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Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data (open access)

Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data

Article describes how taxonomic profiling of ancient metagenomic samples is challenging due to the accumulation of specific damage patterns on DNA over time. The authors performed a comprehensive evaluation on simulated metagenomes representing human dental calculus microbiome, with the level of DNA damage successively raised to mimic modern to ancient metagenomes.
Date: October 2, 2023
Creator: Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata) (open access)

Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata)

Article describes how kudzu produces both O- and C-glycosylated isoflavones, with puerarin (C-glucosyl daidzein) as an important bioactive compound. The authors go on to explain how expression of recombinant UGTs in Escherichia coli and candidate C-glycosyltransferases in Medicago truncatula were used to explore substrate specificities, and gene silencing of UGT and key isoflavone biosynthetic genes in kudzu hairy roots employed to test hypotheses concerning the substrate(s) for C-glycosylation.
Date: September 2, 2022
Creator: Adolfo, Laci M.; Burks, David J.; Rao, Xiaolan; Alvarez-Hernandez, Anislay & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements (open access)

The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements

Article reporting a chromosome-scale assembly of the T. sinense genome.
Date: December 2, 2020
Creator: Dixon, R. A.; Liu, Ping-Li; Zhang, Xi; Mao, Jian-Feng; Hong, Yan-Ming; Zhang, Ren-Gang et al.
Object Type: Article
System: The UNT Digital Library
Isorhamnetin Inhibits Proliferation and Invasion and Induces Apoptosis through the Modulation of Peroxisome Proliferator-activated Receptor γ Activation Pathway in Gastric Cancer (open access)

Isorhamnetin Inhibits Proliferation and Invasion and Induces Apoptosis through the Modulation of Peroxisome Proliferator-activated Receptor γ Activation Pathway in Gastric Cancer

Article investigating the potential effects of isorhamnetin (IH), a 3′-O-methylated metabolite of quercetin on the peroxisome proliferator-activated receptor γ (PPAR-γ) signaling cascade using proteomics technology platform, GC cell lines, and xenograft mice model. The study y proposes a novel agent for gastric cancer treatment.
Date: November 2, 2012
Creator: Ramachandran, Lalitha; Manu, Kanjoormana Aryan; Shanmugam, Muthu K.; Li, Feng; Siveen, Kodappully Sivaraman; Vali, Shireen et al.
Object Type: Article
System: The UNT Digital Library
A cytoskeletal function for PBRM1 reading methylated microtubules (open access)

A cytoskeletal function for PBRM1 reading methylated microtubules

This article shows that that the coordinated read-write activity of the epigenetic machinery extends to the cytoskeleton, with PBRM1 in the PBAF chromatin remodeling complex reading microtubule methyl marks written by the SETD2 histone methyltransferase. This article opens a previously unknown window into how chromatin remodeler defects can drive disease via both epigenetic and cytoskeletal dysfunction.
Date: April 2, 2021
Creator: Karki, Menuka; Jangid, Rahul K.; Anish, Ramakrishnan; Seervai, Riyad N. H.; Bertocchio, Jean-Phillipe; Hotta, Takashi et al.
Object Type: Article
System: The UNT Digital Library
Effect of increased embryonic temperature during developmental windows on survival, morphology and oxygen consumption of rainbow trout (Oncorhynchus mykiss) (open access)

Effect of increased embryonic temperature during developmental windows on survival, morphology and oxygen consumption of rainbow trout (Oncorhynchus mykiss)

This article applies a developmental 3-dimensional critical window experimental design for a vertebrate, using time, temperature, and phenotypic response (i.e., variables measured). To assess thermal effects on fish development, the authors examined trout hatchling phenotypes following rearing in constant temperatures (5, 10, 15 and 17.5 °C) and following exposure to increased temperature above 5 °C during specific developmental windows.
Date: November 2, 2020
Creator: Melendez, Christopher L. & Mueller, Casey A.
Object Type: Article
System: The UNT Digital Library
Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1 (open access)

Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1

Article using a combination of biochemical and genetic approaches to show how ABA can regulate lignin biosynthesis. This work provides a basis for designing trees and other biomass plants that are better adapted to stress and climate change. This article includes a correction on the first page.
Date: February 2, 2021
Creator: Liu, Chang; Yu, Hasi; Rao, Xiaolan; Li, Laigeng & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Elucidating the multifunctional role of the cell wall components in the maize exploitation (open access)

Elucidating the multifunctional role of the cell wall components in the maize exploitation

Article on the composition of the four cell wall fractions in diverse maize genotypes and to understand how this composition influences the resistance to pests, ethanol capacity and digestibility. Results evidence that there is no maize cell wall ideotype among the tested for optimal performance for various uses, and maize plants should be specifically bred for each particular application.
Date: June 2, 2021
Creator: López-Malvar, Ana; Malvar, Rosa Ana; Souto, Xose Carlos; Gomez, Leonardo Dario; Simister, Rachael; Encina, Antonio et al.
Object Type: Article
System: The UNT Digital Library
Epigenetic modulation of inflammation and synaptic plasticity promotes resilience against stress in mice (open access)

Epigenetic modulation of inflammation and synaptic plasticity promotes resilience against stress in mice

This article uses high-throughput screening to identify two phytochemicals that are effective in promoting resilience against stress by moduling brain synaptic plasticity and peripheral inflammation.
Date: September 7, 2016
Creator: Wang, Jun; Hodes, Georgia E.; Zhang, Hongxing; Zhang, Song; Zhao, Wei; Golden, Sam A. et al.
Object Type: Article
System: The UNT Digital Library
Extensive shared polymorphism at non-MHC immune genes in recently diverged North American prairie grouse (open access)

Extensive shared polymorphism at non-MHC immune genes in recently diverged North American prairie grouse

This article investigates the patterns of shared polymorphism and selection at non-MHC immune genes in five grouse species from Centrocercus and Tympanuchus genera.
Date: August 2, 2017
Creator: Minias, Piotr; Bateson, Zachary W.; Whittingham, Linda A.; Johnson, Jeff A.; Oyler-McCance, Sara & Dunn, Peter O.
Object Type: Article
System: The UNT Digital Library
Synthesis, biological evaluation and in silico and in vitro mode-of-action analysis of novel dihydropyrimidones targeting PPAR-γ (open access)

Synthesis, biological evaluation and in silico and in vitro mode-of-action analysis of novel dihydropyrimidones targeting PPAR-γ

This article reports the synthesis and related biological activity of novel dihydropyrimidones.
Date: August 15, 2014
Creator: Bharathkumar, Hanumantharayappa; Paricharak, Shardul; Dinesh, K. R.; Siveen, Kodappully Sivaraman; Fuchs, Julian E.; Rangappa, Shobith et al.
Object Type: Article
System: The UNT Digital Library
Mouse fat storage-inducing transmembrance protein 2 (FIT2) promotes lipid droplet accumulation in plants (open access)

Mouse fat storage-inducing transmembrance protein 2 (FIT2) promotes lipid droplet accumulation in plants

This article discusses the test of the function of FIT2 in plant cells by ectopically expressing mouse (Mus musculus) FIT2 in Nicotiana tabacum suspension-cultured cells, Nicotiana benthamiana leaves and Arabidopsis thaliana plants.
Date: December 2, 2016
Creator: Cai, Yingqi; McClinchie, Elizabeth; Price, Ann; Nguyen, Thuy N.; Gidda, Satinder K.; Watt, Samantha C. et al.
Object Type: Article
System: The UNT Digital Library
Increased disease susceptibility of transgenic tobacco plants with suppressed levels of preformed phenylpropanoid products (open access)

Increased disease susceptibility of transgenic tobacco plants with suppressed levels of preformed phenylpropanoid products

Article on increased disease susceptibility of transgenic tobacco plants with suppressed levels of preformed phenylpropanoid products.
Date: August 2, 1994
Creator: Maher, Eileen A.; Bate, Nicholas J.; Ni, Weiting; Elkind, Yonatan; Dixon, R. A. & Lamb, Christopher J.
Object Type: Article
System: The UNT Digital Library
Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula (open access)

Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula

Article on genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula.
Date: February 2, 2005
Creator: Achnine, Lahoucine; Huhman, David; Farag, Mohamed A.; Sumner, Lloyd W.; Blount, Jack W. & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Proanthocyanidins - a final frontier in flavonoid research? (open access)

Proanthocyanidins - a final frontier in flavonoid research?

Article on proanthocyanidins -- a final frontier in flavonoid research?
Date: November 2, 2004
Creator: Dixon, R. A.; Xie, De-Yu & Sharma, Shashi B.
Object Type: Article
System: The UNT Digital Library
Phenylalanine ammonia-lyase (PAL) from tobacco (Nicotiana tabacum): characterization of the four tobacco PAL genes and active heterotetrameric enzymes (open access)

Phenylalanine ammonia-lyase (PAL) from tobacco (Nicotiana tabacum): characterization of the four tobacco PAL genes and active heterotetrameric enzymes

Article on phenylalanine ammonia-lyase (PAL) from tobacco (Nicotiana tabacum) and characterization of the four tobacco PAL genes and active heterotetrameric enzymes.
Date: September 2, 2009
Creator: Reichert, Angelika I.; He, Xian-Zhi & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Thymoquinone Inhibits Tumor Growth and Induces Apoptosis in a Breast Cancer Xenograft Mouse Model: The Role of p38 MAPK and ROS (open access)

Thymoquinone Inhibits Tumor Growth and Induces Apoptosis in a Breast Cancer Xenograft Mouse Model: The Role of p38 MAPK and ROS

Article on thymoquinone inhibiting tumor growth and inducing apoptosis in a breast cancer xenograft mouse model and the role of p38 MAPK and ROS.
Date: October 2, 2013
Creator: Woo, Chern Chiuh; Hsu, Annie; Kumar, Alan Prem; Sethi, Gautam & Tan, Benny K-H
Object Type: Article
System: The UNT Digital Library
Isorhamnetin Inhibits Proliferation and Invasion and Induces Apoptosis through the Modulation of Peroxisome Proliferator-activated Receptor ϒ Activation Pathway in Gastric Center (open access)

Isorhamnetin Inhibits Proliferation and Invasion and Induces Apoptosis through the Modulation of Peroxisome Proliferator-activated Receptor ϒ Activation Pathway in Gastric Center

Article on PPAR-γ, a nuclear transcription factor that plays a critical role in the development of gastric cancer.
Date: November 2, 2012
Creator: Ramachandran, Lalitha; Manu, Kanjoormana Aryan; Shanmugam, Muthu K.; Li, Feng; Siveen, Kodappully Sivaraman; Vali, Shireen et al.
Object Type: Article
System: The UNT Digital Library
Targeting the STAT3 singaling pathway in cancer: Role of synthetic and natural inhibitors (open access)

Targeting the STAT3 singaling pathway in cancer: Role of synthetic and natural inhibitors

Article on targeting the STAT3 signaling pathway in cancer and the role of synthetic and natural inhibitors.
Date: January 2, 2014
Creator: Siveen, Kodappully Sivaraman; Sikka, Sakshi; Surana, Rohit; Dai, Xiaoyun; Zhang, Jingwen; Kumar, Alan Prem et al.
Object Type: Article
System: The UNT Digital Library
A web-based multi-genome synteny viewer for customized data (open access)

A web-based multi-genome synteny viewer for customized data

This article discusses a web-based multi-genome synteny viewer for customized data.
Date: August 2, 2012
Creator: Revanna, Kashi V.; Munro, Daniel; Gao, Alvin; Chiu, Chi-Chen; Pathak, Anil & Dong, Qunfeng
Object Type: Article
System: The UNT Digital Library

Potential Transcriptional Activation of the Foxn1 Gene by the Runx1 Factor

Presentation for the 2009 University Scholars Day at the University of North Texas discussing research on the potential transcriptional activation of the Foxn1 gene by the Runx1 factor.
Date: April 2, 2009
Creator: Seloff, Katelyn & Raveh, Eli
Object Type: Presentation
System: The UNT Digital Library

Reactive Oxygen Species Role In The Closure of The Ductus Arteriosus (DA)

Presentation for the 2009 University Scholars Day at the University of North Texas discussing research on reactive oxygen species role in the closure of the Ductus Arteriosus (DA).
Date: April 2, 2009
Creator: Simpson, Aaron & Dzialowski, Edward M. (Edward Michael)
Object Type: Presentation
System: The UNT Digital Library
Tuberculosis and the Asian Population of Tarrant County, Texas (open access)

Tuberculosis and the Asian Population of Tarrant County, Texas

The research in this paper examines the incidence of tuberculosis (TB) among foreign-born Asians living in Tarrant County, Texas.
Date: April 2, 2009
Creator: McCallister, Jessica & Oppong, Joseph R.
Object Type: Paper
System: The UNT Digital Library

Searching for the Genes that Encode Nodulation Symbiosis Between Medicago Truncatula and Rhizobia

Presentation for the 2009 University Scholars Day at the University of North Texas discussing research on searching for the genes that encode nodulation symbiosis between medicago truncatula and rhizobia.
Date: April 2, 2009
Creator: Casady, Richard William & Dickstein, Rebecca
Object Type: Presentation
System: The UNT Digital Library