We demonstrate the detection of magnetic particles carriedby water in a continuous flow using an atomic magnetic gradiometer.Studies on three types of magnetic particles are presented: a singlecobalt particle (diameter ~;150 mum, multi-domain), a suspension ofsuperparamagnetic magnetite particles (diameter ~;1 mum), andferromagnetic cobalt nanoparticles (diameter ~;10 nm, 120 kA/mmagnetization). Estimated detection limits are 20 mum diameter for asingle cobalt particle at a water flow rate 30 ml/min, 5x103 magnetiteparticles at 160 ml/min, and 50 pl for the specific ferromagnetic fluidat 130 ml/min. Possible applications of our method arediscussed.