rangappa, Kanchugarakoppal S.; Dharmarajan, Arunasalam; Sethi, Gautam; Kumar, Alan Prem et al.
Object Type: Article
System: The UNT Digital Library
ANXA1 inhibits miRNA-196a in a negative feedback loop through  NF-kB and c-Myc to reduce breast cancer proliferation (open access)

ANXA1 inhibits miRNA-196a in a negative feedback loop through NF-kB and c-Myc to reduce breast cancer proliferation

This article shows that miR196a was highly expressed in ER+MCF-7 breast cancer cells when compared to normal mammary gland cells, with expression levels negatively correlating to ANXA1.
Date: April 20, 2016
Creator: Yuan, Yi; Anbalagan, Durkeshwari; Lee, Lay Hoon; Samy, Ramar Perumal; Shanmugam, Muthu K.; Kumar, Alan Prem et al.
Object Type: Article
System: The UNT Digital Library
Erratum to: More Comprehensive Forensic Genetic Marker Analyses for Accurate Human Remains Identification Using Massively Parallel DNA Sequencing (open access)

Erratum to: More Comprehensive Forensic Genetic Marker Analyses for Accurate Human Remains Identification Using Massively Parallel DNA Sequencing

This article provides erratum for the article "More Comprehensive Forensic Genetic Marker Analyses for Accurate Human Remains Identification Using Massively Parallel DNA Sequencing," which incorrectly deleted an author from the author list.
Date: April 20, 2017
Creator: Ambers, Angie D.; Churchill, Jennifer D.; King, Jonathan L.; Stoljarova, Monika; Gill-King, Harrell; Assidi, Mourad et al.
Object Type: Article
System: The UNT Digital Library
Transgenic Switchgrass (Panicum Virgatum L.) Targeted for Reduced Recalcitrance to Bioconversion: A 2-Year Comparative Analysis of Field-Grown Lines Modified for Target Gene or Genetic Element Expression (open access)

Transgenic Switchgrass (Panicum Virgatum L.) Targeted for Reduced Recalcitrance to Bioconversion: A 2-Year Comparative Analysis of Field-Grown Lines Modified for Target Gene or Genetic Element Expression

This article discusses the investigation of clones of plants representing independent transgenic events and their respective nontransgenic control lines for biomass yield, carbohydrate composition and recalcitrance to bioconversion via separate hydrolysis and fermentation to yield ethanol.
Date: August 18, 2016
Creator: Dumitrache, Alexandru; Natzke, Jace; Rodriguez, Miguel, Jr.; Yee, Kelsey L.; Thompson, Olivia A.; Poovaiah, Charleson R. et al.
Object Type: Article
System: The UNT Digital Library
Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil (open access)

Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil

This article proposes a model for the accumulation of substantial levels of cyclopropane fatty acids (CPA) in camelina, and discusses the differences between CPA accumulation in camelina and Arabidopsis.
Date: July 10, 2017
Creator: Yu, Xiao-Hong; Cahoon, Rebecca E.; Horn, Patrick J.; Shi, Hai; Prakash, Richa R.; Cai, Yuanheng et al.
Object Type: Article
System: The UNT Digital Library
Overexpression of fatty acid amide hydrolase induces early flowering in Arabidopsis thaliana (open access)

Overexpression of fatty acid amide hydrolase induces early flowering in Arabidopsis thaliana

Article investigates the nature of the early flowering phenotype of AtFAAH overexpression.
Date: February 20, 2012
Creator: Teaster, Neal D.; Keereetaweep, Jantana; Kilaru, Aruna; Wang, Yuh-Shuh; Tang, Yuhong; Tran, Christopher N.-Q. et al.
Object Type: Article
System: The UNT Digital Library
Peptide signaling molecules CLE5 and CLE6 affect Arabidopsis leaf shape downstream of leaf patterning transcription factors and auxin (open access)

Peptide signaling molecules CLE5 and CLE6 affect Arabidopsis leaf shape downstream of leaf patterning transcription factors and auxin

Article describes a role in Arabidopsis leaf development for two members of the CLAVATA3/ESR‐RELATED peptide family, CLE5 and CLE6, which lie adjacent to each other on chromosome 2.
Date: December 20, 2018
Creator: DiGennaro, Peter; Grienenberger, Etienne; Dao, Thai Q.; Jun, Ji Hyung & Fletcher, Jennifer C.
Object Type: Article
System: The UNT Digital Library
Compartmentation of Triacylglycerol Accumulation in Plants (open access)

Compartmentation of Triacylglycerol Accumulation in Plants

Article studying an underappreciated complexity in pathways for synthesis and accumulation of Triacylglycerols from plants, familiar to most people as vegetable oils.
Date: January 20, 2012
Creator: Chapman, Kent Dean & Ohlrogge, John B.
Object Type: Article
System: The UNT Digital Library
Parental transgenerational epigenetic inheritance related to dietary crude oil exposure in Danio rerio (open access)

Parental transgenerational epigenetic inheritance related to dietary crude oil exposure in Danio rerio

Article investigating the transgenerational inheritance from both parental lines in zebrafish. Adult zebrafish were separated into female and male groups exposed for 21 days to either a control diet or to a diet containing water accommodated fractions of crude oil. To determine the maternal and paternal influence on their offspring, the authors evaluated responses from molecular to whole organismal levels in both generations.
Date: January 22, 2020
Creator: Bautista, Naim M.; Crespel, Amélie; Crossley, Janna; Padilla, Pamela A. & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation (open access)

SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation

Article demonstrating that part of the function of two SEIPIN isoforms in Arabidopsis (Arabidopsis thaliana), AtSEIPIN2 and AtSEIPIN3, may depend on their interaction with the vesicle-associated membrane protein (VAMP)–associated protein (VAP) family member AtVAP27-1. The authors used a combination of biochemical, cell biology, and genetics approaches to show that AtVAP27-1 interacts with the N termini of AtSEIPIN2 and AtSEIPIN3 and likely supports the normal formation of LDs. This insight indicates that the ER membrane tethering machinery in plant cells could play a role with select SEIPIN isoforms in LD biogenesis at the ER, and additional experimental evidence in Saccharomyces cerevisiae supports the possibility that this interaction may be important in other eukaryotic systems.
Date: July 20, 2020
Creator: Greer, Michael Scott; Cai, Yingqi; Gidda, Satinder K.; Esnay, Nicolas; Kretzschmar, Franziska K.; Seay, Damien C. et al.
Object Type: Article
System: The UNT Digital Library
Structural analysis of a plant fatty acid amide hydrolase provides insights into the evolutionary diversity of bioactive acylethanolamides (open access)

Structural analysis of a plant fatty acid amide hydrolase provides insights into the evolutionary diversity of bioactive acylethanolamides

Article reporting the three-dimensional crystal structures of the signal-terminating enzyme fatty acid amide hydrolase (FAAH) from Arabidopsis in its apo and ligand-bound forms at 2.1- and 3.2-Å resolutions, respectively.
Date: March 20, 2019
Creator: Aziz, Mina; Wang, Xiaoqiang; Tripathi, Ashutosh; Bankaitis, Vytas A. & Chapman, Kent Dean
Object Type: Article
System: The UNT Digital Library
Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism (open access)

Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism

Article evaluating the metabolic and transcriptional responses to AtWRI1 and AtDGAT1 expression in soybean seeds.
Date: March 20, 2022
Creator: Arias, Cintia Lucía; Quach, Truyen; Huynh, Tu; Nguyen, Hanh; Moretti, Ademar; Shi, Yu et al.
Object Type: Article
System: The UNT Digital Library