Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team (open access)

Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team

The Performance Engineering Institute (PERI) originally proposed a tiger team activity as a mechanism to target significant effort optimizing key Office of Science applications, a model that was successfully realized with the assistance of two JOULE metric teams. However, the Office of Science requested a new focus beginning in 2008: assistance in forming its ten year facilities plan. To meet this request, PERI formed the Architecture Tiger Team, which is modeling the performance of key science applications on future architectures, with S3D, FLASH and GTC chosen as the first application targets. In this activity, we have measured the performance of these applications on current systems in order to understand their baseline performance and to ensure that our modeling activity focuses on the right versions and inputs of the applications. We have applied a variety of modeling techniques to anticipate the performance of these applications on a range of anticipated systems. While our initial findings predict that Office of Science applications will continue to perform well on future machines from major hardware vendors, we have also encountered several areas in which we must extend our modeling techniques in order to fulfill our mission accurately and completely. In addition, we anticipate that …
Date: June 26, 2009
Creator: de Supinski, Bronis R.; Alam, Sadaf; Bailey, David H.; Carrington, Laura; Daley, Chris; Dubey, Anshu et al.
System: The UNT Digital Library
Determining Lamprey Species Composition, Larval Distribution and Adult Abundance in the Deschutes River Subbasin, Oregon ; 2007 Annual Report. (open access)

Determining Lamprey Species Composition, Larval Distribution and Adult Abundance in the Deschutes River Subbasin, Oregon ; 2007 Annual Report.

We will report results of an ongoing project in the Deschutes River Subbasin to describe Pacific lamprey (Lampetra tridentata) life history. Project objectives were to determine adult lamprey escapement from Sherars Falls located at Rkm 70.4 and determine lamprey focal spawning areas, spawn timing and habitat through radio telemetry. A mark-recapture study and tribal creel was conducted to determine adult escapement. Lamprey were radio tagged and are currently being mobile, aerial and fixed site tracked to describe spawning. Adult lamprey were collected at Sherars Falls using a long-handled dip net from June-September 2007. The fate of lamprey collected at Sherars Falls was determined based on girth measurements. Fish measuring less than 10.5 cm received two markings for the mark-recapture estimation while those measuring 10.5 cm or greater were implanted with radio transmitters. Two-hundred and nine lamprey were marked during first event sampling, 2,501 lamprey inspected for marks and 64 recaptured during second event sampling. We estimate lamprey abundance to be 8,083 (6,352-10,279) with a relative precision of 19.8. Tribal harvest was 2,303 +/- 88. Escapement was estimated at 5,780 adult lamprey. Thirty-six lamprey received radio transmitters. Lamprey were transported upstream 6.3 Rkm for surgery, held to recover from anesthesia and …
Date: June 26, 2009
Creator: Fox, Matt & Graham, Jennifer C.
System: The UNT Digital Library
An Assessment of the Commercial Availability of Carbon Dioxide Capture and Storage Technologies as of June 2009 (open access)

An Assessment of the Commercial Availability of Carbon Dioxide Capture and Storage Technologies as of June 2009

Currently, there is considerable confusion within parts of the carbon dioxide capture and storage (CCS) technical and regulatory communities regarding the maturity and commercial readiness of the technologies needed to capture, transport, inject, monitor and verify the efficacy of carbon dioxide (CO2) storage in deep, geologic formations. The purpose of this technical report is to address this confusion by discussing the state of CCS technological readiness in terms of existing commercial deployments of CO2 capture systems, CO2 transportation pipelines, CO2 injection systems and measurement, monitoring and verification (MMV) systems for CO2 injected into deep geologic structures. To date, CO2 has been captured from both natural gas and coal fired commercial power generating facilities, gasification facilities and other industrial processes. Transportation via pipelines and injection of CO2 into the deep subsurface are well established commercial practices with more than 35 years of industrial experience. There are also a wide variety of MMV technologies that have been employed to understand the fate of CO2 injected into the deep subsurface. The four existing end-to-end commercial CCS projects – Sleipner, Snøhvit, In Salah and Weyburn – are using a broad range of these technologies, and prove that, at a high level, geologic CO2 storage …
Date: June 26, 2009
Creator: Dooley, James J.; Davidson, Casie L. & Dahowski, Robert T.
System: The UNT Digital Library
Kootenai River Resident Fish Assessment, FY2008 KTOI Progress Report. (open access)

Kootenai River Resident Fish Assessment, FY2008 KTOI Progress Report.

The overarching goal of project 1994-049-00 is to recover a productive, healthy and biologically diverse Kootenai River ecosystem, with emphasis on native fish species rehabilitation. It is especially designed to aid the recovery of important fish stocks, i.e. white sturgeon, burbot, bull trout, kokanee and several other salmonids important to the Kootenai Tribe of Idaho and regional sport-fisheries. The objectives of the project have been to address factors limiting key fish species within an ecosystem perspective. Major objectives include: establishment of a comprehensive and thorough biomonitoring program, investigate ecosystem--level in-river productivity, test the feasibility of a large-scale Kootenai River nutrient addition experiment (completed), to evaluate and rehabilitate key Kootenai River tributaries important to the health of the lower Kootenai River ecosystem, to provide funding for Canadian implementation of nutrient addition and monitoring in the Kootenai River ecosystem (Kootenay Lake) due to lost system productivity created by construction and operation of Libby Dam, mitigate the cost of monitoring nutrient additions in Arrow Lakes due to lost system productivity created by the Libby-Arrow water swap, provide written summaries of all research and activities of the project, and, hold a yearly workshop to convene with other agencies and institutions to discuss management, research, …
Date: June 26, 2009
Creator: Holderman, Charles
System: The UNT Digital Library
Experimental Mathematics and Mathematical Physics (open access)

Experimental Mathematics and Mathematical Physics

One of the most effective techniques of experimental mathematics is to compute mathematical entities such as integrals, series or limits to high precision, then attempt to recognize the resulting numerical values. Recently these techniques have been applied with great success to problems in mathematical physics. Notable among these applications are the identification of some key multi-dimensional integrals that arise in Ising theory, quantum field theory and in magnetic spin theory.
Date: June 26, 2009
Creator: Bailey, David H.; Borwein, Jonathan M.; Broadhurst, David & Zudilin, Wadim
System: The UNT Digital Library
Experimental computation with oscillatory integrals (open access)

Experimental computation with oscillatory integrals

A previous study by one of the present authors, together with D. Borwein and I. Leonard [8], studied the asymptotic behavior of the p-norm of the sinc function: sinc(x) = (sin x)/x and along the way looked at closed forms for integer values of p. In this study we address these integrals with the tools of experimental mathematics, namely by computing their numerical values to high precision, both as a challenge in itself, and also in an attempt to recognize the numerical values as closed-form constants. With this approach, we are able to reproduce several of the results of [8] and to find new results, both numeric and analytic, that go beyond the previous study.
Date: June 26, 2009
Creator: Bailey, David H. & Borwein, Jonathan M.
System: The UNT Digital Library
Final Scientific Report (open access)

Final Scientific Report

Viscosities of water, nitrogen and carbon dioxide have been measured at elevated pressures and temperatures in the diamond-anvil cell. A strong correlation between viscosity and entropy has been confirmed.
Date: June 26, 2009
Creator: Abramson, Evan
System: The UNT Digital Library
Use of Dual Frequency Identification Sonar to Determine Adult Chinook Salmon (Oncorhynchus tshawytscha) Escapement in the Secesh River, Idaho ; Annual Report, January 2008 – December 2008. (open access)

Use of Dual Frequency Identification Sonar to Determine Adult Chinook Salmon (Oncorhynchus tshawytscha) Escapement in the Secesh River, Idaho ; Annual Report, January 2008 – December 2008.

Chinook salmon in the Snake River basin were listed as threatened under the Endangered Species Act in 1992 (NMFS 1992). The Secesh River represents the only stream in the Snake River basin where natural origin (wild) salmon escapement monitoring occurs at the population level, absent a supplementation program. As such the Secesh River has been identified as a long term salmon escapement and productivity monitoring site by the Nez Perce Tribe Department of Fisheries Resources Management. Salmon managers will use this data for effective population management and evaluation of the effect of conservation actions on a natural origin salmon population. The Secesh River also acts as a reference stream for supplementation program comparison. Dual frequency identification sonar (DIDSON) was used to determine adult spring and summer Chinook salmon escapement in the Secesh River in 2008. DIDSON technology was selected because it provided a non-invasive method for escapement monitoring that avoided listed species trapping and handling incidental mortality, and fish impedance related concerns. The DIDSON monitoring site was operated continuously from June 13 to September 14. The first salmon passage was observed on July 3. DIDSON site total estimated salmon escapement, natural and hatchery fish, was 888 fish {+-} 65 fish …
Date: June 26, 2009
Creator: Kucera, Paul A.
System: The UNT Digital Library
The Linearly Scaling 3D Fragment Method for Large Scale Electronic Structure Calculations (open access)

The Linearly Scaling 3D Fragment Method for Large Scale Electronic Structure Calculations

The Linearly Scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.
Date: June 26, 2009
Creator: Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David et al.
System: The UNT Digital Library