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A Masked Two-Coordinate Cobalt (I) Complex That Activates C-F Bonds (open access)

A Masked Two-Coordinate Cobalt (I) Complex That Activates C-F Bonds

This article discusses a masked two-coordinate cobalt(I) complex that activates C-F bonds.
Date: July 19, 2011
Creator: Dugan, Thomas R.; Sun, Xianru; Rybak-Akimova, Elena V.; Olatunji-Ojo, Olayinka; Cundari, Thomas R., 1964- & Holland, Patrick L.
System: The UNT Digital Library
Quantification of emotional bias by an emotional-gain model (open access)

Quantification of emotional bias by an emotional-gain model

Article accompanying a poster presentation for the 2011 Computational Neuroscience Annual Meeting. This article discusses the quantification of emotional bias by an emotional-gain model.
Date: July 18, 2011
Creator: Tam, Nicoladie D.
System: The UNT Digital Library
Quantification of fairness bias by a fairness-equity model (open access)

Quantification of fairness bias by a fairness-equity model

Article accompanying a poster presentation for the 2011 Computational Neuroscience Meeting. This article discusses the quantification of fairness bias by a fairness-equity model.
Date: July 18, 2011
Creator: Tam, Nicoladie D.
System: The UNT Digital Library
Gender difference of emotional bias in sharing love (open access)

Gender difference of emotional bias in sharing love

Article accompanying a poster presentation for the 2011 Computational Neuroscience Annual Meeting. This article discusses gender difference of emotional bias in sharing love.
Date: July 18, 2011
Creator: Tam, Nicoladie D.
System: The UNT Digital Library
Contributing factors in judgement of fairness by monetary value (open access)

Contributing factors in judgement of fairness by monetary value

Article accompanying a poster presentation for the 2011 Computational Neuroscience Annual Meeting. This article discusses research on contributing factors in the judgement of fairness by monetary value.
Date: July 18, 2011
Creator: Tam, Nicoladie D.
System: The UNT Digital Library
Stromatolites: why do we care? (open access)

Stromatolites: why do we care?

Article discussing stromatolites. The authors apply the method of Diffusion Entropy (DE) to the study of stromatolites by means of a two-dimensional procedure that makes it possible for us to compare the DE analysis to the results of a compression method.
Date: July 14, 2011
Creator: Ignaccolo, Massimiliano; Schwettmann, Arne; Failla, Roberto; Storrie-Lombardi, Michael C. & Grigolini, Paolo
System: The UNT Digital Library
Electronic properties of the graphene/6H-SiC(0001̅ ) interface: A first-principles study (open access)

Electronic properties of the graphene/6H-SiC(0001̅ ) interface: A first-principles study

This article discusses electronic properties of the graphene/6H-SiC(0001̅) interface.
Date: July 27, 2011
Creator: Jayasekera, Thushari; Xu, Shu; Kim, Ki Wook & Buongiorno Nardelli, Marco
System: The UNT Digital Library
Breakdown of the Onsager Principle as a Sign of Aging (open access)

Breakdown of the Onsager Principle as a Sign of Aging

Article discussing the breakdown of the Onsager principle as a sign of aging.
Date: July 19, 2011
Creator: Allegrini, Paolo; Aquino, Gerardo; Grigolini, Paolo; Palatella, Luigi & Rosa, Angelo
System: The UNT Digital Library
Valine 44 and Valine 45 of Human Glutiathione Sythetase are Key for Subunit Stability and Negative Cooperativity (open access)

Valine 44 and Valine 45 of Human Glutiathione Sythetase are Key for Subunit Stability and Negative Cooperativity

Article discussing Valine 44 and Valine 45 of human glutathione synthetase as the key for subunit stability and negative cooperativity.
Date: July 8, 2011
Creator: Slavens, Kerri D.; Brown, Teresa R.; Barakat, Khaldoon A.; Cundari, Thomas R., 1964- & Anderson, Mary E.
System: The UNT Digital Library
Sharing atrocity stories in hospice: A study of niceness message strategies in interdisciplinary team meetings (open access)

Sharing atrocity stories in hospice: A study of niceness message strategies in interdisciplinary team meetings

Article on sharing atrocity stories in hospice and a study of niceness message strategies in interdisciplinary team meetings.
Date: July 1, 2011
Creator: Wittenberg-Lyles, Elaine; Oliver, Debra Parker; Demiris, George & Cunningham, Cody P.
System: The UNT Digital Library
Diversity of Bacteria at Healthy Human Conjunctiva (open access)

Diversity of Bacteria at Healthy Human Conjunctiva

Article on the diversity of bacteria at healthy human conjunctiva.
Date: July 2011
Creator: Dong, Qunfeng; Brulc, Jennifer M.; Iovieno, Alfonso; Bates, Brandon; Garoutte, Aaron; Miller, Darlene et al.
System: The UNT Digital Library
Beyond platinum: synthesis, characterization, and in vitro toxicity of Cu(II)-releasing polymer nanoparticles for potential use as a drug delivery vector (open access)

Beyond platinum: synthesis, characterization, and in vitro toxicity of Cu(II)-releasing polymer nanoparticles for potential use as a drug delivery vector

Article on synthesis, characterization, and in vitro toxicity of Cu(II)-releasing polymer nanoparticles for potential use as a drug delivery vector.
Date: July 11, 2011
Creator: Harris, Alesha N.; Hinojosa, Barbara R.; Chavious, Montaleé D. & Petros, Robby A.
System: The UNT Digital Library
High efficiency multilayer blazed gratings for EUV and soft X-rays: Recent developments (open access)

High efficiency multilayer blazed gratings for EUV and soft X-rays: Recent developments

Multilayer coated blazed gratings with high groove density are the best candidates for use in high resolution EUV and soft x-ray spectroscopy. Theoretical analysis shows that such a grating can be potentially optimized for high dispersion and spectral resolution in a desired high diffraction order without significant loss of diffraction efficiency. In order to realize this potential, the grating fabrication process should provide a perfect triangular groove profile and an extremely smooth surface of the blazed facets. Here we report on recent progress achieved at the Advanced Light Source (ALS) in fabrication of high quality multilayer coated blazed gratings. The blazed gratings were fabricated using scanning beam interference lithography followed by wet anisotropic etching of silicon. A 200 nm period grating coated with a Mo/Si multilayer composed with 30 bi-layers demonstrated an absolute efficiency of 37.6percent in the 3rd diffraction order at 13.6 nm wavelength. The groove profile of the grating was thoroughly characterized with atomic force microscopy before and after the multilayer deposition. The obtained metrology data were used for simulation of the grating efficiency with the vector electromagnetic PCGrate-6.1 code. The simulations showed that smoothing of the grating profile during the multilayer deposition is the main reason for …
Date: July 26, 2011
Creator: Voronov, Dmitriy; Ahn, Minseung; Anderson, Erik; Cambie, Rossana; Chang, Chih-Hao; Goray, Leonid et al.
System: The UNT Digital Library
A model for improving microbial biofuel production using a synthetic feedback loop (open access)

A model for improving microbial biofuel production using a synthetic feedback loop

Cells use feedback to implement a diverse range of regulatory functions. Building synthetic feedback control systems may yield insight into the roles that feedback can play in regulation since it can be introduced independently of native regulation, and alternative control architectures can be compared. We propose a model for microbial biofuel production where a synthetic control system is used to increase cell viability and biofuel yields. Although microbes can be engineered to produce biofuels, the fuels are often toxic to cell growth, creating a negative feedback loop that limits biofuel production. These toxic effects may be mitigated by expressing efflux pumps that export biofuel from the cell. We developed a model for cell growth and biofuel production and used it to compare several genetic control strategies for their ability to improve biofuel yields. We show that controlling efflux pump expression directly with a biofuel-responsive promoter is a straight forward way of improving biofuel production. In addition, a feed forward loop controller is shown to be versatile at dealing with uncertainty in biofuel production rates.
Date: July 14, 2011
Creator: Dunlop, Mary; Keasling, Jay & Mukhopadhyay, Aindrila
System: The UNT Digital Library
Definitive Alkene Identification Needed for In-Vitro Studies with Ole (Olefin Synthesis) Proteins (open access)

Definitive Alkene Identification Needed for In-Vitro Studies with Ole (Olefin Synthesis) Proteins

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Date: July 11, 2011
Creator: Beller, Harry; Goh, Ee-Been & Keasling, Jay
System: The UNT Digital Library
Direct probe of Mott-Hubbard to charge-transfer insulator transition and electronic structure evolution in transition-metal systems (open access)

Direct probe of Mott-Hubbard to charge-transfer insulator transition and electronic structure evolution in transition-metal systems

We report the most direct experimental verification of Mott-Hubbard and charge-transfer insulators through x-ray emission spectroscopy in transition-metal (TM) fluorides. The p-d hybridization features in the spectra allow a straightforward energy alignment of the anion-2p and metal-3d valence states, which visually shows the difference between the two types of insulators. Furthermore, in parallel with the theoretical Zaanen-Sawatzky-Allen diagram, a complete experimental systematics of the 3d Coulomb interaction and the 2p-3d charge-transfer energy is reported and could serve as a universal experimental trend for other TM systems including oxides.
Date: July 11, 2011
Creator: Olalde-Velasco, P.; Jimenez-Mier, J.; Denlinger, J. D.; Hussain, Z. & Yang, W. L.
System: The UNT Digital Library
Qualification of the Second Batch Production 9-Cell Cavities Manufactured by AES and Validation of the First US Industrial Cavity Vendor for ILC (open access)

Qualification of the Second Batch Production 9-Cell Cavities Manufactured by AES and Validation of the First US Industrial Cavity Vendor for ILC

One of the major goals of ILC SRF cavity R&D is to develop industrial capabilities of cavity manufacture and processing in all three regions. In the past several years, Jefferson Lab, in collaboration with Fermi National Accelerator Laboratory, has processed and tested all the 9-cell cavities of the first batch (4 cavities) and second batch (6 cavities) production cavities manufactured by Advanced Energy Systems Inc. (AES). Over the course, close information feedback was maintained, resulting in changes in fabrication and processing procedures. A light buffered chemical polishing was introduced, removing the weld splatters that could not be effectively removed by heavy EP alone. An 800 Celsius 2 hour vacuum furnace heat treatment procedure replaced the original 600 Celsius 10 hour procedure. Four out of the six 9-cell cavities of the second production bath achieved a gradient of 36-41 MV/m at a Q0 of more than 8E9 at 35 MV/m. This result validated AES as the first ''ILC certified'' industrial vendor in the US for ILC cavity manufacture.
Date: July 1, 2011
Creator: Geng, R. L.; Golden, B. A.; Kushnick, P.; Overton, R. B.; Calderaro, M.; Peterson, E. et al.
System: The UNT Digital Library
Soft ionization of thermally evaporated hypergolic ionic liquid aerosols (open access)

Soft ionization of thermally evaporated hypergolic ionic liquid aerosols

Isolated ion pairs of a conventional ionic liquid, 1-Ethyl-3-Methyl-Imidazolium Bis(trifluoromethylsulfonyl)imide ([Emim+][Tf2N?]), and a reactive hypergolic ionic liquid, 1-Butyl-3-Methyl-Imidazolium Dicyanamide ([Bmim+][Dca?]), are generated by vaporizing ionic liquid submicron aerosol particles for the first time; the vaporized species are investigated by dissociative ionization with tunable vacuum ultraviolet (VUV) light, exhibiting clear intact cations, Emim+ and Bmim+, presumably originating from intact ion pairs. Mass spectra of ion pair vapor from an effusive source of the hypergolic ionic liquid show substantial reactive decomposition due to the internal energy of the molecules emanating from the source. Photoionization efficiency curves in the near threshold ionization region of isolated ion pairs of [Emim+][Tf2N?]ionic liquid vapor are compared for an aerosol source and an effusive source, revealing changes in the appearance energy due to the amount of internal energy in the ion pairs. The aerosol source has a shift to higher threshold energy (~;;0.3 eV), attributed to reduced internal energy of the isolated ion pairs. The method of ionic liquid submicron aerosol particle vaporization, for reactive ionic liquids such as hypergolic species, is a convenient, thermally ?cooler? source of isolated intact ion pairs in the gas phase compared to effusive sources.
Date: July 19, 2011
Creator: Koh, Christine J.; Liu, Chen-Lin; Harmon, Christopher W.; Strasser, Daniel; Golan, Amir; Kostko, Oleg et al.
System: The UNT Digital Library
Preparation and Testing of the SRF Cavities for the CEBAF 12 GeV Upgrade (open access)

Preparation and Testing of the SRF Cavities for the CEBAF 12 GeV Upgrade

Eighty new 7-cell, low-loss cell-shaped cavities are required for the CEBAF 12 GeV Upgrade project. In addition to ten pre-production units fabricated at JLab, the full set of commercially-produced cavities have been delivered. An efficient processing routine, which includes a controlled 30 micron electropolish, has been established to transform these cavities into qualified 8-cavity strings. This work began in 2010 and will run through the end of 2011. The realized cavity performance consistently exceeds project requirements and also the maximum useful gradient in CEBAF: 25 MV/m. We will describe the cavity processing and preparation protocols and summarize test results obtained to date.
Date: July 1, 2011
Creator: Reilly, A. V.; Bass, T.; Burrill, A.; Davis, G. K.; Marhauser, F.; Reece, C. E. et al.
System: The UNT Digital Library
Ideal MHD Stability of ITER Steady State Scenarios with ITBs (open access)

Ideal MHD Stability of ITER Steady State Scenarios with ITBs

One of ITER goals is to demonstrate feasibility of continuous operations using non-inductive current drive. Two main candidates have been identified for advanced operations: the long duration, high neutron fluency hybrid scenario and the steady state scenario, both operating at a plasma current lower than the reference ELMy scenario [1][2] to minimize the required current drive. The steady state scenario targets plasmas with current 7-10 MA in the flat-top, 50% of which will be provided by the self-generated, pressure-driven bootstrap current. It has been estimated that, in order to obtain a fusion gain Q > 5 at a current of 9 MA, it should be ΒN > 2.5 and H > 1.5 [3]. This implies the presence of an Internal Transport Barrier (ITB). This work discusses how the stability of steady state scenarios with ITBs is affected by the external heating sources and by perturbations of the equilibrium profiles.
Date: July 27, 2011
Creator: Poli, F. M.; Kessel, C. E.; Jardin, S.; Manickam, J.; Chance, M. & Chen, J.
System: The UNT Digital Library
MicrobesOnline: an integrated portal for comparative and functional genomics (open access)

MicrobesOnline: an integrated portal for comparative and functional genomics

Since 2003, MicrobesOnline (http://www.microbesonline.org) has been providing a community resource for comparative and functional genome analysis. The portal includes over 1000 complete genomes of bacteria, archaea and fungi and thousands of expression microarrays from diverse organisms ranging from model organisms such as Escherichia coli and Saccharomyces cerevisiae to environmental microbes such as Desulfovibrio vulgaris and Shewanella oneidensis. To assist in annotating genes and in reconstructing their evolutionary history, MicrobesOnline includes a comparative genome browser based on phylogenetic trees for every gene family as well as a species tree. To identify co-regulated genes, MicrobesOnline can search for genes based on their expression profile, and provides tools for identifying regulatory motifs and seeing if they are conserved. MicrobesOnline also includes fast phylogenetic profile searches, comparative views of metabolic pathways, operon predictions, a workbench for sequence analysis and integration with RegTransBase and other microbial genome resources. The next update of MicrobesOnline will contain significant new functionality, including comparative analysis of metagenomic sequence data. Programmatic access to the database, along with source code and documentation, is available at http://microbesonline.org/programmers.html.
Date: July 14, 2011
Creator: Dehal, Paramvir; Joachimiak, Marcin; Price, Morgan; Bates, John; Baumohl, Jason; Chivian, Dylan et al.
System: The UNT Digital Library
Colliding Laser Pulses for Laser-Plasma Accelerator Injection Control (open access)

Colliding Laser Pulses for Laser-Plasma Accelerator Injection Control

Decoupling injection from acceleration is a key challenge to achieve compact, reliable, tunable laser-plasma accelerators (LPA). In colliding pulse injection the beat between multiple laser pulses can be used to control energy, energy spread, and emittance of the electron beam by injecting electrons in momentum and phase into the accelerating phase of the wake trailing the driver laser pulse. At LBNL, using automated control of spatiotemporal overlap of laser pulses, two-pulse experiments showed stable operation and reproducibility over hours of operation. Arrival time of the colliding beam was scanned, and the measured timing window and density of optimal operation agree with simulations. The accelerator length was mapped by scanning the collision point.
Date: July 19, 2011
Creator: Plateau, Guillaume; Geddes, Cameron; Matlis, Nicholas; Cormier-Michel, Estelle; Mittelberger, Daniel; Nakamura, Kei et al.
System: The UNT Digital Library
Gradient Improvement by Removal of Identified Local Defects (open access)

Gradient Improvement by Removal of Identified Local Defects

Recent experience of ILC cavity processing and testing at Jefferson Lab has shown that some 9-cell cavities are quench limited at a gradient in the range of 15-25 MV/m. Further studies reveal that these quench limits are often correlated with sub-mm sized and highly localized geometrical defects at or near the equator weld. There are increasing evidence to show that these genetic defects have their origin in the material or in the electron beam welding process (for example due to weld irregularities or splatters on the RF surface and welding porosity underneath the surface). A local defect removal method has been proposed at Jefferson Lab by locally re-melting the niobium material. Several 1-cell cavities with known local defects have been treated by using the JLab local e-beam re-melting method, resulting in gradient and Q0 improvement. We also sent 9-cell cavities with known gradient limiting local defects to KEK for local grinding and to FNAL for global mechanical polishing. We report on the results of gradient improvements by removal of local defects in these cavities.
Date: July 2011
Creator: Geng, R. L.; Clemens, W. A.; Cooper, C. A.; Hayano, H. & Watanabe, K.
System: The UNT Digital Library
Mechanical Study of Superconducting Parallel-Bar Deflecting/Crabbing Cavities (open access)

Mechanical Study of Superconducting Parallel-Bar Deflecting/Crabbing Cavities

The superconducting parallel-bar deflecting/crabbing cavities have improved properties compared to conventional cavity structures. It is currently being considered for number of applications. The mechanical design analysis is performed on two designs of the 499 MHz parallel-bar deflecting cavity for the Jefferson Lab 12 GeV upgrade. The main purpose of the mechanical study is to examine the structural stability of the cavities under the operating conditions in the accelerators. The study results will suggest the need for additional structural strengthening. Also the study results will help to develop a concept of the tuning method. If the cavity is to be installed in the accelerator it should satisfy a certain design parameters due to the safety requirements (for example, pressure system requirements) which are much severe condition than the actual operating condition.
Date: July 1, 2011
Creator: H. Park, J.R. Delayen, S.U. De Silva
System: The UNT Digital Library