MINOS (Main Injector Neutrino Oscillation Search), is a long baseline neutrino experiment designed to search for neutrino oscillations using two detectors at Fermi National Accelerator Laboratory, IL (Near Detector) and Soudan, MN (Far Detector). It will study {nu}{sub {mu}} {yields} {nu}{sub {tau}} oscillations and make a measurement on the oscillation parameters, {Delta}m{sub 23}{sup 2} and sin{sup 2} 2{theta}{sub 23}, via a {nu}{sub {mu}} beam made at Fermilab. Charge current neutrino interactions in the MINOS detectors are of three types: quasi-elastic scattering (QEL), resonance scattering (RES) and deep inelastic scattering (DIS). Of these, quasi-elastic scattering leaves the cleanest signal with just one {mu} and one proton in the final state, thus rendering the reconstruction of the neutrino energy more accurate. This thesis will outline a method to separate QEL events from the others in the two detectors and perform a calculation of {Delta}m{sub 23}{sup 2} and sin{sup 2} 2{theta}{sub 23} using those events. The period under consideration was May 2005 to February 2006. The number of observed quasi-elastic events with energies below 10 GeV was 29, where the expected number was 60 {+-} 3. A fit to the energy distribution of these events gives {Delta}m{sub 23}{sup 2} = 2.91{sub -0.53}{sup +0.49}(stat){sub …

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This thesis is focused on an inclusive search of the t{bar t} {yields} E{sub T} + jets decay channel by means of neural network tools in proton antiproton collisions at {radical}s = 1.96 TeV recorded by the Collider Detector at Fermilab (CDF). At the Tevatron p{bar p} collider top quarks are mainly produced in pairs through quark-antiquark annihilation and gluon-gluon fusion processes; in the Standard Model description, the top quark then decays to a W boson and a b quark almost 100% of the times, so that its decay signatures are classified according to the W decay modes. When only one W decays leptonically, the t{bar t} event typically contains a charged lepton, missing transverse energy due to the presence of a neutrino escaping from the detector, and four high transverse momentum jets, two of which originate from b quarks. In this thesis we describe a t{bar t} production cross section measurement which uses data collected by a 'multijet' trigger, and selects this kind of top decays by requiring a high-P{sub T} neutrino signature and by using an optimized neural network to discriminate top quark pair production from backgrounds. In Chapter 1, a brief review of the Standard Model of …

The Main Injector Neutrino Oscillation Search (MINOS) is a two detector long-baseline neutrino experiment designed to study the disappearance of muon neutrinos. MINOS will test the {nu}{sub {mu}} {yields} {nu}{sub {tau}} oscillation hypothesis and measure precisely {Delta}m{sub 23}{sup 2} and sin{sup 2} 2{theta}{sub 23} oscillation parameters. The source of neutrinos for MINOS experiment is Fermilab's Neutrinos at the Main Injector (NuMI) beamline. The energy spectrum and the composition of the beam is measured at two locations, one close to the source and the other 735 km down-stream in the Soudan Mine Underground Laboratory in northern Minnesota. The precision measurement of the oscillation parameters requires an accurate prediction of the neutrino flux at the Far Detector. This thesis discusses the calculation of the neutrino flux at the Far Detector and its uncertainties. A technique that uses the Near Detector data to constrain the uncertainties in the calculation of the flux is described. The data corresponding to an exposure of 2.5 x 10{sup 20} protons on the NuMI target is presented and an energy dependent disappearance pattern predicted by neutrino oscillation hypotheses is observed in the Far Detector data. The fit to MINOS data, for given exposure, yields the best fit values …

A Monte Carlo study of a generic search for new resonances beyond the Standard Model (SM) in the CMS experiment is presented. The resonances are axigluon, coloron, E{sub 6} diquark, excited quark, W{prime}, Z{prime}, and the Randall-Sundrum graviton which decay to dijets. The dijet resonance cross section that the CMS can expect to discover at a 5{sigma} significance or to exclude at 95% confidence level for integrated luminosities of 100 pb{sup -1}, 1 fb{sup -1}, and 10 fb{sup -1} is evaluated. It is shown that a 5{sigma} discovery of a multi-TeV dijet resonance is possible for an axigluon, excited quark, and E{sub 6} diquark. However, a 5{sigma} discovery can not be projected with confidence for a W{prime}, Z{prime} and the Randall-Sundrum graviton. On the other hand, 95% CL exclusion mass regions can be measured for all resonances at high luminosities. In the second part of this dissertation, the analyses of the 2006 test beam data from the combined electromagnetic and hadronic barrel calorimeters are presented. The CMS barrel calorimeters response to a variety of beam particles in a wide momenta range (1 to 350 GeV/c) is measured. Furthermore, using these beam data, the expected performance of the barrel calorimeters to …

The study of the top quark pair production mechanism in proton-antiproton collisions at a center-of-mass energy of 1.96 TeV is described. The main subjects are the measurements of the top quark pair production cross section, the top quark mass and a search for a new particle decaying to the top quark pair. The analyses are based on 1.9 fb{sup -1} of data collected by the Collider Detector at Fermilab (CDF) Run II experiment between March 2002 and May 2007, using the lepton+jets events. The measured top quark pair production cross section is 8.2 {+-} 0.5 (stat.) {+-} 0.8 (syst.) {+-} 0.5 (lum.) pb, which is slightly higher than the standard model prediction at the top mass of 175 GeV/c{sup 2}. The top quark mass is an important parameter in the standard model, and also in the experimental studies. The measured top quark mass if 171.6 {+-} 2.0 (stat.) {+-} 1.3(syst.) GeV/c{sup 2}. Finally, they report on a search for a new gauge boson decaying to t{bar t}, which interferes with the standard model gluon in the q{bar q} {yields} t{bar t} production process. They call such a hypothetical particle a 'Massive Gluon'. The observed t{bar t} invariant mass distribution is …

The resonant production of tau-lepton pairs is as interesting for the study of Standard Model (SM) physics as the production of lighter leptons pairs. For new phenomena, such as Higgs boson production or in case new particles beyond the SM would arise, the detection of (resonant) pairs of tau leptons becomes much more interesting. This is due to the fact that tau leptons are much heavier than the other leptons, which increases the chance that these new phenomena would be observed first in this channel. Unfortunately their clean detection is far more difficult than that of muons or electrons. The cross section times branching ratio {sigma}{center_dot} Br for the process p{bar p} {yields} Z {yields} {tau}{sup +}{tau}{sup -} was measured at {radical}s = 1.96 GeV using 1.0 fb{sup -1} of data collected by the D0 experiment. This measurement was performed in the channel in which one of the tau leptons decays to a muon and neutrinos, while the other decays either hadronically or to an electron and neutrinos. A set of 1511 events, of which about 20% estimated background, passed all selection criteria. The trigger and muon reconstruction efficiencies, as well as the efficiency for track reconstruction were obtained from …

The author presents new measurements of the type Ia SN rate from the SDSS-II Supernova Survey. The SDSS-II Supernova Survey was carried out during the Fall months (Sept.-Nov.) of 2005-2007 and discovered {approx} 500 spectroscopically confirmed SNe Ia with densely sampled (once every {approx} 4 days), multi-color light curves. Additionally, the SDSS-II Supernova Survey has discovered several hundred SNe Ia candidates with well-measured light curves, but without spectroscopic confirmation of type. This total, achieved in 9 months of observing, represents {approx} 15-20% of the total SNe Ia discovered worldwide since 1885. The author describes some technical details of the SN Survey observations and SN search algorithms that contributed to the extremely high-yield of discovered SNe and that are important as context for the SDSS-II Supernova Survey SN Ia rate measurements.

We study the behavior of charged particles produced in association with Drell-Yan lepton-pairs in the region of the Z-boson in proton-antiproton collisions at 1.96 TeV. We use the direction of the Z-boson in each event to define 'toward', 'away', and 'transverse' regions. For Drell-Yan production (excluding the leptons) both the 'toward' and 'transverse' regions are very sensitive to the 'underlying event', which is defined as everything except the two hard scattered components. The data are corrected to the particle level and are then compared with several PYTHIA models (with multiple parton interactions) and HERWIG (without multiple parton interactions) at the particle level (i.e. generator level). The data are also compared with a previous analysis on the behavior of the 'underlying event' in high transverse momentum jet production. The goal is to produce data that can be used by the theorists to tune and improve the QCD Monte-Carlo models of the 'underlying event' that are used to simulate hadron-hadron collisions.

Images of the Bullet Cluster of galaxies in visible light, X-rays, and through gravitational lensing confirm that most of the matter in the universe is not composed of any known form of matter. The combined evidence from the dynamics of galaxies and clusters of galaxies, the cosmic microwave background, big bang nucleosynthesis, and other observations indicates that 80% of the universe's matter is dark, nearly collisionless, and cold. The identify of the dar, matter remains unknown, but weakly interacting massive particles (WIMPs) are a very good candidate. They are a natural part of many supersymmetric extensions to the standard model, and could be produced as a nonrelativistic, thermal relic in the early universe with about the right density to account for the missing mass. The dark matter of a galaxy should exist as a spherical or ellipsoidal cloud, called a 'halo' because it extends well past the edge of the visible galaxy. The Cryogenic Dark Matter Search (CDMS) seeks to directly detect interactions between WIMPs in the Milky Way's galactic dark matter halo using crystals of germanium and silicon. Our Z-sensitive ionization and phonon ('ZIP') detectors simultaneously measure both phonons and ionization produced by particle interactions. In order to find …

Supermassive black holes (SMBHs) are ubiquitous in the centers of galaxies. Their formation and subsequent evolution is inextricably linked to that of their host galaxies, and the study of galaxy formation is incomplete without the inclusion of SMBHs. The present work seeks to understand the growth and evolution of SMBHs through their interaction with the host galaxy and its environment. In the first part of the thesis (Chap. 2 and 3), we combine a simple semi-analytic model of outflows from active galactic nuclei (AGN) with a simulated dark matter density distribution to study the impact of SMBH feedback on cosmological scales. We find that constraints can be placed on the kinetic efficiency of such feedback using observations of the filling fraction of the Ly{alpha} forest. We also find that AGN feedback is energetic enough to redistribute baryons over cosmological distances, having potentially significant effects on the interpretation of cosmological data which are sensitive to the total matter density distribution (e.g. weak lensing). However, truly assessing the impact of AGN feedback in the universe necessitates large-dynamic range simulations with extensive treatment of baryonic physics to first model the fueling of SMBHs. In the second part of the thesis (Chap. 4-6) we …

A measurement of hadron production cross-sections for the simulation of accelerator neutrino beams and a search for muon neutrino to electron neutrino oscillations in the {Delta}m{sup 2} {approx} 1 eV{sup 2} region. This dissertation presents measurements from two different high energy physics experiments with a very strong connection: the Hadron Production (HARP) experiment located at CERN in Geneva, Switzerland, and the Mini Booster Neutrino Experiment (Mini-BooNE) located at Fermilab in Batavia, Illinois.

This thesis presents the results of an analysis of {nu}{sub {mu}} disappearance with the MINOS experiment, which studies the neutrino beam produced by the NuMI facility at Fermi National Accelerator Laboratory. The rates and energy spectra of charged current {nu}{sub {mu}} interactions are measured in two similar detectors, located at distances of 1 km and 735 km along the NuMI beamline. The Near Detector provides accurate measurements of the initial beam composition and energy, while the Far Detector is sensitive to the effects of neutrino oscillations. The analysis uses data collected between May 2005 and March 2007, corresponding to an exposure of 2.5 x 10{sup 20} protons on target. As part of the analysis, sophisticated software was developed to identify muon tracks in the detectors and to reconstruct muon kinematics. Events with reconstructed tracks were then analyzed using a multivariate technique to efficiently isolate a pure sample of charged current {nu}{sub {mu}} events. An extrapolation method was also developed, which produces accurate predictions of the Far Detector neutrino energy spectrum, based on data collected at the Near Detector. Finally, several techniques to improve the sensitivity of an oscillation measurement were implemented, and a full study of the systematic uncertainties was …

This dissertation describes a search for the pair production of scalar top quarks, {tilde t}{sub 1}, using a luminosity of 995 pb{sup -1} of data collected in p{bar p} collisions with the D0 detector at the Fermilab Tevatron Collider at a center-of-mass energy {radical}s = 1.96 TeV. Both scalar top quarks are assumed to decay into a charm quark and a neutralino, {tilde {chi}}{sub 1}{sup 0}, where {tilde {chi}}{sub 1}{sup 0} is the lightest supersymmetric particle. This leads to a final state with two acoplanar charm jets and missing transverse energy. The yield of such events in data is found to be consistent with the expectations from known standard model processes. Sets of {tilde t}{sub 1} and {tilde {chi}}{sub 1}{sup 0} masses are excluded at the 95% confidence level that substantially extend the domain excluded by previous searches. With the theoretical uncertainty on the {tilde t}{sub 1} pair production cross section taken into account, the largest limit for m{sub {tilde t}{sub 1}} is m{sub {tilde t}{sub 1}} > 150 GeV, for m{sub {tilde {chi}}{sub 1}{sup 0}} = 65 GeV.

The Mini-Booster neutrino experiment (MiniBooNE) at Fermi National Accelerator Laboratory (Fermilab) is designed to search for {nu}{sub {mu}} {yields} {nu}{sub e} appearance neutrino oscillations. Muon neutrino charged-current quasi-elastic (CCQE) interactions ({nu}{sub {mu}} + n {yields} {mu} + p) make up roughly 40% of our data sample, and it is used to constrain the background and cross sections for the oscillation analysis. Using high-statistics MiniBooNE CCQE data, the muon-neutrino CCQE cross section is measured. The nuclear model is tuned precisely using the MiniBooNE data. The measured total cross section is {sigma} = (1.058 {+-} 0.003 (stat) {+-} 0.111 (syst)) x 10{sup -38} cm{sup 2} at the MiniBooNE muon neutrino beam energy (700-800 MeV). {nu}{sub e} appearance candidate data is also used to search for Lorentz violation. Lorentz symmetry is one of the most fundamental symmetries in modern physics. Neutrino oscillations offer a new method to test it. We found that the MiniBooNE result is not well-described using Lorentz violation, however further investigation is required for a more conclusive result.

A search for the muon neutrino magnetic moment was conducted using the Mini-BooNE low energy neutrino data. The analysis was performed by analyzing the elastic scattering interactions of muon neutrinos on electrons. The analysis looked for an excess of elastic scattering events above the Standard Model prediction from which a limit on the neutrino magnetic could be set. In this thesis, we report an excess of 15.3 {+-} 6.6(stat){+-}4.1(syst) {nu}{sub {mu}e} events above the expected background. At 90% C.L., we derived a limit on the muon neutrino magnetic moment of 12.7 x 10{sup -10} {micro}{sub B}. The other analysis reported in this thesis is a measurement of charged current single pion production (CC{pi}{sup +}) to charged current quasi elastic (CCQE) interactions cross sections ratio. This measurement was performed with two different fitting algorithms and the results from both fitters are consistent with each other.

The author presents a measurement of p{bar p} {yields} Z{gamma} + X {yields} e{sup +}e{sup -}{gamma} + X production using proton-antiproton collisions data collected at the Collider Detector at Fermilab at a center of mass energy of 1.96 TeV. Z{gamma} production provides a direct test of the triple neutral gauge couplings. A measurement of Z{gamma} production cross section and search for anomalous ZZ{gamma} and Z{gamma}{gamma} couplings are presented. The data presented are from 1.1 fb{sup -1} of p{bar p} integrated luminosity collected at the CDF Detector. Electrons from Z decays are selected with E{sub t} > 20 Gev. Photons (E{sub t} > 7 GeV) are required to be well-separated from the electrons. There are 390 ee{gamma} candidate events found with 1.1 fb{sup -1} of data, compared to the SM prediction of 375.3 {+-} 25.2 events. The Standard Model prediction for the cross section for p{bar p} {yields} e{sup +}e{sup -}{gamma} + X production at {radical}s = 1.96 TeV is 4.5 {+-} 0.4 pb. The measured cross section is 4.7 {+-} 0.6 pb. The cross section and kinematic distributions of the ee{gamma} events are in good agreement with theoretical predictions. Limits on the ZZ{gamma} and Z{gamma}{gamma} couplings are extracted using the …

Particle physics deals with the fundamental building blocks of matter and their interactions. The vast number of subatomic particles can be reduced to twelve fundamental fermions, which interact by the exchange of spin-1 particles as described in the Standard Model (SM) of particle physics. The SM provides the best description of the subatomic world to date, despite the fact it does not include gravitation. Following the relation {lambda} = h/p, where h is Planck's constant, for the examination of physics at subatomic scales with size {lambda} probes with high momenta p are necessary. These high energies are accessible through particle colliders. Here, particles are accelerated and brought to collision at interaction points at which detectors are installed to record these particle collisions. Until the anticipated start-up of the Large Hadron Collider at CERN, the Tevatron collider at Fermilab near Chicago is the highest energy collider operating in the world, colliding protons and anti-protons at a center-of-mass energy of {radical}s = 1.96 TeV. Its two interaction points are covered by the multi purpose particle detectors D0 and CDF. During the first data-taking period, known as Run I, the Tevatron operated at a center-of-mass energy of 1.8 TeV. This run period lasted …

The neutral current neutrino-nucleon elastic interaction {nu} N {yields} {nu} N is a fundamental process of the weak interaction ideally suited for characterizing the structure of the nucleon neutral weak current. This process comprises {approx}18% of neutrino events in the neutrino oscillation experiment, MiniBooNE, ranking it as the experiment's third largest process. Using {approx}10% of MiniBooNE's available neutrino data, a sample of these events were identified and analyzed to determine the differential cross section as a function of the momentum transfer of the interaction, Q{sup 2}. This is the first measurement of a differential cross section with MiniBooNE data. From this analysis, a value for the nucleon axial mass M{sub A} was extracted to be 1.34 {+-} 0.25 GeV consistent with previous measurements. The integrated cross section for the Q{sup 2} range 0.189 {yields} 1.13 GeV{sup 2} was calculated to be (8.8 {+-} 0.6(stat) {+-} 0.2(syst)) x 10{sup -40} cm{sup 2}.

In a universe dominated by matter, the source of CP violation may explain one of the greatest mysteries in particle physics: what happened to the antimatter? The Standard Model successfully describes CP violation in the B{sup +} and B{sub d}{sup 0} systems, yet insufficiently accounts for the observed matter-antimatter asymmetry. The Standard Model predicts a small value of CP violation in the B{sub s}{sup 0} meson system, which has only recently been experimentally tested. A measurement of large, anomalous CP violation in the B{sub s}{sup 0} system would be a clear indication of new physics sources beyond the Standard Model. This dissertation describes a study of CP violation in approximately 2000 B{sub s}{sup 0} {yields} J/{psi}{phi} decays reconstructed in a 2.8 fb{sup -1} data sample collected by the D0 Run II detector at Fermi National Accelerator Laboratory in Batavia, Illinois. This data was provided by p{bar p} collisions at {radical}s = 1.96 TeV delivered by the Tevatron accelerator between April 2002 and August 2007. Flavor-tagged B{sub s}{sup 0} {yields} J/{psi}({mu}{sup +}{mu}{sup -}){phi}(K{sup +}K{sup -}) decays and an angular analysis are used to study the time evolution of the final state angular distributions. From this analysis, we measure the width difference …

We have measured the top quark mass with the dynamical likelihood method. The data corresponding to an integrated luminosity of 1.7fb{sup -1} was collected in proton antiproton collisions at a center of mass energy of 1.96 TeV with the CDF detector at Fermilab Tevatron during the period March 2002-March 2007. We select t{bar t} pair production candidates by requiring one high energy lepton and four jets, in which at least one of jets must be tagged as a b-jet. In order to reconstruct the top quark mass, we use the dynamical likelihood method based on maximum likelihood method where a likelihood is defined as the differential cross section multiplied by the transfer function from observed quantities to parton quantities, as a function of the top quark mass and the jet energy scale(JES). With this method, we measure the top quark mass to be 171.6 {+-} 2.0 (stat.+ JES) {+-} 1.3(syst.) = 171.6 {+-} 2.4 GeV/c{sup 2}.

As predicted by numerous extensions of the Standard Model, leptoquarks (LQ) are hypothetical bosons allowing lepton-quark transitions. Under the assumption that they couple only to quarks and leptons of the same generation, three generations of leptoquarks can be distinguished. The search for the pair production of second generation scalar leptoquarks has been carried out in p{bar p} collisions at {radical}s = 1.96TeV, using an integrated luminosity of 1 fb{sup -1} collected by the D0 experiment at the Tevatron collider between August 2002 and February 2006. Topologies arising from the LQ{ovr LQ} {yields} {mu}q{nu}q and LQ{ovr LQ} {yields} {mu}q{mu}q decay modes have been investigated. In order to maximize the available statistics, a method for the combination of various prescaled triggers with an inclusive OR has been developed. Since no excess of data over the Standard Model prediction has been observed, upper limits on the leptoquark pair production cross section have been derived at 95% confidence level as function of the leptoquark mass and the branching fraction {beta} = Br(LQ {yields} {mu}q), and are interpreted as lower limits on the leptoquark mass as function of {beta}. For {beta} = 1, {beta} = 1/2 and {beta} = 0.1, the combination of the two …

Research at the interface between biomolecules and inorganic nanocrystals has resulted in a great number of new discoveries. In part this arises from the synergistic duality of the system: biomolecules may act as self-assembly agents for organizing inorganic nanocrystals into functional materials; alternatively, nanocrystals may act as microscopic or spectroscopic labels for elucidating the behavior of complex biomolecular systems. However, success in either of these functions relies heavily uponthe ability to control the conjugation and assembly processes.In the work presented here, we first design a branched DNA scaffold which allows hybridization of DNA-nanocrystal monoconjugates to form discrete assemblies. Importantly, the asymmetry of the branched scaffold allows the formation of asymmetric2assemblies of nanocrystals. In the context of a self-assembled device, this can be considered a step toward the ability to engineer functionally distinct inputs and outputs.Next we develop an anion-exchange high performance liquid chromatography purification method which allows large gold nanocrystals attached to single strands of very short DNA to be purified. When two such complementary conjugates are hybridized, the large nanocrystals are brought into close proximity, allowing their plasmon resonances to couple. Such plasmon-coupled constructs are of interest both as optical interconnects for nanoscale devices and as `plasmon ruler? biomolecular …

We calculate the exclusion region in the parameter space of {nu}{sub {mu}} {yields} {nu}{sub e} oscillations of the LSND type using a combined fit to the reconstructed energy distributions of neutrino candidate samples from the MiniBooNE data obtained with two different particle identification methods. The two {nu}{sub e} candidate samples are included together with a high statistics sample of {nu}{sub {mu}} events in the definition of a {chi}{sup 2} statistic which includes the correlations between the energy intervals of all three samples and handles the event overlap between the {nu}{sub e} samples. The {nu}{sub {mu}} sample is introduced to constrain the effect of systematic uncertainties. This analysis increases the exclusion limit in the region {Delta}m{sup 2} {approx}< 1eV{sup 2} when compared with the result previously published by the collaboration, which used a different technique.