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Detection of Pathogens Using a Handheld PCR Thermocycler (open access)

Detection of Pathogens Using a Handheld PCR Thermocycler

None
Date: May 14, 2001
Creator: Emanuel, P; Hadfield, T; Koopman, R; Richards, J; Benett, W; Stratton, P et al.
System: The UNT Digital Library
Waveguide Fabrication in Fused Silica Using Tightly Focused Femtosecond Laser Pulses (open access)

Waveguide Fabrication in Fused Silica Using Tightly Focused Femtosecond Laser Pulses

Refractive index changes have been induced inside bulk fused silica by using femtosecond (fs) laser pulses tightly focused inside the material. Waveguides have been fabricated inside the glass by scanning the glass with respect to the focal point of the laser beam. The refractive index change is estimated to be {approx} 10{sup -4}. Other more complex three-dimensional structures have also been fabricated (curved waveguides, splitters, and interferometers). We also report on fluorescence spectroscopy of the fs-modified fused silica using a confocal microscopy setup. Using a 488 nm excitation source, a fluorescence at 630 nm is observed from the modified glass, which is attributed to the presence of non-bridging oxygen hole center (NBOHC) defects created by the fs pulses. The fluorescence decays with prolonged exposure to the 488 nm light, indicating that the defects are being photobleached by the excitation light.
Date: December 14, 2001
Creator: Chan, J W; Huser, T; Risbud, S H & Krol, D M
System: The UNT Digital Library
Accuracy and reliability of China's energy statistics (open access)

Accuracy and reliability of China's energy statistics

Many observers have raised doubts about the accuracy and reliability of China's energy statistics, which show an unprecedented decline in recent years, while reported economic growth has remained strong. This paper explores the internal consistency of China's energy statistics from 1990 to 2000, coverage and reporting issues, and the state of the statistical reporting system. Available information suggests that, while energy statistics were probably relatively good in the early 1990s, their quality has declined since the mid-1990s. China's energy statistics should be treated as a starting point for analysis, and explicit judgments regarding ranges of uncertainty should accompany any conclusions.
Date: September 14, 2001
Creator: Sinton, Jonathan E.
System: The UNT Digital Library
A Cartesian grid embedded boundary method for the heat equation on irregular domains (open access)

A Cartesian grid embedded boundary method for the heat equation on irregular domains

We present an algorithm for solving the heat equation on irregular time-dependent domains. It is based on the Cartesian grid embedded boundary algorithm of Johansen and Colella (J. Comput. Phys. 147(2):60--85) for discretizing Poisson's equation, combined with a second-order accurate discretization of the time derivative. This leads to a method that is second-order accurate in space and time. For the case where the boundary is moving, we convert the moving-boundary problem to a sequence of fixed-boundary problems, combined with an extrapolation procedure to initialize values that are uncovered as the boundary moves. We find that, in the moving boundary case, the use of Crank--Nicolson time discretization is unstable, requiring us to use the L{sub 0}-stable implicit Runge--Kutta method of Twizell, Gumel, and Arigu.
Date: March 14, 2001
Creator: McCorquodale, Peter; Colella, Phillip & Johansen, Hans
System: The UNT Digital Library
Magnet R&D for future colliders (open access)

Magnet R&D for future colliders

High-energy colliders complementing and expanding the physics reach of LHC are presently under study in the United States, Europe and Japan. The magnet system is a major cost driver for hadron colliders at the energy frontier, and critical to the successful operation of muon colliders. Under most scenarios, magnet design as well as vacuum and cryogenic systems are complicated by high radiation loads. Magnet R&D programs are underway worldwide to take advantage of new developments in superconducting materials, achieve higher efficiency and simplify fabrication while preserving accelerator-class field quality. A review of recent progress in magnet technology for future colliders is presented, with emphasis on the most innovative design concepts and fabrication techniques.
Date: June 14, 2001
Creator: Sabbi, Gian Luca
System: The UNT Digital Library
New insights in third phase formation in the U(VI)-HNO{sub 3}, TBP-alkane system. (open access)

New insights in third phase formation in the U(VI)-HNO{sub 3}, TBP-alkane system.

In this work, the system U(VI)-HNO{sub 3}-tributylphosphate (TBP)-n-dodecane has been revisited with the objective of gaining coordination chemistry and structural information on the species that are formed in the organic phase before and after third phase formation. Chemical analyses, spectroscopic and EXAFS data indicate that U(VI) is extracted as the UO{sub 2}(NO{sub 3}){sub 2} {center_dot} 2TBP adduct, while the third phase species has the composition UO{sub 2}(NO{sub 3}){sub 2} {center_dot} 2TBP {center_dot} HNO{sub 3}. Small-angle neutron scattering (SANS) data reveal the presence in the organic phase, both before and after phase splitting, of ellipsoidal aggregates whose formation seems to depend more on the extraction of HNO{sub 3} than that of U(VI).
Date: June 14, 2001
Creator: Jensen, M. P.; Chiarizia, R.; Ferraro, J. R.; Borkowski, M.; Nash, K. L.; Thiyagarajan, P. et al.
System: The UNT Digital Library
A spatial time series framework for modeling daily precipitationat regional scales (open access)

A spatial time series framework for modeling daily precipitationat regional scales

In this paper, a framework for stochastic spatiotemporal modeling of daily precipitation in a hindcast mode is presented. Observed precipitation levels in space and time are modeled as a joint realization of a collection of space-indexed time series, one for each spatial location. Time series model parameters are spatially varying, thus capturing space-time interactions. Stochastic simulation, i.e., the procedure of generating alternative precipitation realizations (synthetic fields) over the space-time domain of interest (Deutsch and Journel, 1998), is employed for ensemble prediction. The simulated daily precipitation fields reproduce a data-based histogram and spatiotemporal covariance model, and identify the measured precipitation values at the rain gauges (conditional simulation). Such synthetic precipitation fields can be used in a Monte Carlo framework for risk analysis studies in hydrologic impact assessment investigations.
Date: November 14, 2001
Creator: Kyriakidis, Phaedon C.; Miller, Norman L. & Kim, Jinwon
System: The UNT Digital Library
Gauge unification in higher dimensions (open access)

Gauge unification in higher dimensions

A complete 5-dimensional SU(5) unified theory is constructed which, on compactification on the orbifold with two different Z{sub 2}'s (Z{sub 2} and Z{sub 2}{prime}), yields the minimal supersymmetric standard model. The orbifold accomplishes SU(5) gauge symmetry breaking, doublet-triplet splitting, and a vanishing of proton decay from operators of dimension 5. Until 4d supersymmetry is broken, all proton decay from dimension 4 and dimension 5 operators is forced to vanish by an exact U(1){sub R} symmetry. Quarks and leptons and their Yukawa interactions are located at the Z{sub 2} orbifold fixed points, where SU(5) is unbroken. A new mechanism for introducing SU(5) breaking into the quark and lepton masses is introduced, which originates from the SU(5) violation in the zero-mode structure of bulk multiplets. Even though SU(5) is absent at the Z{sub 2}{prime} orbifold fixed point, the brane threshold corrections to gauge coupling unification are argued to be negligibly small, while the logarithmic corrections are small and in a direction which improves the agreement with the experimental measurements of the gauge couplings. Furthermore, the X gauge boson mass is lowered, so that p {yields} e{sup +}{pi}{sup 0} is expected with a rate within about one order of magnitude of the current …
Date: January 14, 2001
Creator: Hall, Lawrence & Nomura, Yasunori
System: The UNT Digital Library
Thermodynamics of the extraction of selected metal ions by Di(2-ethylhexyl) alkylenediphosphonic acids. (open access)

Thermodynamics of the extraction of selected metal ions by Di(2-ethylhexyl) alkylenediphosphonic acids.

The thermodynamics of extraction of Am(III), Sr(II) and U(VI) from aqueous HNO{sub 3} solutions by o-xylene solutions of p,p'-de(2-ethylhexyl) methylene- (H{sub 2}DEH[MDP]), ethylene-(H{sub 2}DEH[EDP]), and butylene- (H{sub 2}DEH[BuDP]) disphosphonic acids has been studied by the temperature coefficient method in the 25.0 to 60.0 C range. Both extractive aggregation and extraction stoichiometries did not change with temperature. The extraction of Am(III) by H{sub 2}DEH[MDP], and that of U(VI) by all three extractants are strongly driven by both enthalpy and entropy variations. The extraction of Sr(II) by H{sub 2}DEH[MDP] is enthalpy driven. The extraction of Am(III) by H{sub 2}DEH[EDP] and H{sub 2}DEH[BuDP] is mainly driven by entropy changes. The extraction of Sr(II) by H{sub 2}DEH[EDP] and H{sub 2}DEH[BuDP] is characterized by an unfavorable entropy change and is not indicative of a micellar-type extraction mechanism.
Date: June 14, 2001
Creator: Otu, E. O. & Chiarizia, R.
System: The UNT Digital Library
Stochastic algorithms for the analysis of numerical flame simulations (open access)

Stochastic algorithms for the analysis of numerical flame simulations

Recent progress in simulation methodologies and new, high-performance parallel architectures have made it is possible to perform detailed simulations of multidimensional combustion phenomena using comprehensive kinetics mechanisms. However, as simulation complexity increases, it becomes increasingly difficult to extract detailed quantitative information about the flame from the numerical solution, particularly regarding the details of chemical processes. In this paper we present a new diagnostic tool for analysis of numerical simulations of combustion phenomena. Our approach is based on recasting an Eulerian flow solution in a Lagrangian frame. Unlike a conventional Lagrangian viewpoint in which we follow the evolution of a volume of the fluid, we instead follow specific chemical elements, e.g., carbon, nitrogen, etc., as they move through the system. From this perspective an ''atom'' is part of some molecule that is transported through the domain by advection and diffusion. Reactions ca use the atom to shift from one species to another with the subsequent transport given by the movement of the new species. We represent these processes using a stochastic particle formulation that treats advection deterministically and models diffusion as a suitable random-walk process. Within this probabilistic framework, reactions can be viewed as a Markov process transforming molecule to molecule …
Date: December 14, 2001
Creator: Bell, John B.; Day, Marcus S.; Grcar, Joseph F. & Lijewski, Michael J.
System: The UNT Digital Library
Detailed modeling and laser-induced fluorescence imaging of nitric oxide in a NH(i)-seeded non-premixed methane/air flame (open access)

Detailed modeling and laser-induced fluorescence imaging of nitric oxide in a NH(i)-seeded non-premixed methane/air flame

In this paper we study the formation of NO in laminar, nitrogen diluted methane diffusion flames that are seeded with ammonia in the fuel stream. We have performed numerical simulations with detailed chemistry as well as laser-induced fluorescence imaging measurements for a range of ammonia injection rates. For comparison with the experimental data, synthetic LIF images are calculated based on the numerical data accounting for temperature and fluorescence quenching effects. We demonstrate good agreement between measurements and computations. The LIF corrections inferred from the simulation are then used to calculate absolute NO mole fractions from the measured signal.The NO formation in both doped and undoped flames occurs in the flame sheet. In the undoped flame, four different mechanisms including thermal and prompt NO appear to contribute to NO formation. As the NH3 seeding level increases, fuel-NO becomes the dominant mechanism and N2 shifts from being a net reactant to being a net product. Nitric oxide in the undoped flame as well as in the core region of the doped flames are underpredicted by the model; we attribute this mainly to inaccuracies in the NO recycling chemistry on the fuel-rich side of the flame sheet.
Date: December 14, 2001
Creator: Bell, John B.; Day, Marcus S.; Grcar, Joseph F.; Bessler, Wolfgang G.; Schulz, Christof; Glarborg, Peter et al.
System: The UNT Digital Library
Sum-frequency spectroscopic studies of ice interfaces (open access)

Sum-frequency spectroscopic studies of ice interfaces

None
Date: December 14, 2001
Creator: Wei, Xing; Miranda, Paulo B.; Zhang, Chun & Shen, Y.R.
System: The UNT Digital Library
Safety Grounding Approach for the National Ignition Facility Power Conditioning System (open access)

Safety Grounding Approach for the National Ignition Facility Power Conditioning System

This paper describes a set of analyses and tests performed to evaluate approaches to provide a safe and robust grounding approach for the main Power Conditioning System (PCS) in the National Ignition Facility (NIF) facility presently under construction at the Lawrence Livermore National Laboratory (LLNL). The Power Conditioning System consists of up to 192 capacitor bank modules, each storing 2.2 MJ and capable of producing a peak current over 500 kA. The grounding system must minimize touch potentials associated with operation of the Power Conditioning System. In the event of severe faults, the system must assure that the energy delivered to a person through contact with ''grounded'' structures is very low. Based on computer modeling and low-voltage, low-current tests, we have concluded that the most effective approach is a set of metal enclosures around the output cables (effectively heavy-wall closed cable trays) extending from the capacitor bank modules to their flashlamp loads. This paper will discuss the safety standards identified for this application, the approach to meeting the standards, and the predicted performance of the safety system.
Date: June 14, 2001
Creator: Hammon, J; E, Fulkerson S; Gagnon, B & Anderson, R
System: The UNT Digital Library
Analysis of Combustion Chamber Deposits by ESI-TOF-MS and MALDI-TOF-MS (open access)

Analysis of Combustion Chamber Deposits by ESI-TOF-MS and MALDI-TOF-MS

Combustion chamber deposits (CCDs) in internal combustion engines have been studied by various techniques to understand the relationship of performance degradation with deposit quantity and structure. XPS, XAS, NMR, and elemental analysis have offered insight into the bulk structure of C, H, N, O and metal components [1]. MS has offered some information about compound structure, but results are limited due to the insolubility and complexity of the materials. Recent advances in MS have opened new possibilities for analysis of CCDs. Here we report initial findings on the carbon structure of these deposits determined by ESI-TOF-MS and MADLI-TOF-MS.
Date: June 14, 2001
Creator: Reynolds, J G; Shields, S J & Roos, J W
System: The UNT Digital Library
Phase Transformation Hysteresis in a Plutonium Alloy System: Modeling the Resistivity during the Transformation (open access)

Phase Transformation Hysteresis in a Plutonium Alloy System: Modeling the Resistivity during the Transformation

We have induced, measured, and modeled the {delta}-{alpha}' martensitic transformation in a Pu-Ga alloy by a resistivity technique on a 2.8-mm diameter disk sample. Our measurements of the resistance by a 4-probe technique were consistent with the expected resistance obtained from a finite element analysis of the 4-point measurement of resistivity in our round disk configuration. Analysis by finite element methods of the postulated configuration of {alpha}' particles within model {delta} grains suggests that a considerable anisotropy in the resistivity may be obtained depending on the arrangement of the {alpha}' lens shaped particles within the grains. The resistivity of these grains departs from the series resistance model and can lead to significant errors in the predicted amount of the {alpha}' phase present in the microstructure. An underestimation of the amount of {alpha}' in the sample by 15%, or more, appears to be possible.
Date: November 14, 2001
Creator: Haslam, J. J.; Wall, M. A.; Johnson, D. L.; Mayhall, D. J. & Schwartz, A. J.
System: The UNT Digital Library
Tracking and Motion Analysis of Crack Propagations in Crystals for Molecular Dynamics (open access)

Tracking and Motion Analysis of Crack Propagations in Crystals for Molecular Dynamics

This paper presents a quantitative analysis for a discovery in molecular dynamics. Recent simulations have shown that velocities of crack propagations in crystals under certain conditions can become supersonic, which is contrary to classical physics. In this research, they present a framework for tracking and motion analysis of crack propagations in crystals. It includes line segment extraction based on Canny edge maps, feature selection based on physical properties, and subsequent tracking of primary and secondary wavefronts. This tracking is completely automated; it runs in real time on three 834-image sequences using forty 250 MHZ processors. Results supporting physical observations are presented in terms of both feature tracking and velocity analysis.
Date: May 14, 2001
Creator: Tsap, L V; Duchaineau, M & Goldgof, D B
System: The UNT Digital Library
Research and Development for X-Ray Optics and Diagnostics on the Linac Coherent Light Source (LCLS) (open access)

Research and Development for X-Ray Optics and Diagnostics on the Linac Coherent Light Source (LCLS)

The Linac Coherent Light Source (LCLS) is a 1.5 to 15 {angstrom}-wavelength free-electron laser (FEL), currently proposed for the Stanford Linear Accelerator Center (SLAC). The photon output consists of high brightness, transversely coherent pulses with duration <300 fs, together with a broad spontaneous spectrum with total power comparable to the coherent output. The output fluence, and pulse duration, pose special challenges for optical component and diagnostic designs. We first discuss the specific requirements for the initial scientific experiments, and our proposed solutions. We then describe the supporting research and development program that includes: experimental and theoretical material damage studies; high resolution multilayer design, fabrication, and testing; replicated closed-form optics design and manufacturing; BeB manufacturing; and low-z Fresnel lens design, fabrication and testing. Finally some novel concepts for optical components are presented.
Date: August 14, 2001
Creator: Wootton, A.; Arthur, J.; Barbee, T.; Bionta, R.; Jankowski, Alan Frederic; London, R. et al.
System: The UNT Digital Library
Analysis of Combustion Chamber Deposits by ESI-TOF-MS and MALDI-TOF-MS (open access)

Analysis of Combustion Chamber Deposits by ESI-TOF-MS and MALDI-TOF-MS

Combustion chamber deposits (CCD) in internal combustion engines have been studied by various techniques to understand the relationship of performance degradation with deposit quantity and structure. XPS, XAS, NMR, and elemental analysis have offered insight into the bulk structure of C, H, N, O and metal components. MS has offered some information about compound structure, but results are limited due to the insolubility and complexity of the materials. Recently, we have reported on the metal structure by XPS and XAS of several deposits from a GM 3800 engine generated using a standard fuel and one that contains low levels of the gasoline anti-knock additive, MMT. Here we report the initial findings on the carbon structure of these deposits determined by ESI-TOF-MS and MADLI-TOF-MS.
Date: June 14, 2001
Creator: Reynolds, J G; Shields, S J & Roos, J W
System: The UNT Digital Library
Numerical Investigation into the Performance of a Rarefaction Shock Wave Cutter for Offshore Oil-Gas Platform Removal (open access)

Numerical Investigation into the Performance of a Rarefaction Shock Wave Cutter for Offshore Oil-Gas Platform Removal

The phase change in iron at 13 GPa results in the formation of rarefaction shock waves upon release. The interaction of multiple rarefaction shock waves induces high tensile stresses within a narrow zone, causing smooth spall. This effect can be exploited to sever cylindrical cross-section pipes, such as those supporting decommissioned offshore oil and gas platforms, using a minimal amount of explosive. Consequently, costs can be reduced and environmental impact minimized. They discuss the numerical techniques used to simulate rarefaction shock waves and the damage to steel resulting from the interaction of multiple rarefaction shock waves.
Date: June 14, 2001
Creator: Morris, J P; Glenn, L A; Antoun, T H & Lomov, I N
System: The UNT Digital Library
Detector Requirements to Curb Nuclear Smuggling (open access)

Detector Requirements to Curb Nuclear Smuggling

The problem of stopping nuclear smuggling of terrorist nuclear devices is a complex one, owing to the variety of pathways by which such a device can be transported. To fashion new detection systems that improve the chances of detecting such a device, it is important to know the various requirements and conditions that would be imposed on them by both the types of devices that might be smuggled and by the requirement that it not overly interfere with the transportation of legitimate goods. Requirements vary greatly from low-volume border crossings to high-volume industrial container ports, and the design of systems for them is likely to be quite different. There is also a further need to detect these devices if they are brought into a country via illicit routes, i.e., those which do not pass through customs posts, but travel overland though open space or to a smaller, unguarded airport or seaport. This paper describes some generic uses of detectors, how they need to be integrated into customs or other law enforcement systems, and what the specifications for such detectors might be.
Date: November 14, 2001
Creator: Erickson, S A
System: The UNT Digital Library
Second Order Optical Nonlinearities in Thermally Poled Phosphate Glasses (open access)

Second Order Optical Nonlinearities in Thermally Poled Phosphate Glasses

Second order optical nonlinearities were induced in commercial phosphate glasses (Schott, IOG-1) by the thermal poling technique. The induced {chi}{sup (2)} was measured via second harmonic generation using a fundamental beam from a 1064 nm mode-locked Nd:YAG laser. The nonlinear regions were characterized using the Maker-Fringe technique, in which the second harmonic signals were observed as a function of incident angle of the fundamental beam. The results show that the {chi}{sup (2)} profile has contributions from two distinct regions: a near-anodic surface region and a bulk. We have modeled the induced profile to fit our experimental results. The dependence of the induced nonlinearity on applied poling fields, temperatures and poling time is discussed.
Date: December 14, 2001
Creator: Thamboon, P & Krol, D
System: The UNT Digital Library
Partial (gamma)-Ray Cross Sections for the Reaction 239Pu(n,2n(gamma)i) and the 239Pu(n,2n) Cross Section (open access)

Partial (gamma)-Ray Cross Sections for the Reaction 239Pu(n,2n(gamma)i) and the 239Pu(n,2n) Cross Section

Absolute partial {gamma}-ray cross sections for production of discrete {gamma} rays in the {sup 239}Pu(n,2n{gamma}i){sup 238}Pu reaction have been measured. The experiments were performed at LANSCE/WNR on the 60R flight line. Reaction {gamma}-rays were measured using the large-scale Compton-suppressed array of Ge detectors, GEANIE. The motivation for this experiment, an overview of the partial {gamma}-ray cross-section measurement, and an introduction to the main experimental issues will be presented. The energy resolution of the Ge detectors allowed identification of reaction {gamma} rays above the background of sample radioactivity and fission {gamma} rays. The use of planar Ge detectors with their reduced sensitivity to neutron interactions and improved line shape was also important to the success of this experiment. Absolute partial {gamma}-ray cross sections are presented for the 6{sub 1}{sup +} {yields} 4{sub 1}{sup +} member of the ground state rotational band in {sup 238}Pu, together with miscellaneous other {gamma}-ray partial cross sections. The n,2n reaction cross section shape and magnitude as a function of neutron energy was extracted from these partial cross sections using nuclear modeling (enhanced Hauser-Feshbach) to relate partial {gamma}-ray cross sections to the n,2n cross section. The critical nuclear modeling issue is the ratio of a partial cross …
Date: September 14, 2001
Creator: Beacker, J. A.; Bernstein, L. A.; Younes, W.; McNabb, D. P.; Garrett, P. E.; Archer, D. et al.
System: The UNT Digital Library
Numerical simulation of premixed turbulent methane combustion (open access)

Numerical simulation of premixed turbulent methane combustion

In this paper we study the behavior of a premixed turbulent methane flame in three dimensions using numerical simulation. The simulations are performed using an adaptive time-dependent low Mach number combustion algorithm based on a second-order projection formulation that conserves both species mass and total enthalpy. The species and enthalpy equations are treated using an operator-split approach that incorporates stiff integration techniques for modeling detailed chemical kinetics. The methodology also incorporates a mixture model for differential diffusion. For the simulations presented here, methane chemistry and transport are modeled using the DRM-19 (19-species, 84-reaction) mechanism derived from the GRIMech-1.2 mechanism along with its associated thermodynamics and transport databases. We consider a lean flame with equivalence ratio 0.8 for two different levels of turbulent intensity. For each case we examine the basic structure of the flame including turbulent flame speed and flame surface area. The results indicate that flame wrinkling is the dominant factor leading to the increased turbulent flame speed. Joint probability distributions are computed to establish a correlation between heat release and curvature. We also investigate the effect of turbulent flame interaction on the flame chemistry. We identify specific flame intermediates that are sensitive to turbulence and explore various correlations …
Date: December 14, 2001
Creator: Bell, John B.; Day, Marcus S. & Grcar, Joseph F.
System: The UNT Digital Library
Comparison of Particulate Collection in Probes and on Filters (open access)

Comparison of Particulate Collection in Probes and on Filters

Major radionuclide emissions from the Department of Energy's Y-12 National Security Complex are nuclides of uranium which are emitted as a particulate. The radionuclide NESHAP regulation requires stack sampling to be conducted in accordance with ANST Standard N13.1, 1969. Appendix B of this standard requires in every case where sampling delivery lines are used that an evaluation should be made of deposition in these lines. A number of Y-12 Complex stacks are fitted with continuous samplers which draw particulate laden air through a probe and across a sample filter. One approach to evaluate line loss as required by the ANSI standard is to establish a representative factor that is used for all subsequent sampling efforts. Another approach is to conduct a routine probe wash procedure on an ongoing basis to account for line losses. In 1991, Y-12 National Security Complex personnel began routine probe washes as part of their sample collection procedure. Since then, 50-80 stacks have been sampled on a near continuous basis and probe washes have been conducted quarterly. Particulate collection in probes versus particulate collection on filters is recorded as a probe factor and probe factor trends for a 10-year period are available.
Date: June 14, 2001
Creator: Eaton, J.M. & Humphreys, M.P.
System: The UNT Digital Library