The 132-D-2 site (117-D Filter Building) and associated below-grade ductwork were decommissioned and demolished in two phases in 1985 and 1986, with a portion of the rubble left in situ beneath clean fill at least 1 m (3.3 ft) thick. Decommissioning included removal of contaminated equipment, including filters. Residual concentrations support future land uses that can be represented by a rural-residential scenario and pose no threat to groundwater or the Columbia River based on RESRAD modeling.

Decommissioning and demolition of the 132-D-3 site, 1608-D Effluent Pumping Station was performed in 1986. Decommissioning included removal of equipment, water, and sludge for disposal as radioactive waste. The at- and below-grade structure was demolished to at least 1 m below grade and the resulting rubble buried in situ. The area was backfilled to grade with at least 1 m of clean fill and contoured to the surrounding terrain. Residual concentrations support future land uses that can be represented by a rural-residential scenario and pose no threat to groundwater or the Columbia River based on RESRAD modeling.

The amounts of CO2 that would need to be injected intogeologic storage reservoirs to achieve a significant reduction ofatmospheric emissions are very large. A 1000 MWe coal-fired power plantemits approximately 30,000 tonnes of CO2 per day, 10 Mt per year(Hitchon, 1996). When injected underground over a typical lifetime of 30years of such a plant, the CO2 plume may occupy a large area of order 100km2 or more, and fluid pressure increase in excess of 1 bar(corresponding to 10 m water head) may extend over an area of more than2,500 km2 (Pruess, et al., 2003). The large areal extent expected for CO2plumes makes it likely that caprock imperfections will be encountered,such as fault zones or fractures, which may allow some CO2 to escape fromthe primary storage reservoir. Under most subsurface conditions oftemperature and pressure, CO2 is buoyant relative to groundwaters. If(sub-)vertical pathways are available, CO2 will tend to flow upward and,depending on geologic conditions, may eventually reach potablegroundwater aquifers or even the land surface. Leakage of CO2 could alsooccur along wellbores, including pre-existing and improperly abandonedwells, or wells drilled in connection with the CO2 storage operations.The pressure increases accompanying CO2 injection will give rise tochanges in effective stress that could cause …

Chloroplast genome structure, gene order and content arehighly conserved in land plants. We sequenced the complete chloroplastgenome sequence of Trachelium caeruleum (Campanulaceae) a member of anangiosperm family known for highly rearranged chloroplast genomes. Thetotal genome size is 162,321 bp with an IR of 27,273 bp, LSC of 100,113bp and SSC of 7,661 bp. The genome encodes 115 unique genes, with 19duplicated in the IR, a tRNA (trnI-CAU) duplicated once in the LSC and aprotein coding gene (psbJ) duplicated twice, for a total of 137 genes.Four genes (ycf15, rpl23, infA and accD) are truncated and likelynonfunctional; three others (clpP, ycf1 and ycf2) are so highly divergedthat they may now be pseudogenes. The most conspicuous feature of theTrachelium genome is the presence of eighteen internally unrearrangedblocks of genes that have been inverted or relocated within the genome,relative to the typical gene order of most angiosperm chloroplastgenomes. Recombination between repeats or tRNAs has been suggested as twomeans of chloroplast genome rearrangements. We compared the relativenumber of repeats in Trachelium to eight other angiosperm chloroplastgenomes, and evaluated the location of repeats and tRNAs in relation torearrangements. Trachelium has the highest number and largest repeats,which are concentrated near inversion endpoints or other rearrangements.tRNAs occur at …

We present the results of ab initio calculations for elasticelectron scattering by tetrahydrofuran (THF) using the complex Kohnvariational method. We carried out fixed-nuclei calculations at theequilibrium geometry of the target molecule for incident electronenergies up to 20 eV. The calculated momentum transfer cross sectionsclearly reveal the presence of broad shape resonance behavior in the 8-10eV energy range, in agreement with recent experiments. The calculateddifferential cross sections at 20 eV, which include the effects of thelong-range electron-dipole interaction, are alsofound to be in agreementwith the most recent experimental findings.

Multilayer coatings for the 7 EUV channels of the AIA have been developed and completed successfully on all AIA flight mirrors. Mo/Si coatings (131, 171, 193.5, 211 {angstrom}) were deposited at Lawrence Livermore National Laboratory (LLNL). Mg/SiC (304, 335 {angstrom}) and Mo/Y (94 {angstrom}) coatings were deposited at Columbia University. EUV reflectance of the 131/335 {angstrom}, 171 {angstrom}, 193.5/211 {angstrom} primary and secondary flight mirrors and the 94/304 {angstrom} secondary flight mirror was measured at beamline 6.3.2. of the Advanced Light Source (ALS) at LBNL. EUV reflectance of the 94/304 {angstrom} primary and secondary flight mirrors was measured at beamline X24C of the National Synchrotron Light Source (NSLS) at Brookhaven National Lab. Preliminary EUV reflectance measurements of the 94, 304 and 335 {angstrom} coatings were performed with a laser plasma source reflectometer located at Columbia University. Prior to multilayer coating, Atomic Force Microscopy (AFM) characterization and cleaning of all flight substrates was performed at LLNL.

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This report documents the results of the weld development and abbreviated weld qualification efforts performed by Pacific Northwest National Laboratory (PNNL) for refractory metal and superalloy biaxial creep specimens. Biaxial creep specimens were to be assembled, electron beam welded, laser-seal welded, and pressurized at PNNL for both in-pile (JOYO reactor, O-arai, Japan) and out-of-pile creep testing. The objective of this test campaign was to evaluate the creep behavior of primary cladding and structural alloys under consideration for the Prometheus space reactor. PNNL successfully developed electron beam weld parameters for six of these materials prior to the termination of the Naval Reactors program effort to deliver a space reactor for Project Prometheus. These materials were FS-85, ASTAR-811C, T-111, Alloy 617, Haynes 230, and Nirnonic PE16. Early termination of the NR space program precluded the development of laser welding parameters for post-pressurization seal weldments.

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Mitochondria and plastids (collectively called organelles)descended from prokaryotes that adopted an intracellular, endosymbioticlifestyle within early eukaryotes. Comparisons of their remnant genomesaddress a wide variety of biological questions, especially when includingthe genomes of their prokaryotic relatives and the many genes transferredto the eukaryotic nucleus during the transitions from endosymbiont toorganelle. The pace of producing complete organellar genome sequences nowmakes it unfeasible to do broad comparisons using the primary literatureand, even if it were feasible, it is now becoming uncommon for journalsto accept detailed descriptions of genome-level features. Unfortunatelyno database is currently useful for this task, since they have littlestandardization and are riddled with error. Here I outline what iscurrently wrong and what must be done to make this data useful to thescientific community.

The point spread function (PSF) is an important measure of spatial resolution in CCDs for point-like objects, since it affects image quality and spectroscopic resolution. We present new data and theoretical developments for lateral charge diffusion in thick, fully-depleted charge-coupled devices (CCDs) developed at Lawrence Berkeley National Laboratory (LBNL). Because they can be over-depleted, the LBNL devices have no field-free region and diffusion is controlled through the application of an external bias voltage. We give results for a 3512 x 3512 format, 10.5 {micro}m pixel back-illuminated p-channel CCD developed for the SuperNova/Acceleration Probe (SNAP), a proposed satellite-based experiment designed to study dark energy. The PSF was measured at substrate bias voltages between 3 V and 115 V. At a bias voltage of 115 V, we measure an rms diffusion of 3.7 {+-} 0.2 {micro}m. Lateral charge diffusion in LBNL CCDs will meet the SNAP requirements.

Cathepsin B (CTSB) and cathepsin L (CTSL) are two widelyexpressed cysteine proteases thought to predominantly reside withinlysosomes. Functional analysis of CTSL in humans is complicated by theexistence of two CTSL-like homologues (CTSL and CTSL2), in contrast tomice which contain only one CTSL enzyme. Thus transgenic expression ofhuman CTSL in CTSL deficient mice provides an opportunity to study the invivo functions of this human protease without interference by its highlyrelated homologue. While mice with single gene deficiencies for murineCTSB or CTSL survive without apparent neuromuscular impairment, murineCTSB/CTSL double deficient mice display degeneration of cerebellarPurkinje cells and neurons of the cerebral cortex, resulting in severehypotrophy, motility defects, and lethality during their third to fourthweek of life. Here we show that expression of human CTSL through agenomic transgene results in widespread expression of human CTSL in themouse which is capable of rescuing the lethality found in CTSB/CTSLdouble-deficient animals. Human CTSL is expressed in the brain of thesecompound mutants predominantly in neurons of the cerebral cortex and inPurkinje cells of the cerebellum, where it appears to prevent neuronalcell death.

A micromechanical model is developed for grain bridging inmonolithic ceramics. Specifically, bridge formation of a single,non-equiaxed grain spanning adjacent grains is addressed. A cohesive zoneframework enables crack initiation and propagation along grainboundaries. The evolution of the bridge is investigated through avariance in both grain angle and aspect ratio. We propose that thebridging process can be partitioned into five distinct regimes ofresistance: propagate, kink, arrest, stall, and bridge. Although crackpropagation and kinking are well understood, crack arrest and subsequent"stall" have been largely overlooked. Resistance during the stall regimeexposes large volumes of microstructure to stresses well in excess of thegrain boundary strength. Bridging can occur through continued propagationor reinitiation ahead of the stalled crack tip. The driving forcerequired to reinitiate is substantially greater than the driving forcerequired to kink. In addition, the critical driving force to reinitiateis sensitive to grain aspect ratio but relatively insensitive to grainangle. The marked increase in crack resistance occurs prior to bridgeformation and provides an interpretation for the rapidly risingresistance curves which govern the strength of many brittle materials atrealistically small flaw sizes.

Atomic scale surface structure plays an important roleindescribing many properties of materials, especially in the case ofnanomaterials. One of the most effective techniques for surface structuredetermination is low-energy electron diffraction (LEED), which can beused in conjunction with optimization to fit simulated LEED intensitiesto experimental data. This optimization problem has a number ofcharacteristics that make it challenging: it has many local minima, theoptimization variables can be either continuous or categorical, theobjective function can be discontinuous, there are no exact analyticderivatives (and no derivatives at all for categorical variables), andfunction evaluations are expensive. In this study, we show how to apply aparticular class of optimization methods known as pattern search methodsto address these challenges. These methods donot explicitly usederivatives, and are particularly appropriate when categorical variablesare present, an important feature that has not been addressed in previousLEED studies. We have found that pattern search methods can produceexcellent results, compared to previously used methods, both in terms ofperformance and locating optimal results.

In the first part of the talk, I explain what empirical evidence points to the need for having an effective grand unification-like symmetry possessing the symmetry SU(4)-color in 4D. If one assumes the premises of a future predictive theory including gravity--be it string/M theory or a reincarnation--this evidence then suggests that such a theory should lead to an effective grand unification-like symmetry as above in 4D, near the string-GUT-scale, rather than the standard model symmetry. Advantages of an effective supersymmetric G(224) = SU(2){sub L} x SU(2){sub R} x SU(4){sup c} or SO(10) symmetry in 4D in explaining (1) observed neutrino oscillations, (2) baryogenesis via leptogenesis, and (3) certain fermion mass-relations are noted. And certain distinguishing tests of a SUSY G(224) or SO(10)-framework involving CP and flavor violations (as in {mu} {yields} e{gamma}, {tau} {yields} {mu}{gamma}, edm's of the neutron and the electron) as well as proton decay are briefly mentioned. Recalling some of the successes we have had in our understanding of nature so far, and the current difficulties of string/M theory as regards the large multiplicity of string vacua, some comments are made on the traditional goal of understanding vis a vis the recently evolved view of landscape and …

A combination of cyclic polarization tests, electrochemical impedance spectroscopy, and electrochemical quartz crystal microbalance (EQCM) measurements indicate a film is formed when aluminum is polarized above 4.5V in 1:1 EC+DMC with 1M LiBOB. The quantity of film that is formed increases with increasing applied potential. Results of EQCM tests suggest the film is AlBO{sub 3}. The film is very protective against corrosion and inhibits pitting corrosion of aluminum in normally corrosive 1M LiTFSI.

The Coupled Atmosphere/Ocean Mesoscale Prediction System (COAMPS) model (Hodur, 1997) was developed at the Naval Research Laboratory. COAMPS has been used at resolutions as small as 2 km to study the role of complex topography in generating mesoscale circulation (Doyle, 1997). The model has been adapted for use in the Atmospheric Science Division at LLNL for both research and operational use. The model is a fully, non-hydrostatic model with several options for turbulence parameterization, cloud processes and radiative transfer. We have recently modified the COAMPS code to include building and other urban surfaces effects in the mesoscale model by incorporating an urban canopy parameterization (UCP) (Chin et al., 2005). This UCP is a modification of the original parameterization of (Brown and Williams, 1998), based on Yamada's (1982) forest canopy parameterization and includes modification of the TKE and mean momentum equations, modification of radiative transfer, and an anthropogenic heat source. COAMPS is parallelized for both shared memory (OpenMP) and distributed memory (MPI) architecture.

The bonding of hexanethiols to gold nanoparticles of 1.5, 2.0 and 3 nm was studied using X-ray Absorption Near Edge Spectroscopy (XANES) and Extended X-ray Absorption Fine Structure (EXAFS). The XANES spectra revealed that a substantial fraction of hexanethiol molecules were weakly bound, in addition to the molecules forming covalent bonds with Au surface atoms. The weakly bound molecules could be easily removed by washing in dichloromethane. After removal of the weakly bound molecules the S K-edge XANES spectrum reveals peaks due to S-Au and S-C bonds with intensities that change as a function of particle size. We explain this as the result of distortions occurring in the molecules adsorbed on the smaller particles. The distortions arise from the poor packing due to the high curvature of the particles. In addition, EXAFS results show that the smaller particles bind more molecules per Au atom than the larger ones, which is again interpreted as a result of the curved nature of the surface.

There are divergent results in the literature on the(in)dependence of the ion velocity distribution functions on the ioncharge states. Apparently, most time-of-flight methods of measurementsindicate independence whereas most measurements with electrostaticanalyzers state the opposite. It is shown here that this grouping iscoincidental with investigations of pulsed and continuous arcs. Allresults can be consolidated by taking ion-neutral interaction intoaccount, especially charge exchange collisions with the metal neutralsproduced by the arc itself. The velocity distribution functions areindependent of charge state when produced at cathode spots but becomecharge-state dependent when the plasma interacts withneutrals.

This cleanup verification package documents completion of remedial action for the 600-259 waste site. The site was the former site of the Special Waste Form Lysimeter, consisting of commercial reactor isotope waste forms in contact with soils within engineered caissons, and was used by Pacific Northwest National Laboratory to collect data regarding leaching behavior for target analytes. A Grout Waste Test Facility also operated at the site, designed to test leaching rates of grout-solidified low-level radioactive waste.

Self-organized one- and two-dimensional arrays of nanoscale surface features ("ripples" and "dots") sometimes form spontaneously on initially flat surfaces eroded by a directed ion beam in a process called "sputter patterning". Experiments on this sputter patterning process with focused and unfocused ion beams, combined with theoretical advances, have been responsible for a number of scientific advances. Particularly noteworthy are (i) the discovery of propagative, rather than dissipative, behavior under some ion erosion conditions, permitting a pattern to be fabricated at a large length scale and propagated over large distances while maintaining, or even sharpening, the sharpest features; (ii) the first demonstration of guided self-organization of sputter patterns, along with the observation that defect density is minimized when the spacing between boundaries is near an integer times the natural spatial period; and (iii) the discovery of metastability of smooth surfaces, which contradicts the nearly universally accepted linear stability theory that predicts that any surface is linearly unstable to sinusoidal perturbations of some wave vector.

Radioactive supernate, salt, and/or sludge wastes (i.e., high level wastes) are confined in 49 underground storage tanks at the Savannah River Site (SRS). The waste is transported between tanks within and between the F and H area tank farms and other facilities on site via underground and a limited number of aboveground transfer lines. The Department of Energy - Savannah River Operations Office (DOE-SR) performed a comprehensive assessment of the structural integrity program for the Tank Farm waste transfer system at the SRS. This document addresses the following issues raised during the DOE assessment: (1) Inspections of failed or replaced transfer lines indicated that the wall thickness of some core and jacket piping is less than nominal; (2) No corrosion allowance is utilized in the transfer line structural qualification calculations. No basis for neglecting corrosion was provided in the calculations; (3) Wall loss due to erosion is not addressed in the transfer line structural qualification calculations; and (4) No basis is provided for neglecting intergranular stress corrosion cracking in the transfer line structural qualification calculations. The common theme in most of these issues is the need to assess the potential for occurrence of material degradation of the transfer line piping. …

To address the DOE need for the storage and handling of terabyte of nuclear physics data, Physical Optics Corporation (POC) developed a new multi-terabit, 90° recording geometry 3D holographic archival optical memory storage and search system. In contrast to state-of-the-art memory approaches, 3DHAM handles the data through highly parallel optical processing in conjunction with highly redundant hologram multiplexing. The 3DHAM system advantages also stem from its unique 3D volume-recording medium, which theoretically has a significantly greater data density than diskbased systems.

High throughput genome sequencing centers that were originally built for the Human Genome Project (Lander et al., 2001; Venter et al., 2001) have now become an engine for comparative genomics. The six largest centers alone are now producing over 150 billion nucleotides per year, more than 50 times the amount of DNA in the human genome, and nearly all of this is directed at projects that promise great insights into the pattern and processes of evolution. Unfortunately, this data is being produced at a pace far exceeding the capacity of the scientific community to provide insightful analysis, and few scientists with training and experience in evolutionary biology have played prominent roles to date. One of the consequences is that poor quality analyses are typical; for example, orthology among genes is generally determined by simple measures of sequence similarity, when this has been discredited by molecular evolutionary biologists decades ago. Here we discuss the how genomes are chosen for sequencing and how the scientific community can have input. We describe the PhIGs database and web tools (Dehal and Boore 2005a; http://PhIGs.org), which provide phylogenetic analysis of all gene families for all completely sequenced genomes and the associated 'Synteny Viewer', which allows …