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Non-destructive Identification of Individual Leukemia Cells by Optical Trapping Raman Spectroscopy (open access)

Non-destructive Identification of Individual Leukemia Cells by Optical Trapping Raman Spectroscopy

Currently, a combination of technologies is typically required to assess the malignancy of cancer cells. These methods often lack the specificity and sensitivity necessary for early, accurate diagnosis. Here we demonstrate using clinical samples the application of laser trapping Raman spectroscopy as a novel approach that provides intrinsic biochemical markers for the noninvasive detection of individual cancer cells. The Raman spectra of live, hematopoietic cells provide reliable molecular fingerprints that reflect their biochemical composition and biology. Populations of normal T and B lymphocytes from four healthy individuals, and cells from three leukemia patients were analyzed, and multiple intrinsic Raman markers associated with DNA and protein vibrational modes have been identified that exhibit excellent discriminating power for cancer cell identification. A combination of two multivariate statistical methods, principal component analysis (PCA) and linear discriminant analysis (LDA), was used to confirm the significance of these markers for identifying cancer cells and classifying the data. The results indicate that, on average, 95% of the normal cells and 90% of the patient cells were accurately classified into their respective cell types. We also provide evidence that these markers are unique to cancer cells and not purely a function of differences in their cellular activation.
Date: March 5, 2007
Creator: Chan, J W; Taylor, D S; Lane, S; Zwerdling, T; Tuscano, J & Huser, T
System: The UNT Digital Library
OFFGAS GENERATION FROM THE DISPOSITION OF SCRAP PLUTONIUM BY VITRIFICATION SIMULANT TESTS (open access)

OFFGAS GENERATION FROM THE DISPOSITION OF SCRAP PLUTONIUM BY VITRIFICATION SIMULANT TESTS

The Department of Energy Office of Environmental Management is supporting R&D for the conceptual design of the Plutonium Disposition Project at the Savannah River Site in Aiken, SC to reduce the attractiveness of plutonium scrap by fabricating a durable plutonium oxide glass form and immobilizing this form within the high-level waste glass prepared in the Defense Waste Processing Facility. A glass formulation was developed that is capable of incorporating large amounts of actinides as well as accommodating many impurities that may be associated with impure Pu feed streams. The basis for the glass formulation was derived from commercial glasses that had high lanthanide loadings. A development effort led to a Lanthanide BoroSilicate (LaBS) glass that accommodated significant quantities of actinides, tolerated impurities associated with the actinide feed streams and could be processed using established melter technologies. A Cylindrical Induction Melter (CIM) was used for vitrification of the Pu LaBS glass. Induction melting for the immobilization of americium and curium (Am/Cm) in a glass matrix was first demonstrated in 1997. The induction melting system was developed to vitrify a non-radioactive Am/Cm simulant combined with a glass frit. Most of the development of the melter itself was completed as part of that …
Date: March 5, 2008
Creator: Zamecnik, J; Patricia Toole, P; David Best, D; Timothy Jones, T; Donald02 Miller, D; Whitney Thomas, W et al.
System: The UNT Digital Library
The 1997/98 El Nino: A Test for Climate Models (open access)

The 1997/98 El Nino: A Test for Climate Models

Version 3 of the Hadley Centre Atmospheric Model (HadAM3) has been used to demonstrate one means of comparing a general circulation model with observations for a specific climate perturbation, namely the strong 1997/98 El Nino. This event was characterized by the collapse of the tropical Pacific's Walker circulation, caused by the lack of a zonal sea surface temperature gradient during the El Nino. Relative to normal years, cloud altitudes were lower in the western portion of the Pacific and higher in the eastern portion. HadAM3 likewise produced the observed collapse of the Walker circulation, and it did a reasonable job of reproducing the west/east cloud structure changes. This illustrates that the 1997/98 El Nino serves as a useful means of testing cloud-climate interactions in climate models.
Date: March 5, 2004
Creator: Lu, R; Dong, B; Cess, R D & Potter, G L
System: The UNT Digital Library
Status of Optical Coatings for the National Ignition Facility (open access)

Status of Optical Coatings for the National Ignition Facility

Optical coatings are a crucial part of the pulse trapping and extraction in the NIF multipass amplifiers. Coatings also steer the 192 beams from four linear arrays to four converging cones entering the target chamber. There are a total of 1600 physical vapor deposited coatings on NIF consisting of 576 mirrors within the multipass cavity, 192 polarizers that work in tandem with a Pockels cell to create an optical switch, and 832 transport mirrors. These optics are of sufficient size so that they are not aperture-limiting for the 40-cm x 40 cm beams over an incident range of 0 to 56.4 degrees. These coatings must withstand laser fluences up to 25 J/cm{sup 2} at 1053 nm (1 {omega}) and 3-ns pulse length and are the 1{omega} fluence-limiting component on NIF. The coatings must have a minimal impact on the beam wavefront and phase to maintain beam focusability, minimize scattered loss, and minimize nonlinear damage mechanisms. This is achieved by specifications ranging from <50 MPa coating stress, <1% coating nonuniformity, <4{angstrom} RMS surface roughness, and a PSD specification to control the amplitude of periodic spatial frequencies. Finally, the primary mission of optical coatings is efficient beam steering so reflection and transmission …
Date: March 5, 2001
Creator: Stolz, C. J.; Weinzapfel, C.; Rogowski, G. T.; Smith, D.; Rigatti, A.; Oliver, J. et al.
System: The UNT Digital Library
Applying Loop Optimizations to Object-oriented Abstractions Through General Classification of Array Semantics (open access)

Applying Loop Optimizations to Object-oriented Abstractions Through General Classification of Array Semantics

Optimizing compilers have a long history of applying loop transformations to C and Fortran scientific applications. However, such optimizations are rare in compilers for object-oriented languages such as C++ or Java, where loops operating on user-defined types are left unoptimized due to their unknown semantics. Our goal is to reduce the performance penalty of using high-level object-oriented abstractions. We propose an approach that allows the explicit communication between programmers and compilers. We have extended the traditional Fortran loop optimizations with an open interface. Through this interface, we have developed techniques to automatically recognize and optimize user-defined array abstractions. In addition, we have developed an adapted constant-propagation algorithm to automatically propagate properties of abstractions. We have implemented these techniques in a C++ source-to-source translator and have applied them to optimize several kernels written using an array-class library. Our experimental results show that using our approach, applications using high-level abstractions can achieve comparable, and in cases superior, performance to that achieved by efficient low-level hand-written codes.
Date: March 5, 2004
Creator: Yi, Q & Quinlan, D
System: The UNT Digital Library
Reinvestigation of the Direct Two-proton Decay of the Long-lived Isomer 94Agm [0.4 s, 6.7 MeV, (21+)] (open access)

Reinvestigation of the Direct Two-proton Decay of the Long-lived Isomer 94Agm [0.4 s, 6.7 MeV, (21+)]

An attempt to confirm the reported direct one-proton and two-proton decays of the (21+) isomer at 6.7(5) MeV in 94Ag has been made. The 0.39(4) s half-life of the isomer permitted use of a helium-jet system to transport reaction products from the 40Ca + natNi reaction at 197 MeV to a low-background area; 24 gas Delta E-(Si) E detector telescopes were used to identify emitted protons down to 0.4 MeV. No evidence was obtained for two-proton radioactivity with a summed energy of 1.9(1) MeV and a branching ratio of 0.5(3)percent. Two groups of one-proton radioactivity from this isomer had also been reported; our data confirm the lower energy group at 0.79(3) MeV with its branching ratio of 1.9(5)percent.
Date: March 5, 2009
Creator: Cerny, J.; Moltz, D. M.; Lee, D. W.; Perajarvi, K.; Barquest, B. R.; Grossman, L. E. et al.
System: The UNT Digital Library
The Confinement Problem in Lattice Gauge Theory (open access)

The Confinement Problem in Lattice Gauge Theory

I review investigations of the quark confinement mechanism that have been carried out in the framework of SU(N) lattice gauge theory. The special role of Z(N) center symmetry is emphasized.
Date: March 5, 2003
Creator: Greensite, J.
System: The UNT Digital Library
Laboratory Investigations of a Low-Swirl Injector with H2 and CH4 at Gas Turbine Conditions (open access)

Laboratory Investigations of a Low-Swirl Injector with H2 and CH4 at Gas Turbine Conditions

Laboratory experiments were conducted at gas turbine and atmospheric conditions (0.101 < P{sub 0} < 0.810 MPa, 298 < T{sub 0} < 580K, 18 < U{sub 0} < 60 m/s) to characterize the overall behaviors and emissions of the turbulent premixed flames produced by a low-swirl injector (LSI) for gas turbines. The objective was to investigate the effects of hydrogen on the combustion processes for the adaptation to gas turbines in an IGCC power plant. The experiments at high pressures and temperatures showed that the LSI can operate with 100% H{sub 2} at up to {phi} = 0.5 and has a slightly higher flashback tolerance than an idealized high-swirl design. With increasing H{sub 2} fuel concentration, the lifted LSI flame begins to shift closer to the exit and eventually attaches to the nozzle rim and assumes a different shape at 100% H{sub 2}. The STP experiments show the same phenomena. The analysis of velocity data from PIV shows that the stabilization mechanism of the LSI remains unchanged up to 60% H{sub 2}. The change in the flame position with increasing H{sub 2} concentration is attributed to the increase in the turbulent flame speed. The NO{sub x} emissions show a log …
Date: March 5, 2008
Creator: Cheng, R. K.; Littlejohn, D.; Strakey, P.A. & Sidwell, T.
System: The UNT Digital Library
Design, Installation and Performance of the New insulator for NSTX CHI Experiments (open access)

Design, Installation and Performance of the New insulator for NSTX CHI Experiments

Coaxial Helicity Injection (CHI), a non-inductive method to initiate plasma and generate toroidal plasma current, is being investigated in the National Spherical Torus Experiment (NSTX). The center stack and outer vacuum vessel are separated by insulating gaps at the top and bottom of the slim central column so that a high voltage (up to 2 kV) can be applied between them from a pulsed power supply or a capacitor bank to initiate an arc discharge. In the presence of a suitable poloidal magnetic field, the discharge is initiated at the lower gap (the injector gap) and because of the strong toroidal field develops a helical structure resulting in substantial toroidal plasma current being driven. In NSTX, up to 390 kA of toroidal current has been generated for an injected current of 25 kA. The early investigations of CHI however frequently developed arcs across the insulator at the top of the machine (the absorber gap), which terminated the desired discharge. This arcing greatly restricted the operational space available for CHI studies. During 2002, the absorber region was modified to suppress these arcs. The new design includes a new ceramic insulator on the high field side of the absorber region with a …
Date: March 5, 2008
Creator: Mueller, D.; Chrzanowski, J.; Gates, D.; Menard, J.; Raman, R.; Jarboe, T. R. et al.
System: The UNT Digital Library
Theory Challenges of the Accelerating Universe (open access)

Theory Challenges of the Accelerating Universe

The accelerating expansion of the universe presents an exciting, fundamental challenge to the standard models of particle physics and cosmology. I highlight some of the outstanding challenges in both developing theoretical models and interpreting without bias the observational results from precision cosmology experiments in the next decade that will return data to help reveal the nature of the new physics. Examples given focus on distinguishing a new component of energy from a new law of gravity, and the effect of early dark energy on baryon acoustic oscillations.
Date: March 5, 2007
Creator: Linder, Eric V.
System: The UNT Digital Library
The KamLAND Full-Volume Calibration System (open access)

The KamLAND Full-Volume Calibration System

We have successfully built and operated a source deployment system for the KamLAND detector. This system was used to position radioactive sources throughout the delicate 1-kton liquid scintillator volume, while meeting stringent material cleanliness, material compatibility, and safety requirements. The calibration data obtained with this device were used to fully characterize detector position and energy reconstruction biases. As a result, the uncertainty in the size of the detector fiducial volume was reduced by a factor of two. Prior to calibration with this system, the fiducial volume was the largest source of systematic uncertainty in measuring the number of antineutrinos detected by KamLAND. This paper describes the design, operation and performance of this unique calibration system.
Date: March 5, 2009
Creator: Collaboration, KamLAND; Berger, B. E.; Busenitz, J.; Classen, T.; Decowski, M. P.; Dwyer, D. A. et al.
System: The UNT Digital Library
A Three-Year Study of Ichyoplankton in Coastal Plains Reaches of the Savannah River Site and its Tributaries (open access)

A Three-Year Study of Ichyoplankton in Coastal Plains Reaches of the Savannah River Site and its Tributaries

Altering flow regimes of rivers has large effects on native floras and faunas because native species are adapted to the natural flow regime, many species require lateral connectivity with floodplain habitat for feeding or spawning, and the change in regime often makes it possible for invasive species to replace natives (Bunn & Arthington 2002). Floodplain backwaters, both permanent and temporary, are nursery areas for age 0+ fish and stable isotope studies indicate that much of the productivity that supports fish larvae is autochthonous to these habitats (Herwig et al. 2004). Limiting access by fish to floodplain habitat for feeding, spawning and nursery habitat is one of the problems noted with dams that regulate flow in rivers and is considered to be important as an argument to remove dams and other flow regulating structures from rivers (Shuman 1995; Bednarek 2001). While there have been a number of studies in the literature about the use of floodplain habitat for fish reproduction (Copp 1989; Killgore & Baker 1996; Humphries, et al. 1999; Humphries and Lake 2000; Crain et al. 2004; King 2004) there have been only a few studies that examined this aspect of stream ecology in more than a cursory way. The …
Date: March 5, 2007
Creator: Martin, D.
System: The UNT Digital Library
A Topology of On/Off Marx Modulator with Protection of Load and Solid State Switches (open access)

A Topology of On/Off Marx Modulator with Protection of Load and Solid State Switches

This article discusses a proposal for an ultra fast feedback response that will protect the load and solid state switches of the ON/OFF Marx type modulators. The feedback guards main elements of a modulator against possible arcs in the load, particularly arcs inside of the electron guns. The chief concept behind the proposed response system is an employment of a fraction of the output modulator power as a controlling and guarding pulse during the delivery time. The time constant of the proposed feedback loop lies in the nanosecond range. Peculiarities of proposed topology are discussed.
Date: March 5, 2007
Creator: Krasnykh, Anatoly
System: The UNT Digital Library
XMM-Newton Observations Reveal the X-ray Counterpart of the Very-high-energy gamma-ray Source HESS J1640-465 (open access)

XMM-Newton Observations Reveal the X-ray Counterpart of the Very-high-energy gamma-ray Source HESS J1640-465

We present X-ray observations of the as of yet unidentified very high-energy (VHE) {gamma}-ray source HESS J1640-465 with the aim of establishing a counterpart of this source in the keV energy range, and identifying the mechanism responsible for the VHE emission. The 21.8 ksec XMM-Newton observation of HESS J1640-465 in September 2005 represents a significant improvement in sensitivity and angular resolution over previous ASCA studies in this region. These new data show a hard-spectrum X-ray emitting object at the centroid of the H.E.S.S. source, within the shell of the radio Supernova Remnant (SNR) G338.3-0.0. This object is consistent with the position and flux previously measured by both ASCA and Swift-XRT but is now shown to be significantly extended. We argue that this object is very likely the counterpart to HESS J1640-465 and that both objects may represent the Pulsar Wind Nebula of an as of yet undiscovered pulsar associated with G338.3-0.0.
Date: March 5, 2007
Creator: Funk, S.; Hinton, J. A.; Puhlhofer, G.; Aharonian, F. A.; Hofmann, W.; Reimer, O. et al.
System: The UNT Digital Library
A Monte Carlo Method for Calculating Initiation Probability (open access)

A Monte Carlo Method for Calculating Initiation Probability

A Monte Carlo method for calculating the probability of initiating a self-sustaining neutron chain reaction has been developed. In contrast to deterministic codes which solve a non-linear, adjoint form of the Boltzmann equation to calculate initiation probability, this new method solves the forward (standard) form of the equation using a modified source calculation technique. Results from this new method are compared with results obtained from several deterministic codes for a suite of historical test problems. The level of agreement between these code predictions is quite good, considering the use of different numerical techniques and nuclear data. A set of modifications to the historical test problems has also been developed which reduces the impact of neutron source ambiguities on the calculated probabilities.
Date: March 5, 2007
Creator: Greenman, G M; Procassini, R J & Clouse, C J
System: The UNT Digital Library
e-/e+ Accelerating Structure with Cyclic Variation of Azimuth Asymmetry (open access)

e-/e+ Accelerating Structure with Cyclic Variation of Azimuth Asymmetry

A classical electron/positron accelerating structure is a disk-loaded cylindrical waveguide. The accelerator structure here has azimuth symmetry. The proposed structure contains a disk-loaded cylindrical waveguide where there is a periodical change of RF-field vs. azimuth. The modulation deforms the rf-field in such a manner that the accelerated particles undergo transverse focusing forces. The new class of accelerator structures covers the initial part of e+/e- linacs where a bunch is not rigid and additional transverse focusing fields are necessary. We discuss a bunch formation with a high transverse aspect ratio in the proposed structure and particularly in the photoinjector part of a linac.
Date: March 5, 2007
Creator: Krasnykh, A.
System: The UNT Digital Library
Employment of Second Order Ruled Surfaces in Design of Sheet Beam Guns (open access)

Employment of Second Order Ruled Surfaces in Design of Sheet Beam Guns

A novel 3D method of sheet beam gun design has recently been developed. Second order ruled surfaces (SORS) can be used to define the geometry of the gun electrodes. The gun design process is made simpler if SORS are derived from analytical formulas. A proposed method is discussed and illustrated.
Date: March 5, 2007
Creator: Krasnykh, Anatoly
System: The UNT Digital Library
A Coreless Approaches for On/Off Marx Type Modulators (open access)

A Coreless Approaches for On/Off Marx Type Modulators

SLAC was first to report using ON/OFF switches in Marx type modulator. The development of Marx type modulator was bounded with the NLC need. The high energy physics runs based on the ILC concept where longer modulator pulse width is required. The SLAC idea of coreless modulators was useful for other applications (medicine, military, home security, etc.). The discussed conception is presented as a continuation of the earlier published articles. Several types of the Marx ON/OFF type modulators are under consideration. This article describes the new coreless approach, based on the solid state ON/OFF Marx's topology. An AC high voltage network feeds individual Marx's cells through the inductive and diode assemblies. Further integration of the ON/OFF Marx type modulator and its power supply is proposed. Two topologies are under consideration. The first scheme is an integration of DC/DC converters with ON/OFF Marx. The second topology is based on the usage of AC network directly with ON/OFF Marx scheme.
Date: March 5, 2007
Creator: Krasnykh, Anatoly
System: The UNT Digital Library
Radiative Penguin Decays at the B Factories (open access)

Radiative Penguin Decays at the B Factories

Recent results from the B-Factories on radiative decays such as b {yields} s(d){gamma}, b {yields} s{ell}{ell} and leptonic decay B{sup 0} {yields} {tau}{sup +}{tau}{sup -} are reviewed.
Date: March 5, 2007
Creator: Cuhadar-Donszelmann, T. & U., /British Columbia
System: The UNT Digital Library
Wheat phytotoxicity from arsenic and cadmium separately and together in solution culture and in a calcareous soil (open access)

Wheat phytotoxicity from arsenic and cadmium separately and together in solution culture and in a calcareous soil

The toxicity effect of two deleterious elements of arsenic (As) and cadmium (Cd) (individually or in combination) on root elongation of wheat seedlings (Triticum aestivum, L.) were investigated both in hydroponics and in soils freshly spiked with the toxic elements. Median effective concentration (EC{sub 50}) and non-observed effect concentration (NOEC) were used to investigate the toxic thresholds and potencies of the two elements. The EC{sub 50} for As was 0.97 {mu}M in hydroponics and 196 mg {center_dot} kg{sup -1} in soil, and 4.32 {mu}M and 449 mg {center_dot} kg{sup -1} for Cd, respectively. Toxic unit (TU) and additive index (AI) concepts were introduced to determine the combined outcomes, and different behaviors were obtained: synergism in solution culture (EC{sub 50mix} = 0.36 TU{sub mix} and AI: 1.76) and antagonism in soil experiments (EC{sub 50mix} = 1.49 TU{sub mix} and AI: -0.33). Furthermore, the data of soil bioavailable As and Cd can not explain the discrepancy between the results derived from soil and hydroponics experiments.
Date: March 5, 2007
Creator: Cao, Q.; Hu, Q.; Khan, S.; Wang, Z.; Lin, A.; Du, X. et al.
System: The UNT Digital Library
Planarization of High Aspect Ratio P-I-N Diode Pillar Arrays for Blanket Electrical Contacts (open access)

Planarization of High Aspect Ratio P-I-N Diode Pillar Arrays for Blanket Electrical Contacts

Two planarization techniques for high aspect ratio three dimensional pillar structured P-I-N diodes have been developed in order to enable a continuous coating of metal on the top of the structures. The first technique allows for coating of structures with topography through the use of a planarizing photoresist followed by RIE etch back to expose the tops of the pillar structure. The second technique also utilizes photoresist, but instead allows for planarization of a structure in which the pillars are filled and coated with a conformal coating by matching the etch rate of the photoresist to the underlying layers. These techniques enable deposition using either sputtering or electron beam evaporation of metal films to allow for electrical contact to the tops of the underlying pillar structure. These processes have potential applications for many devices comprised of 3-D high aspect ratio structures. Two separate processes have been developed in order to ensure a uniform surface for deposition of an electrode on the {sup 10}Boron filled P-I-N pillar structured diodes. Each uses S1518 photoresist in order to achieve a relatively uniform surface despite the non-uniformity of the underlying detector. Both processes allow for metallization of the final structure and provide good electrical …
Date: March 5, 2009
Creator: Voss, L F; Shao, Q; Reinhardt, C E; Graff, R T; Conway, A M; Nikolic, R J et al.
System: The UNT Digital Library
Miscoding properties of 1,N{sup 6}-ethanoadenine, a DNA adduct derived from reaction with antitumor agent 1,3-bis(2-chloroethyl)-1-nitrosourea (open access)

Miscoding properties of 1,N{sup 6}-ethanoadenine, a DNA adduct derived from reaction with antitumor agent 1,3-bis(2-chloroethyl)-1-nitrosourea

1,N{sup 6}-Ethanoadenine (EA) is an exocyclic adduct formed from DNA reaction with the antitumor agent, 1,3-bis(2-chloroethyl)-1-nitrosourea (BCNU). To understand the role of this adduct in the mechanism of mutagenicity or carcinogenicity by BCNU, an oligonucleotide with a site-specific EA was synthesized using phosphoramidite chemistry. We now report the in vitro miscoding properties of EA in translesion DNA synthesis catalyzed by mammalian DNA polymerases (pols) {alpha}, {beta}, {eta} and {iota}. These data were also compared with those obtained for the structurally related exocyclic adduct, 1,N{sup 6}-ethenoadenine ({var_epsilon}A). Using a primer extension assay, both pols {alpha} and {beta} were primarily blocked by EA or {var_epsilon}A with very minor extension. Pol {eta} a member of the Y family of polymerases, was capable of catalyzing a significant amount of bypass across both adducts. Pol {eta} incorporated all four nucleotides opposite EA and {var_epsilon}A, but with differential preferences and mainly in an error-prone manner. Human pol {iota}, a paralog of human pol {eta}, was blocked by both adducts with a very small amount of synthesis past {var_epsilon}A. It incorporated C and, to a much lesser extent, T, opposite either adduct. In addition, the presence of an A adduct, e.g. {var_epsilon}A, could affect the specificity of …
Date: March 5, 2003
Creator: Hang, Bo; Guliaev, Anton B.; Chenna, Ahmed & Singer, B.
System: The UNT Digital Library
Stress Corrosion Crack Growth Rates for Alloy 82H Welds (open access)

Stress Corrosion Crack Growth Rates for Alloy 82H Welds

Characterize the SCC behavior of 82H welds at temperatures between 288 degrees C and 360 degrees C.
Date: March 5, 2002
Creator: Mills, W. J. & Brown, C. M.
System: The UNT Digital Library
Analysis of Geomechanical Behavior for the Drift Scale Test (open access)

Analysis of Geomechanical Behavior for the Drift Scale Test

The Drift Scale Test (DST) now underway at Yucca Mountain has been simulated using a Drift Scale Distinct Element (DSDE) model. Simulated deformations show good agreement with field deformation measurements. Results indicate most fracture deformation is located above the crown of the Heated Drift. This work is part of the model validation effort for the DSDE model, which is used to assess thermal-mechanical effects on the hydrology of the rock mass surrounding a potential repository.
Date: March 5, 2001
Creator: Blair, S.C.; Carlson, S.R. & Wagoner, J.L.
System: The UNT Digital Library