The purpose of this report is to document the status of revegetation projects and natural resources mitigation efforts that have been conducted for remediated waste sites and other activities associated with the Comprehensive Environmental Response, Compensation, and Liability Act cleanup of National Priorities List waste sites at Hanford. One of the objectives of restoration is the revegetation of remediated waste sites to stabilize the soil and restore the land to native vegetation. The report documents the results of revegetation and mitigation monitoring conducted in 2006 and includes 11 revegetation/restoration projects, one revegetation/mitigation project, and 2 bat habitat mitigation projects.

High pressure common rail (HPCR) fuel injection performance testing developed a notch-by-notch performance comparison between HPCR and the production fuel system. A multiple injection screening study at notch 8 was completed with the baseline HPCR fuel injector nozzle tip design. Began a study on performance effects of different nozzle tip geometries. The hybrid locomotive battery vendor performed component fabrication tests and began manufacture of a mockup battery to validate the vibration design performance.

This project produced algorithms for and software implementations of adaptive mesh refinement (AMR) methods for solving practical solid and thermal mechanics problems on multiprocessor parallel computers using unstructured finite element meshes. The overall goal is to provide computational solutions that are accurate to some prescribed tolerance, and adaptivity is the correct path toward this goal. These new tools will enable analysts to conduct more reliable simulations at reduced cost, both in terms of analyst and computer time. Previous academic research in the field of adaptive mesh refinement has produced a voluminous literature focused on error estimators and demonstration problems; relatively little progress has been made on producing efficient implementations suitable for large-scale problem solving on state-of-the-art computer systems. Research issues that were considered include: effective error estimators for nonlinear structural mechanics; local meshing at irregular geometric boundaries; and constructing efficient software for parallel computing environments.

A review is presented of recent advances in optical imaging and spectroscopy and the use of light for addressing breast cancer issues. Spectroscopic techniques offer the means to characterize tissue components and obtain functional information in real time. Three-dimensional optical imaging of the breast using various illumination and signal collection schemes in combination with image reconstruction algorithms may provide a new tool for cancer detection and monitoring of treatment.

The work presented in this report consists of a compilation of individual activity reports sent to BSC at the conclusion of the FY04 fiscal year. A chapter is dedicated for each individual activity, and describes the accomplishments at the time of writing the original reports, and includes experimental data when appropriate. It is important to note that since work for most of the activities was intended for completion in FY05, no DTN numbers are given in the present report and the results presented here are to be considered preliminary at the time of their writing. Information and results presented in the FY05 Summary Report (UCRL-TR-217339) are more comprehensive and complete and supersede those given in the present report. The five activities addressed in this report are: (1) Preliminary evaluation of burnished and peened samples-metallurgy; (2) Preliminary heat-to-heat variability study-metallurgical; (3) Evaluation of FY00 mockup samples-metallurgy; (4) Weld stability with thick prototypical welds; and (5) Effect of solution annealing onweld metallurgy.

This report describes the progress made during the Early Career Principal Investigator (ECPI) project on Algorithmic Techniques for Large Data Sets. Research was carried out in the areas of dimension reduction, clustering and finding structure in data, aggregating information from different sources and designing efficient methods for similarity search for high dimensional data. A total of nine different research results were obtained and published in leading conferences and journals.

Characterizing percolation patterns in unsaturated fractured rock has posed a greater challenge to modeling investigations than comparable saturated zone studies, because of the heterogeneous nature of unsaturated media and the great number of variables impacting unsaturated flow. This paper presents an integrated modeling methodology for quantitatively characterizing percolation patterns in the unsaturated zone of Yucca Mountain, Nevada, a proposed underground repository site for storing high-level radioactive waste. The modeling approach integrates a wide variety of moisture, pneumatic, thermal, and isotopic geochemical field data into a comprehensive three-dimensional numerical model for modeling analyses. It takes into account the coupled processes of fluid and heat flow and chemical isotopic transport in Yucca Mountain's highly heterogeneous, unsaturated fractured tuffs. Modeling results are examined against different types of field-measured data and then used to evaluate different hydrogeological conceptualizations and their results of flow patterns in the unsaturated zone. In particular, this model provides a much clearer understanding of percolation patterns and flow behavior through the unsaturated zone, both crucial issues in assessing repository performance. The integrated approach for quantifying Yucca Mountain's flow system is demonstrated to provide a practical modeling tool for characterizing flow and transport processes in complex subsurface systems.

The Office of Space and Defense Power Systems of the Department of Energy (DOE) provides Radioisotope Power Systems (RPS) for applications where conventional power systems are not feasible. For example, radioisotope thermoelectric generators were supplied by the DOE to the National Aeronautics and Space Administration for deep space missions including the Cassini Mission launched in October of 1997 to study the planet Saturn. For the Cassini Mission, ORNL produced carbon-bonded carbon fiber (CBCF) insulator sets, iridium alloy blanks and foil, and clad vent sets (CVS) used in the generators. The Oak Ridge National Laboratory (ORNL) has been involved in developing materials and technology and producing components for the DOE for more than three decades. This report reflects program guidance from the Office of Space and Defense Power Systems for fiscal year (FY) 2005. Production activities for prime quality (prime) CBCF insulator sets, iridium alloy blanks and foil, and CVS are summarized in this report. Technology activities are also reported that were conducted to improve the manufacturing processes, characterize materials, or to develop information for new radioisotope power systems.

This report describes how to acquire localized Corrosion kinetic maps for a series of NiCrMo alloys.

Efforts during this second year focused on four areas: (1) continued searching and summarizing of published Fischer-Tropsch synthesis (FTS) mechanistic and kinetic studies of FTS reactions on iron catalysts; (2) investigation of CO adsorption/desorption and temperature programmed hydrogenation (TPH) of carbonaceous species after FTS on unsupported iron and alumina-supported iron catalysts; (3) activity tests of alumina-supported iron catalysts in a fixed bed reactor; (4) sequential design of experiments, for the collection of rate data in a Berty CSTR reactor, and nonlinear-regression analysis to obtain kinetic parameters. Literature sources describing mechanistic and kinetic studies of Fischer-Tropsch synthesis on iron catalysts were compiled in a review. Temperature-programmed desorption/reaction methods (the latter using mass-spectrometry detection and also thermogravimetric analyzer (TGA)) were utilized to study CO adsorption/-desorption on supported and unsupported iron catalysts. Molecular and dissociative adsorptions of CO occur on iron catalysts at 25-150 C. The amounts adsorbed and bond strengths of adsorption are influenced by supports and promoters. That CO adsorbs dissociatively on polycrystalline Fe at temperatures well below those of FT reaction indicates that CO dissociation is facile and unlikely to be the rate-limiting step during FTS. Carbonaceous species formed after FT reaction for only 5 minutes at 200 C were …

This poster, submitted for the CU Energy Initiative/NREL Symposium on October 3, 2006 held in Boulder, Colorado, discusses best practices for determining the impacts of municipal programs on energy use, air quality, and other costs and benefits.

The material in this report summarizes the Diversa technical effort in development of a biocatalyst for the biodesulfurization of Petro Star diesel as well as an economic report of standalone and combined desulfurization options, prepared by Pelorus and Anvil, to support and inform the development of a commercially viable process. We will discuss goals of the projected as originally stated and their modification as guided by parallel efforts to evaluate commercialization economics and process parameters. We describe efforts to identify novel genes and hosts for the generation of an optimal biocatalyst, analysis of diesel fuels (untreated, chemically oxidized and hydrotreated) for organosulfur compound composition and directed evolution of enzymes central to the biodesulfurization pathway to optimize properties important for their use in a biocatalyst. Finally we will summarize the challenges and issues that are central to successful development of a viable biodesulfurization process.

The goal of the Biomolecular Simulation of Base Excision Repair and Protein Signaling project is to enhance our understanding of the mechanism of human polymerase-, one of the key enzymes in base excision repair (BER) and the cell-signaling enzymes cyclic-AMP-dependent protein kinase. This work used molecular modeling and simulation studies to specifically focus on the • dynamics of DNA and damaged DNA • dynamics and energetics of base flipping in DNA • mechanism and fidelity of nucleotide insertion by BER enzyme human polymerase-β • mechanism and inhibitor design for cyclic-AMP-dependent protein kinase. Molecular dynamics simulations and electronic structure calculations have been performed using the computer resources at the Molecular Science Computing Facility at the Environmental Molecular Sciences Laboratory.

Critical experiments were conducted at the Oak Ridge Critical Experiment Facility (ORCEF) to determine the critical concentration for an unreflected 69.2-cm-diameter sphere of UO{sub 2}F{sub 2}, at an enrichment of {approx}37 percent U{sup 235}, by weight. These experiments were a continuation of previous efforts to determine critical dimensions for fissile materials in simple geometry. Some of the earlier experiments in this vessel have been published as part of the OECD handbook. The reports concerning these experiments have only recently become available. Until August 2005, Refs. 2 and 3 were still classified. These documents, along with experimental logbooks and unclassified papers available on the experimental campaign and facility are being used to generate a computer model for this critical experiment.

The FLUKA Monte Carlo particle generation and transport code was used to calculate shielding requirements for the 3 GeV, 500 mA SPEAR3 storage ring at the Stanford Synchrotron Radiation Laboratory. The photon and neutron dose equivalent source term data were simulated for a 3 GeV electron beam interacting with two typical target/shielding geometries in the ring. The targets simulated are a rectangular block of 0.7 cm thick copper and a 5 cm thick iron block, both tilted at 1{sup o} relative to the beam direction. Attenuation profiles for neutrons and photons in concrete and lead as a function of angle at different shield thicknesses were calculated. The first, second and equilibrium attenuation lengths of photons and neutrons in the shield materials are derived from the attenuation profiles. The source term data and the attenuation lengths were then used to evaluate the shielding requirements for the ratchet walls of all front-ends of the SPEAR3 storage ring.

Higher quantum efficiency in near-IR, narrower point spread function and higher readout speed than with conventional sensors have been receiving increased emphasis in the development of CCDs and silicon PIN-CMOS sensors for use in large optical telescopes. Some key aspects in the development of such devices are reviewed.

We present a survey of serendipitous extended X-ray sources and optical cluster candidates from the Chandra Multi-wavelength Project (ChaMP). Our main goal is to make an unbiased comparison of X-ray and optical cluster detection methods. In 130 archival Chandra pointings covering 13 square degrees, we use a wavelet decomposition technique to detect 55 extended sources, of which 6 are nearby single galaxies. Our X-ray cluster catalog reaches a typical flux limit of about {approx} 10{sup -14} erg s{sup -1} cm{sup -2}, with a median cluster core radius of 21''. For 56 of the 130 X-ray fields, we use the ChaMP's deep NOAO/4m MOSAIC g', r', and i' imaging to independently detect cluster candidates using a Voronoi tessellation and percolation (VTP) method. Red-sequence filtering decreases the galaxy fore/background contamination and provides photometric redshifts to z {approx} 0.7. From the overlapping 6.1 square degree X-ray/optical imaging, we find 115 optical clusters (of which 11% are in the X-ray catalog) and 28 X-ray clusters (of which 46% are in the optical VTP catalog). The median redshift of the 13 X-ray/optical clusters is 0.41, and their median X-ray luminosity (0.5-2 keV) is L{sub X} = (2.65 {+-} 0.19) x 10{sup 43} ergs s{sup -1}. …

The report describes Characteristic Electrochemical Noise During Electrochemical Determination of Hydrogen Permeation.

At the Savannah River Site (SRS) the Defense Waste Processing Facility (DWPF) has been immobilizing SRS's radioactive high-level waste (HLW) sludge into a borosilicate glass for approximately nine years. Currently the DWPF is immobilizing HLW sludge in Macrobatch 4 (MB4). Each macrobatch is nominally five hundred thousand gallons of HLW and produces nominally five hundred stainless steel canisters two feet in diameter ten feet tall filled with the borosilicate glass. This paper presents results of the characterization of a sample of MB4 glass taken directly from the pour stream of the DWPF melter during the filling of the canister S02312. This canister was the 275th canister filled during immobilizing MB4. The purpose of the sample was to confirm that the leachability of the glass in a standard ASTM test was less than the leachability criterion set forth in the Waste Acceptance Product Specifications (WAPS) for vitrified waste forms for permanent disposal in a Federal geologic repository. The sample was sent to the Savannah River National Laboratory (SRNL) for characterization.

Radionuclide and metal contaminants are present in the badose zone and groundwater throughout the U.S. Department of Energy (DOE) legacy sites.

The Plus Operator thus provides a mechanism to group modules of similar output so that the output can be combined and supplied to downstream modules. This document provides requirements, the design, data-file specifications, the test plan, and the quality assurance/quality control (QA/QC) protocol for the Plus Operator.

The Gammaproteobacterium, Nitrosococcus oceani (ATCC 19707), is a Gram-negative obligate chemolithoautotroph capable of extracting energy and reducing power from the oxidation of ammonia to nitrite. Sequencing and annotation of the genome revealed a single circular chromosome (3,481,691 bp; 50.4% G+C) and a plasmid (40,420 bp) that contain 3052 and 41 candidate protein-encoding genes, respectively. The genes encoding proteins necessary for the function of known modes of lithotrophy and autotrophy were identified. In contrast to betaproteobacterial nitrifier genomes, the N. oceani genome contained two complete rrn operons. In contrast, only one copy of the genes needed to synthesize functional ammonia monooxygenase and hydroxylamine oxidoreductase, as well as the proteins that relay the extracted electrons to a terminal electron acceptor were identified. The N. oceani genome contained genes for 13 complete two-component systems. The genome also contained all the genes needed to reconstruct complete central pathways, the tricarboxylic acid cycle and the Embden-Meyerhof-Parnass and pentose phosphate pathways. The N. oceani genome contains the genes required to store and utilize energy from glycogen inclusion bodies and sucrose. Polyphosphate and pyrophosphate appear to be integrated in this bacterium's energy metabolism, stress tolerance and the ability to assimilate carbon via gluconeogenesis. One set of genes …

This document describes concepts associated with transferring temporal and spatial boundary conditions between modules in FRAMES and how FRAMES might consider dynamic feedback.

The main objectives of the project were to monitor, characterize, and quantify in situ the rates of formation and dissociation of methane hydrates at and near the seafloor in the northern Gulf of Mexico, with a focus on the Bush Hill seafloor hydrate mound; to record the linkages between physical and chemical parameters of the deposits over the course of one year, by emphasizing the response of the hydrate mound to temperature and chemical perturbations; and to document the seafloor and water column environmental impacts of hydrate formation and dissociation. For these, monitoring the dynamics of gas hydrate formation and dissociation was required. The objectives were achieved by an integrated field and laboratory scientific study, particularly by monitoring in situ formation and dissociation of the outcropping gas hydrate mound and of the associated gas-rich sediments. In addition to monitoring with the MOSQUITOs, fluid flow rates and temperature, continuously sampling in situ pore fluids for the chemistry, and imaging the hydrate mound, pore fluids from cores, peepers and gas hydrate samples from the mound were as well sampled and analyzed for chemical and isotopic compositions. In order to determine the impact of gas hydrate dissociation and/or methane venting across the seafloor …