Scientists in the Physical Biosciences Division of the Ernest Orlando Berkeley National Laboratory (Berkeley Lab) studying transition metals in proteins with fluorescence-detected L-edge absorption spectroscopy have found the measurements to be extremely challenging. The difficulty is that the metal centers are present in very dilute concentrations so that their weak fluorescence is often obscured by strong background signals carbon and oxygen. To solve this problem, the Berkeley group has been working with researchers from the Advanced Detector Group at the Lawrence Livermore National Laboratory on an energy-dispersive superconducting tunnel junction x-ray detector. These devices in principle have the energy resolution needed to reveal the metal signal. The most recent results with the latest version of the detector on Beamline 4.0.1-2 at the Advanced Light Source (ALS) illustrate the promise of the cryogenic detector strategy not only for this application but also for spectroscopy of other types of dilute samples. Transition-metal complexes are key elements in many biologically important processes that are catalyzed by proteins (enzymes), photosynthesis being a prime example. The changes in that occur in electronic structure throughout a catalytic cycle are the subject of much research aimed at understanding the mechanisms of these processes. L-edge x-ray spectroscopy offers …

There are many terms that are used in association with the U.S. Defense Threat Reduction Agency (DTRA) Transparency Project associated with the Mayak Fissile Materials Storage Facility. This is a collection of proposed definitions of these terms.

The US Department of Energy Environmental and Waste Management Tanks Focus Area selected as a strategic initiative the need to identify and develop technologies for remediation of tanks that are known or are suspected to leak. This investigation identified and evaluated technical options for single-shell tank waste retrieval applicable to retrieve waste from potentially leaking tanks. Technologies that minimize leakage use minimal water, and dry retrieval technologies were evaluated. Safety, cost, authorization basis, and schedule risks were identified for each technology to provide River Protection Program with information to evaluate technical and programmatic risk. A workshop was held to identify technology needs and solutions. These approaches grouped into five categories: those related to waste dislodging, waste conveyance, both waste dislodging and conveyance, the deployment platform, and technologies related to leak detection, monitoring, and mitigation. Based on the ranking, six technologies were selected as potential candidates for further evaluation. These items were prioritized into four technologies to recommend for further evaluation 1) Air assisted TORE(R). The TORE(R) produces a precessing vortex core with the ability to convey solids at pre-determined slurry concentrations over great distances. The dry TORE(R) concept uses air to develop the vortex to fluidize dry solids. The TORE(R)the …

The National Ignition Facility (NIF) requires that pulses from each of the 192 laser beams be positioned on target with an accuracy of 50 {micro}m rms. Beam quality must be sufficient to focus a total of 1.8 MJ of 0.351-{micro}m light into a 600-{micro}m-diameter volume. An optimally flat beam wavefront can achieve this pointing and focusing accuracy. The control system corrects wavefront aberrations by performing closed-loop compensation during laser alignment to correct for gas density variations. Static compensation of flashlamp-induced thermal distortion is established just prior to the laser shot. The control system compensates each laser beam at 10 Hz by measuring the wavefront with a 77-lenslet Hartmann sensor and applying corrections with a 39-actuator deformable mirror. The distributed architecture utilizes SPARC AXi computers running Solaris to perform real-time image processing of sensor data and PowerPC-based computers running VxWorks to compute mirror commands. A single pair of SPARC and PowerPC processors accomplishes wavefront control for a group of eight beams. The software design uses proven adaptive optic control algorithms that are implemented in a multi-tasking environment to economically control the beam wavefronts in parallel. Prototype tests have achieved a closed-loop residual error of 0.03 waves rms. aberrations, the spot size …

The purpose of this White Paper is to outline the benefits we expect to receive from Model-Based Engineering and Manufacturing (MBE/M) for the design, analysis, fabrication, and assembly of nuclear weapons for upcoming Life Extension Programs (LEPs). Industry experiences with model-based approaches and the NNSA/DP investments and experiences, discussed in this paper, indicate that model-based methods can achieve reliable refurbished weapons for the stockpile with less cost and time. In this the paper, we list both general and specific benefits of MBE/M for the upcoming LEPs and the metrics for determining the success of model-based approaches. We also present some outstanding issues and challenges to deploying and achieving long-term benefit from the MBE/M. In conclusion, we argue that successful completion of the upcoming LEPs--with very aggressive schedule and funding restrictions--will depend on electronic model-based methods. We ask for a strong commitment from LEP managers throughout the Nuclear Weapons Complex to support deployment and use of MBE/M systems to meet their program needs.

Modeling done at Pacific Northwest National Laboratory (PNNL) in FY2000 predicted improved sensitivity for remote chemical detection by differential absorption lidar (DIAL) if frequency-modulated (FM) lasers were used. This improved sensitivity results from faster averaging away of speckle noise and the recently developed quantum cascade (QC) lasers offer the first practical method for implementing this approach in the molecular fingerprint region of the infrared. To validate this model prediction, a simple laboratory bench FM-DIAL system was designed, assembled, tested, and laboratory-scale experiments were carried out during FY2001. Preliminary results of the FM DIAL experiments confirm the speckle averaging advantages predicted by the models. In addition, experiments were performed to explore the use of hybrid QC - CO2 lasers for achieving sufficient frequency-modulated laser power to enable field experiments at longer ranges (up to one kilometer or so). This approach will allow model validation at realistic ranges much sooner than would be possible if one had to first develop master oscillator - power amplifier systems utilizing only QC devices. Amplification of a QC laser with a CO2 laser was observed in the first hybrid laser experiments, but the low gain and narrow linewidth of the CO2 laser available for these experiments …

This report provides the resluts of detailed hydrologic characterization tests conducted within eleven Hanford Site wells during fiscal year 2000. Detailed characterization tests performed included groundwater-flow characterization; barometric response evaluation; slug tests; single-well tracer tests; constant-rate pumping tests; and in-well, vertical flow tests. Hydraulic property estimates obtained from the detailed hydrologic tests include transmissivity; hydraulic conductivity; specific yield; effective porosity; in-well, lateral flow velocity; aquifer-flow velocity; vertical distribution of hydraulic conductivity (within the well-screen section); and in-well, verticla flow velocity. In addition, local groundwater-flow characteristics (i.e., hydraulic gradient and flow direction) were determined for four sites where detailed well testing was performed.

Six new resource conservation and Recovery Act (RCRA) groundwater monitoring wells were installed at the single-shell tank farm Waste Management Area S-SX in July 2000 through March 2001 in partial fulfillment of Tri-Party Agreement milestones M-24-00L and M-24-00M. This document describes the drilling, construction, sampling and analyses of samples from the wells.

This report documents tests performed to verify that the monitoring system for the 296-Z-7 ventilation stack meets the applicable regulatory criteria regarding the placement of the air sampling probe, sample transport, and stack flow measurement accuracy

This document compiles information of the drilling and construction, well development, pump installation, and sediment and groundwater sampling applicable to the installation of five new RCRA wells in calendar year 2000 - 2001. Appendix A contains the Well Summary Sheets (as-built diagrams); the Well Construction Summary Reports, and the geologist's logs; Appendix B contains physical properties data; and Appendix C contains the borehole geophysical logs.

The overall purpose of the project was to explore and quantify the processes that control the formation and reactivity of biogenic iron microminerals and their impact on the solubility of metal contaminants. The research addressed how surface components of bacterial cells, extracellular organic material, and the aqueous geochemistry of the DIRB microenvironment impacts the mineralogy, chemical state and micromorphology of reduced iron phases.

This pbar note is to describe a recent checkout of the AP3, AP2, AP1 and P2 (F11 to F17) Beam Position Measurement (BPM) systems. The integrity of all BPMs (plates, cables, connectors and RF module) were performed. For each beam-line, the BPM positions polarity were checked: all of the horizontal (vertical) BPMs of a beam-line are to be consistent in defining left/right (up/down) by the sign of the position. The plates impedances have been measured. The position offsets at the output of the RF modules due to cable and connector differences were determined. Anytime an Energy Doubler BPM RF module (EE-107660) was found not working, a working spare was inserted; three AP2 RF modules were replaced. One connector for one of the cables of BPM728 was repaired. Two new cables were pulled and terminated for BPM716 since there was >8dB difference between the cables. In addition, three digitizer boards were replaced.

The two, multifaceted objectives of this research project are to (1) investigate the feasibility of vitrifying 2 or 3 high priority wastes, as identified by the Tank Focus Area group, using iron phosphate glasses (i.e., determine chemical durability as a function of waste loading, establish maximum usable waste loading, evaluate melt characteristics and wasteform properties), and (2) acquire the technical data for the types of raw materials and optimized melting and processing parameters that can be used to produce practical-size (prototype) quantities of iron phosphate glassy wasteforms. This research is intended to provide the scientific and engineering knowledge that is needed to utilize iron phosphate glasses for vitrifying selected nuclear wastes on a production scale.

The HPCCK project was initiated with a kickoff meeting held on June 12, 2001 in Morgantown, WV, which was attended by all project participants. SRI's existing g-RCFR reactor was reconfigured to a SRT-RCFR geometry (Task 1.1). This new design is suitable for performing the NBFZ experiments of Task 1.2. It was decided that the SRT-RCFR apparatus could be modified and used for the HPBO experiments. The purchase, assembly, and testing of required instrumentation and hardware is nearly complete (Task 1.1 and 1.2). Initial samples of PBR coal have been shipped from FWC to SRI (Task 1.1). The ECT device for coal flow measurements used at FWC will not be used in the SRI apparatus and a screw type feeder has been suggested instead (Task 5.1). NEA has completed a upgrade of an existing Fluent simulator for SRI's RCFR to a version that is suitable for interpreting results from tests in the NBFZ configuration (Task 1.3) this upgrade includes finite-rate submodels for devolatilization, secondary volatiles pyrolysis, volatiles combustion, and char oxidation. Plans for an enhanced version of CBK have been discussed and development of this enhanced version has begun (Task 2.5). A developmental framework for implementing pressure and oxygen effects on …

Accurate description of transport pathways on the gross scale, the location of contamination, and characterization of heterogeneity within the vadose zone, are now realized as vital for proper treatment, confinement and stabilization of subsurface contamination at Department of Energy (DOE) waste sites. Electromagnetic (EM) methods are ideal for these tasks since they are directly sensitive to the amount of fluid present in porous media, as well as fluid composition. At many DOE sites it is necessary to employ lower frequency (<1 MHz) or diffusive electromagnetic fields because of the inability of ground penetrating radar (GPR) to penetrate to sufficient depths. The high frequency impedance method, which operated in the diffusive frequency range (10 Hz to 1 MHz), as well as the low end of the spectrum employed by GPR (1MHz-10 MHz), is an ideal technique to delineate and map the aforementioned targets. The method has clearly shown the potential to provide needed information on variations in subsurface saturation due to local storage tanks and perched water zones, as well as mapping geological structures related to the subsurface hydrological properties and heterogeneity within the vadose zone. Although it exhibits certain advantages over other EM methods, the impedance method comes with a …

The concept of Whole Genome Amplification is something that has arisen in the past few years as modifications to the polymerase chain reaction (PCR) have been adapted to replicate regions of genomes which are of biological interest. The applications here are many--forensics, embryonic disease diagnosis, bio terrorism genome detection, ''imoralization'' of clinical samples, microbial diversity, and genotyping. The key question is if DNA can be replicated a genome at a time without bias or non random distribution of the target. Several papers published in the last year and currently in preparation may lead to the conclusion that whole genome amplification may indeed be possible and therefore open up a new avenue to molecular biology.

We have developed an automated purification method for terminator sequencing products based on a magnetic bead technology. This 384-well protocol generates labeled DNA fragments that are essentially free of contaminates for less than $0.005 per reaction. In comparison to laborious ethanol precipitation protocols, this method increases the phred20 read length by forty bases with various DNA templates such as PCR fragments, Plasmids, Cosmids and RCA products. Our method eliminates centrifugation and is compatible with both the MegaBACE 1000 and ABIPrism 3700 capillary instruments. As of September 2001, this method has produced over 1.6 million samples with 93 percent averaging 620 phred20 bases as part of Joint Genome Institutes Production Process.

The existence of species within the plant genus Flaveria with differing leaf cell arrangements and photosynthetic schemes (C3, C4, C3-C4) enabled us to identify genetic elements (promoters, 3'UTRs) that are responsible for the regulation of pre-existing metabolic genes in the pattern required for the high-efficiency C4 photosynthetic scheme. We analyzed DNA elements regulating the rbcS, malic enzyme, and malate dehydrogenase gene families in several species of Flaveria, using transient and stable transformation methods.

The DOE currently has the daunting task of deactivating 7,000 contaminated buildings and decommissioning 900 contaminated buildings that remain from the United States' involvement in nuclear weapons development over the last 50 years.1 In addition to decontaminating the metal and concrete building materials that comprise these building structures, this program will require the decontamination and disposal of more than 180,000 metric tons of scrap metal.1 The DOE is also currently entrenched in a massive cleanup program of their nuclear weapons facilities in an effort to prevent serious environmental problems arising from the already widespread contamination of soils, sediments and groundwaters. Incredibly, more than 600 billion gallons of water and 50 million cubic meters of soil have been contaminated by more than 5700 known DOE groundwater plumes.2 The primary concern is migration of these plumes and their potential threat to local and regional water sources. Sites of particular concern include the Snake River Aquifer in Idaho, contaminated groundwaters at the 100, 200 and 300 areas at Hanford, Washington, Oak Ridge/Savannah River groundwaters and contaminated sediments at the Nevada Test Site.2 Numerous landfills also exist at DOE facilities which are estimated to contain over three million cubic meters of radioactive and hazardous …

Predictions of increasing levels of anthropogenic carbon dioxide (CO{sub 2}) and the specter of global warming have intensified research efforts to identify ways to sequester carbon. A number of novel avenues of research are being considered, including bioprocessing methods to promote and accelerate biosequestration of CO{sub 2} from the environment through the growth of organisms such as coccolithophorids, which are capable of sequestering CO{sub 2} relatively permanently. Calcium and magnesium carbonates are currently the only proven, long-term storage reservoirs for carbon. Whereas organic carbon is readily oxidized and releases CO{sub 2} through microbial decomposition on land and in the sea, carbonates can sequester carbon over geologic time scales. This proposal investigates the use of coccolithophorids--single-celled, marine algae that are the major global producers of calcium carbonate--to sequester CO{sub 2} emissions from power plants. Cultivation of coccolithophorids for calcium carbonate (CaCO{sub 3}) precipitation is environmentally benign and results in a stable product with potential commercial value. Because this method of carbon sequestration does not impact natural ecosystem dynamics, it avoids controversial issues of public acceptability and legality associated with other options such as direct injection of CO{sub 2} into the sea and ocean fertilization. Consequently, cultivation of coccolithophorids could be carried …

Utility load management programs--including direct load control and interruptible load programs--were employed by utilities in the past as system reliability resources. With electricity industry restructuring, the context for these programs has changed; the market that was once controlled by vertically integrated utilities has become competitive, raising the question: can existing load management programs be modified so that they can effectively participate in competitive energy markets? In the short run, modified and/or improved operation of load management programs may be the most effective form of demand-side response available to the electricity system today. However, in light of recent technological advances in metering, communication, and load control, utility load management programs must be carefully reviewed in order to determine appropriate investments to support this transition. This report investigates the feasibility of and options for modifying an existing utility load management system so that it might provide reliability services (i.e. ancillary services) in the competitive markets that have resulted from electricity industry restructuring. The report is a case study of Southern California Edison's (SCE) load management programs. SCE was chosen because it operates one of the largest load management programs in the country and it operates them within a competitive wholesale electricity market. …

An immediate EM science need is a reliable kinetic model that predicts long-term waste glass performance. A framework for which the kinetics of mineral-solution reactions can be used to interpret complex silicate glass properties is required to accurately describe the current and future behavior of glasses as synthetic monoliths or natural analogs. Reaction rates and mechanisms are essential elements in deciphering mineral/material reactivity trends within a compositional series or across a matrix of complex solution compositions. An essential place to start, and the goal of this research, is to quantify the reactivity of crystalline and amorphous SiO2 phases in the complex fluids of natural systems.

OAK-B135 The homeotic gene AGAMOUS (AG) has dual roles in specifying floral organ fate and limiting stem cell proliferation in Arabidopsis flowers. We show here that the floral identity protein LEAFY (LFY), a transcription factor expressed throughout the flower, acts together with the homeodomain protein WUSCHEL (WUS) to activate AG in the center of flowers. WUS was previously identified because of its role in maintaining a stem cell population in the center of both shoot and floral meristems. The unsuspected additional role of WUS in regulating floral homeotic gene expression supports the hypothesis that floral patterning makes use of a general meristem patterning system that was present before flowers evolved. We also show that AG represses WUS at later stages of floral development, thus creating a negative feedback loop that is required for the determinate growth of floral meristems.

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