The human DNA-activated protein kinase, DNA-PK: Substrate specificity (open access)

The human DNA-activated protein kinase, DNA-PK: Substrate specificity

Although much has been learned about the structure and function of p53 and the probable sequence of subsequent events that lead to cell cycle arrest, little is known about how DNA damage is detected and the nature of the signal that is generated by DNA damage. Circumstantial evidence suggests that protein kinases may be involved. In vitro, human DNA-PK phosphorylates a variety of nuclear DNA-binding, regulatory proteins including the tumor suppressor protein p53, the single-stranded DNA binding protein RPA, the heat shock protein hsp90, the large tumor antigen (TAg) of simian virus 40, a variety of transcription factors including Fos, Jun, serum response factor (SRF), Myc, Sp1, Oct-1, TFIID, E2F, the estrogen receptor, and the large subunit of RNA polymerase II (reviewed in Anderson, 1993; Jackson et al., 1993). However, for most of these proteins, the sites that are phosphorylated by DNA-PK are not known. To determine if the sites that were phosphorylated in vitro also were phosphorylated in vivo and if DNA-PK recognized a preferred protein sequence, the authors identified the sites phosphorylated by DNA-PK in several substrates by direct protein sequence analysis. Each phosphorylated serine or threonine is followed immediately by glutamine in the polypeptide chain; at no …
Date: November 5, 1994
Creator: Anderson, C.W.; Connelly, M.A.; Zhang, H.; Sipley, J.A.; Lees-Miller, S.P.; Lintott, L.G. et al.
Object Type: Report
System: The UNT Digital Library
Measurements of DT and DD neutron yields by neutron activation on TFTR (open access)

Measurements of DT and DD neutron yields by neutron activation on TFTR

A variety of elemental foils have been activated by neutron fluence from TFTR under conditions with the DT neutron yield per shot ranging from 10{sup 12} to over 10{sup 18}, and with the DT/(DD+DT) neutron ratio varying from 0.5% (from triton burnup) to unity. Linear response over this large dynamic range is obtained by reducing the mass of the foils and increasing the cooling time, all while accepting greatly improved counting statistics. Effects on background gamma-ray lines from foil-capsule-material contaminants. and the resulting lower limits on activation foil mass, have been determined. DT neutron yields from dosimetry standard reactions on aluminum, chromium, iron, nickel, zirconium, and indium are in agreement within the {plus_minus}9% (one-sigma,) accuracy of the measurements: also agreeing are yields from silicon foils using the ACTL library cross-section. While the ENDF/B-V library has too low a cross-section. Preliminary results from a variety of other threshold reactions are presented. Use of the {sup 115}In(n,n) {sup 115m}In reaction (0.42 times as sensitive to DT neutrons as DD neutrons) in conjunction with pure-DT reactions allows a determination of the DT/(DD+DT) ratio in trace tritium or low-power tritium beam experiments.
Date: May 5, 1994
Creator: Barnes, C. W.; Larson, A. R.; LeMunyan, G. & Loughlin, M. J.
Object Type: Article
System: The UNT Digital Library
Geophysical investigation of 216-U-8 clay vitrified pipe transfer line, 200 West Area (open access)

Geophysical investigation of 216-U-8 clay vitrified pipe transfer line, 200 West Area

Two geophysical surveys were conducted over a vitrified clay pipeline (VCP) that was used to transfer liquid radioactive waste from the 224-U Building to the 216-U-8 and 216-U-12 cribs. The objectives of the surveys were to locate the VCP in the northern site, locate the bends in the VCP in the southern site, and locate possible utilities or pipelines at both sites. Ground-penetrating radar (GPR) was the method chosen for the surveys. Electromagnetic induction (EMI) was also used at the southern site to map the extent of a possible pipeline. It is very difficult to detect most VCPs with GPR, however, excavation boundaries for the pipeline are often discernible. The VCP was not identified in the GPR data at the northern site. Its anticipated depth was 10--12 ft. The VCP at the southern site appears to be much shallower. The data suggest it may be 5 ft or less below the surface in places. The edges of the excavation from N100 to N190 are between E120 and E135 and were quite distinct in the data. However, the excavation boundaries weren`t apparent north of N190, suggesting that the VCP bends to the north near N200. Several profiles were extended beyond N200. …
Date: December 5, 1994
Creator: Bergstrom, K. A.
Object Type: Report
System: The UNT Digital Library
Release of HWVP design media (open access)

Release of HWVP design media

Late in 1993 the Hanford Waste Vitrification Plant (HWVP) Project was given direction by the US Department of Energy (DOE), Richland Operations Office (RL) to defer design activities on the project. As a result of this direction, detailed design work on most structures was stopped and the design information was stored. Design and construction work was carried to completion on a few of the HWVP packages. The packages that were carried to completion are the subject of this work plan.
Date: October 5, 1994
Creator: Bevins, R. R.
Object Type: Report
System: The UNT Digital Library
Project management plan for Project 93L-EWW-087, {open_quotes}222-S radioactive liquid waste line replacement{close_quotes} (open access)

Project management plan for Project 93L-EWW-087, {open_quotes}222-S radioactive liquid waste line replacement{close_quotes}

Direct revision, to rev. 1, of the Project Management Plan for Project 93L-EWW-087, {open_quotes}222-S Radioactive Liquid Waste Line Replacement.{close_quotes}
Date: December 5, 1994
Creator: Beyer, J. J.
Object Type: Report
System: The UNT Digital Library
Preparation of germanium doped plasma polymerized coatings as ICF target ablators (open access)

Preparation of germanium doped plasma polymerized coatings as ICF target ablators

Targets for Inertial Confinement Fusion (ICF) experiments at the Lawrence Livermore National Laboratory (LLNL) utilize an organic (CH) ablator coating prepared by plasma polymerization. Some of these experiments require a mid-Z dopant in the ablator coating to modify the opacity of the shell. Bromine had been used in the past, but the surface finish of brominated CH degrades rapidly with time upon exposure to air. This paper describes the preparation and characterization of plasma polymer layers containing germanium as a dopant at concentrations of between 1.25 and 2.25 atom percent. The coatings are stable in air and have an rms surface roughness of 7--9 nm (modes 10--1,000) which is similar to that obtained with undoped coatings. High levels of dopant result in cracking of the inner mandrel during target assembly. Possible explanations for the observed cracking behavior will be discussed.
Date: October 5, 1994
Creator: Brusasco, R. M.; Saculla, M. D. & Cook, R. C.
Object Type: Report
System: The UNT Digital Library
S Tank Farm SL-119 saltwell piping failure analysis report (open access)

S Tank Farm SL-119 saltwell piping failure analysis report

On January 24, 1992, while pressure testing saltwell line SL-119 in the 241-S Tank Farm, water was observed spraying out of heat trace enclosure. The SL-115, SL-116, SN-215, and SN-216 saltwell lines also recently failed pressure testing because of leaks. This study documents the pertinent facts about the SL-119 line and discusses the cause of the failures. The inspection of the SL-119 failure revealed two through-the-wall holes in the top center of the pipeline. The inspection also strongly suggests that the heat tracing system is directly responsible for causing the SL-119 failure. Poor design of the heat tracing system allowed water to enter, condense, and collect in the electric metallic tubing (EMT) carbon steel conduits. Water flowed to the bottom of the elbow of the conduit and corroded out the elbow. The design also allowed drifting desert sand to enter into the conduit and fall to the bottom (elbow) of the conduit. The sand became wet and aided in the corrosion of the elbow of the conduit. After the EMT conduits corroded though, the water dripped from the corroded ends of the EMT conduits onto the top of the saltwell pipe, corroding the two holes into the top of the …
Date: August 5, 1994
Creator: Carlos, W. C.
Object Type: Report
System: The UNT Digital Library
Safety Evaluation for Packaging 101-SY Hydrogen Mitigation Mixer Pump package (open access)

Safety Evaluation for Packaging 101-SY Hydrogen Mitigation Mixer Pump package

This Safety Evaluation for Packaging (SEP) provides analysis and considered necessary to approve a one-time transfer of the 101-SY Hydrogen Mitigation Mixer Pump (HMMP). This SEP will demonstrate that the transfer of the HMMP in a new shipping container will provide an equivalent degree of safety as would be provided by packages meeting US Department of Transportation (DOT)/US Nuclear Regulatory Commission (NRC) requirements. This fulfills onsite, transportation requirements implemented by WHC-CM-2-14.
Date: October 5, 1994
Creator: Carlstrom, R. F.
Object Type: Report
System: The UNT Digital Library
Evaluation of HFIR vessel surveillance data and hydro-test conditions (open access)

Evaluation of HFIR vessel surveillance data and hydro-test conditions

None
Date: August 5, 1994
Creator: Cheverton, R. D. & Nanstad, R. K.
Object Type: Report
System: The UNT Digital Library
Addendum 3 to CSAR 80-027, Use of calorimeter 109B for fissile material measurement (open access)

Addendum 3 to CSAR 80-027, Use of calorimeter 109B for fissile material measurement

This modification to the Plutonium Finishing Plant (PFP) calorimeter system involves removing current calorimeter No. 3 from the water bath and replacing it with a calorimeter that can accommodate larger diameter items (an oversize can). The inside diameters of both the sample and the reference cells will be increased to 5.835 inches at the top opening and to 5.22 inches at the bottom, the 8 inch high measurement zone. This Addendum 3 to Criticality Safety Analysis Report 80-027 examines criticality safety during the use of the modified calorimeter (Calorimeter 109B) with enlarged cell tube diameters to assure that an adequate margin of subcriticality is maintained for all normal and contingency conditions.
Date: December 5, 1994
Creator: Chiao, T.
Object Type: Report
System: The UNT Digital Library
Estimation of Fracture Toughness of Cast Stainless Steels During Thermal Aging in LWR Systems - Revison 1. (open access)

Estimation of Fracture Toughness of Cast Stainless Steels During Thermal Aging in LWR Systems - Revison 1.

This report presents a revision of the procedure and correlations presented earlier in NUREG/CR-4513, ANL-90/42 (June 1991) for predicting the change in mechanical properties of cast stainless steel components due to thermal aging during service in light water reactors at 280-330 C (535-625 F). The correlations presented in this report are based on an expanded data base and have been optimized with mechanical-property data on cast stainless steels aged up to {approx}58,000 h at 290-350 C (554-633 F). The correlations for estimating the change in tensile stress, including the Ramberg/Osgood parameters for strain hardening, are also described. The fracture toughness J-R curve, tensile stress, and Charpy-impact energy of aged cast stainless steels are estimated from known material information. Mechanical properties of a specific cast stainless steel are estimated from the extent and kinetics of thermal embrittlement. Embrittlement of cast stainless steels is characterized in terms of room-temperature Charpy-impact energy. The extent or degree of thermal embrittlement at 'saturation,' i.e., the minimum impact energy that can be achieved for a material after long-term aging, is determined from the chemical composition of the steel. Charpy-impact energy as a function of time and temperature of reactor service is estimated from the kinetics of …
Date: October 5, 1994
Creator: Chopra, O. K. & Technology, Energy
Object Type: Report
System: The UNT Digital Library
The future of finite element applications on massively parallel supercomputers (open access)

The future of finite element applications on massively parallel supercomputers

The current focus in large scale scientific computing is upon parallel supercomputers. While still relatively unproven, these machines are being slated for production-oriented, general purpose supercomputing applications. The promise, of course, is to use massively parallel computers to venture further into scientific realisms by performing computations with anywhere from 10{sup 6} to 10{sup 9} grid points thereby, in principle, obtaining a deeper understanding of physical processes. In approaching this brave new world of computing with finite element applications, many technical issues become apparent. This paper attempts to reveal some of the applications-oriented issues which are facing code developers and ultimately the users of engineering and scientific applications on parallel supercomputers, but which seem to be remaining unanswered by vendors, researchers and centralized computing facilities. At risk is the fundamental way in which analysis is performed in a production sense, and the insight into physical problems which results. while at first this treatise may seem to advocate traditional register-to-register vector supercomputers, the goal of this paper is simply an attempt to point out what is missing from the massively parallel computing picture not only for production finite element applications, but also for grand challenge problems. the limiting issues for the use …
Date: July 5, 1994
Creator: Christon, M.
Object Type: Report
System: The UNT Digital Library
Engineering work plan for tank 241-C-103 vapor phase characterization (ECN 613188). Revision 1 (open access)

Engineering work plan for tank 241-C-103 vapor phase characterization (ECN 613188). Revision 1

The tasks described by this work plan have been completed. The purpose of this revision it to document what actually occurred during the performance of this work plan. The scope was and is limited to phases 1 and 2 as described in the program plan, revision 1. Phases 1 and 2 include the tank 241-C-103 (C-103) vapor. For economic and as low as reasonably achievable (ALARA) reasons, we will limit our scope to characterize the C-103 vapor phase for the categories that could be expected to impact facility worker safety from a toxicological and flammability standpoint. In anticipation that a vapor treatment system may be required, categories necessary for design will also be included. It will be the intent of the C-103 vapor characterization program to: (1) identify the substances from the above list of categories that are applicable to the issues involving C-103, and (2) implement a phased plan which will develop the organic vapor phase characterization method and then characterize the organics and the other selected substances to the required quantitative certainty.
Date: October 5, 1994
Creator: Conrad, R. B.
Object Type: Report
System: The UNT Digital Library
Integrated formal operations plan (open access)

Integrated formal operations plan

The concept of formal operations (that is, a collection of business practices to assure effective, accountable operations) has vexed the Laboratory for many years. To date most attempts at developing such programs have been based upon rigid, compliance-based interpretations of a veritable mountain of Department of Energy (DOE) orders, directives, notices, and standards. These DOE dictates seldom take the broad view but focus on highly specialized programs isolated from the overall context of formal operations. The result is a confusing array of specific, and often contradictory, requirements that produce a patchwork of overlapping niche programs. This unnecessary duplication wastes precious resources, dramatically increases the complexity of our work processes, and communicates a sense of confusion to our customers and regulators. Coupled with the artificial divisions that have historically existed among the Laboratory`s formal operations organizations (quality assurance, configuration management, records management, training, etc.), this approach has produced layers of increasingly vague and complex formal operations plans, each of which interprets its parent and adds additional requirements of its own. Organizational gridlock ensues whenever an activity attempts to implement these bureaucratic monstrosities. The integrated formal operations plan presented is to establish a set of requirements that must be met by an …
Date: January 5, 1994
Creator: Cort, G.; Dearholt, W.; Donahue, S.; Frank, J.; Perkins, B.; Tyler, R. et al.
Object Type: Report
System: The UNT Digital Library
Glossary of formal operations (open access)

Glossary of formal operations

The purpose of this document is to establish definitions for the terms used in the planning, development, and implementation of a formal operations program at Los Alamos National Laboratory.
Date: January 5, 1994
Creator: Cort, G.; Donahue, S.; Frank, J.; Perkins, B. & Wrye, J.
Object Type: Report
System: The UNT Digital Library
ASPEN computer simulations of the mixed waste treatment project baseline flowsheet (open access)

ASPEN computer simulations of the mixed waste treatment project baseline flowsheet

The treatment and disposal of mixed waste (i.e., waste containing both hazardous and radioactive components) is a challenging waste- management problem of particular concern to Department of Energy (DOE) sites throughout the United States. Traditional technologies used for destroying hazardous wastes must be re- evaluated for their ability to handle mixed wastes, and, in some cases, new technologies must be developed. The Mixed Waste Treatment Project (MWTP), a collaborative effort between Lawrence Livermore National Laboratory (LLNL), Los Alamos National Laboratory, and Pacific Northwest Laboratory (PNL), was established by the DOE`s Waste Operations Program (EM-30) to develop and analyze alternative mixed waste treatment approaches. One of the MWTP`s initiatives, and the objective of this study, was to develop flowsheets for prototype, integrated, mixed-waste treatment facilities that can serve as models for sites developing their own treatment strategies. Evaluation of these flowsheets is being facilitated through the use of computer modeling. The objectives of the flowsheet simulations are to compare process effectiveness and costs of alternative flowsheets and to determine if commercial process-simulation software could be used on the large, complex process of an integrated mixed waste processing facility. Flowsheet modeling is needed to evaluate many aspects of proposed flowsheet designs. A …
Date: July 5, 1994
Creator: Dietsche, L. J.; Upadhye, R. S.; Camp, D. W.; Pendergrass, J. A.; Borduin, L. C. & Thompson, T. K.
Object Type: Report
System: The UNT Digital Library
Test plan for core sampling drill bit temperature monitor (open access)

Test plan for core sampling drill bit temperature monitor

At WHC, one of the functions of the Tank Waste Remediation System division is sampling waste tanks to characterize their contents. The push-mode core sampling truck is currently used to take samples of liquid and sludge. Sampling of tanks containing hard salt cake is to be performed with the rotary-mode core sampling system, consisting of the core sample truck, mobile exhauster unit, and ancillary subsystems. When drilling through the salt cake material, friction and heat can be generated in the drill bit. Based upon tank safety reviews, it has been determined that the drill bit temperature must not exceed 180 C, due to the potential reactivity of tank contents at this temperature. Consequently, a drill bit temperature limit of 150 C was established for operation of the core sample truck to have an adequate margin of safety. Unpredictable factors, such as localized heating, cause this buffer to be so great. The most desirable safeguard against exceeding this threshold is bit temperature monitoring . This document describes the recommended plan for testing the prototype of a drill bit temperature monitor developed for core sampling by Sandia National Labs. The device will be tested at their facilities. This test plan documents the …
Date: October 5, 1994
Creator: Francis, P. M.
Object Type: Report
System: The UNT Digital Library
A charge distribution analysis instrument for catalysis and material science applications. Third quarterly technical progress report, April 1, 1994--June 30, 1994 (open access)

A charge distribution analysis instrument for catalysis and material science applications. Third quarterly technical progress report, April 1, 1994--June 30, 1994

Key component in the CDA instrument is the differential capacitive force sensor. The CDA instrument has four basic components: OEM analytical balance, flexure point and capacitor plates, gas confinement tower and high-voltage bias electrodes, and the furnace. Phyton is in position to purchase an OEM analytical balance; negotations are underway for obtaining the feedback control circuitry for the differential capacitive force sensor. Progress with the differential capacitive force sensor is reviewed.
Date: August 5, 1994
Creator: Freund, F.
Object Type: Report
System: The UNT Digital Library
Borehole completion data package for well 199-N-81 (open access)

Borehole completion data package for well 199-N-81

Well 199-N-81 was drilled in 1993 as a RCRA groundwater monitoring for the 1324-N network. The well is completed at the top of the uppermost aquifer, in the Ringold Formation. This data package includes information on drilling, construction, development, and aquifer testing. Copies of forms, notes, and diagrams completed in the field comprise the bulk of this document. Few interpretations are included. Lithologic contacts were picked by the site geologist. An attempt was made to interpret aquifer test data.
Date: May 5, 1994
Creator: Hartman, M. J.
Object Type: Report
System: The UNT Digital Library
Reviews of computing technology: Software overview (open access)

Reviews of computing technology: Software overview

The Savannah River Site Computing Architecture states that the site computing environment will be standards-based, data-driven, and workstation-oriented. Larger server systems deliver needed information to users in a client-server relationship. Goals of the Architecture include utilizing computing resources effectively, maintaining a high level of data integrity, developing a robust infrastructure, and storing data in such a way as to promote accessibility and usability. This document describes the current storage environment at Savannah River Site (SRS) and presents some of the problems that will be faced and strategies that are planned over the next few years.
Date: January 5, 1994
Creator: Hartshorn, W. R. & Johnson, A. L.
Object Type: Report
System: The UNT Digital Library
CSER 94-014: Storage of metal-fuel loaded EBR-II casks in concrete vault on PFP grounds (open access)

CSER 94-014: Storage of metal-fuel loaded EBR-II casks in concrete vault on PFP grounds

A criticality safety evaluation is presented to permit EBR-2 spent fuel casks loaded with metallic fuel rods to be stored in an 8-ft diameter, cylindrical concrete vault inside the PFP security perimeter. The specific transfer of three casks with Pu alloy fuel from the Los Alamos Molten Plutonium Reactor Experiment from the burial grounds to the vault is thus covered. Up to seven casks may be emplaced in the casing with 30 inches center to center spacing. Criticality safety is assured by definitive packaging rules which keep the fissile medium dry and at a low effective volumetric density.
Date: December 5, 1994
Creator: Hess, A. L.
Object Type: Report
System: The UNT Digital Library
Simulation Models for Computational Plasma Physics: Concluding Report (open access)

Simulation Models for Computational Plasma Physics: Concluding Report

In this project, the authors enhanced their ability to numerically simulate bounded plasmas that are dominated by low-frequency electric and magnetic fields. They moved towards this goal in several ways; they are now in a position to play significant roles in the modeling of low-frequency electromagnetic plasmas in several new industrial applications. They have significantly increased their facility with the computational methods invented to solve the low frequency limit of Maxwell`s equations (DiPeso, Hewett, accepted, J. Comp. Phys., 1993). This low frequency model is called the Streamlined Darwin Field model (SDF, Hewett, Larson, and Doss, J. Comp. Phys., 1992) has now been implemented in a fully non-neutral SDF code BEAGLE (Larson, Ph.D. dissertation, 1993) and has further extended to the quasi-neutral limit (DiPeso, Hewett, Comp. Phys. Comm., 1993). In addition, they have resurrected the quasi-neutral, zero-electron-inertia model (ZMR) and began the task of incorporating internal boundary conditions into this model that have the flexibility of those in GYMNOS, a magnetostatic code now used in ion source work (Hewett, Chen, ICF Quarterly Report, July--September, 1993). Finally, near the end of this project, they invented a new type of banded matrix solver that can be implemented on a massively parallel computer -- …
Date: March 5, 1994
Creator: Hewett, D. W.
Object Type: Report
System: The UNT Digital Library
Final report: In situ radio frequency heating demonstration (open access)

Final report: In situ radio frequency heating demonstration

A field demonstration of in situ radio frequency heating was performed at the Savannah River Site (SRS) as part of the US Department of Energy-Office of Technology Development`s Integrated Demonstration. The objective of the demonstration was to investigate the effectiveness of in situ radio frequency (RF) heating as an enhancement to vacuum extraction of residual solvents (primarily trichloroethylene and perchloroethylene) held in vadose zone clay deposits. Conventional soil vacuum extraction techniques are mass transfer limited because of the low permeabilities of the clays. By selectively heating the clays to temperatures at or above 100{degrees}C, the release or transport of the solvent vapors will be enhanced as a result of several factors including an increase in the contaminant vapor pressure and diffusivity and an increase in the effective permeability of the formation with the release of water vapor.
Date: January 5, 1994
Creator: Jarosch, T. R.; Beleski, R. J. & Faust, D.
Object Type: Report
System: The UNT Digital Library
Refining of fossil resin flotation concentrate from Western coal. Fourth quarterly final report, October 1, 1993--December 31, 1993 (open access)

Refining of fossil resin flotation concentrate from Western coal. Fourth quarterly final report, October 1, 1993--December 31, 1993

Four resinite types, namely yellow, amber, light-brown, and dark-brown in color, occurring in the Wasatch Plateau coal field, are mainly composed of aliphatic components. In contrast coal consists primarily of aromatic ring structures, various oxygen functional groups ({minus}OH, >C=O, {minus}C{minus}O) and few aliphatic chains. The color difference observed among the four hand-sorted resin types is explained by the presence of chromophores (O, S, and N atoms and C=C double bonds) and also by the presence of finely dispersed coal particle inclusions in the resin matrix. The extraction rate for these resin types follows the order yellow > amber > light-brown > dark-brown. Hexane purified resin from all resin types closely resembles the properties of the physically separated yellow resin. Resinites are distinct from other coal macerals, which show a high heat value and high volatile matter content. The four resin types also show distinct differences among certain physical and chemical properties such as density, and softening point. All these properties were noted to change gradually from yellow to dark-brown resin.
Date: January 5, 1994
Creator: Jensen, G. F. & Miller, J. D.
Object Type: Report
System: The UNT Digital Library