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Ultrafast gigantic photo-response in (EDO-TTF)2PF6 initiated by 10-fs laser pulses (open access)

Ultrafast gigantic photo-response in (EDO-TTF)2PF6 initiated by 10-fs laser pulses

We photo-exited a charge-ordered organic salt (EDO-TTF)2PF6 with sub-10-fs optical pulses. The photo-induced metallic phase appeared within 80-fs after pumping, characterized by large changes in reflectivity (DELTA R/R~0.8) followed by strong coherent phonon modulation
Date: August 7, 2006
Creator: Schoenlein, Robert William; Itatani, Jiro; Rini, Matteo; Cavalleri, Andrea; Onda, Ken; Ishikawa, Tadahiko et al.
System: The UNT Digital Library
Enhanced geothermal systems (EGS) using CO2 as working fluid - Anovelapproach for generating renewable energy with simultaneoussequestration of carbon (open access)

Enhanced geothermal systems (EGS) using CO2 as working fluid - Anovelapproach for generating renewable energy with simultaneoussequestration of carbon

Responding to the need to reduce atmospheric emissions of carbon dioxide, Donald Brown (2000) proposed a novel enhanced geothermal systems (EGS) concept that would use CO{sub 2} instead of water as heat transmission fluid, and would achieve geologic sequestration of CO{sub 2} as an ancillary benefit. Following up on his suggestion, we have evaluated thermophysical properties and performed numerical simulations to explore the fluid dynamics and heat transfer issues in an engineered geothermal reservoir that would be operated with CO{sub 2}. We find that CO{sub 2} is superior to water in its ability to mine heat from hot fractured rock. CO{sub 2} also has certain advantages with respect to wellbore hydraulics, where larger compressibility and expansivity as compared to water would increase buoyancy forces and would reduce the parasitic power consumption of the fluid circulation system. While the thermal and hydraulic aspects of a CO{sub 2}-EGS system look promising, major uncertainties remain with regard to chemical interactions between fluids and rocks. An EGS system running on CO{sub 2} has sufficiently attractive features to warrant further investigation.
Date: June 7, 2006
Creator: Pruess, Karsten
System: The UNT Digital Library
Holographic Grand Unification (open access)

Holographic Grand Unification

None
Date: May 7, 2006
Creator: Nomura, Yasunori; Poland, David & Tweedie, Brock
System: The UNT Digital Library
Targeting the tumor microenvironment (open access)

Targeting the tumor microenvironment

Despite some notable successes cancer remains, for the most part, a seemingly intractable problem. There is, however, a growing appreciation that targeting the tumor epithelium in isolation is not sufficient as there is an intricate mutually sustaining synergy between the tumor epithelial cells and their surrounding stroma. As the details of this dialogue emerge, new therapeutic targets have been proposed. The FDA has already approved drugs targeting microenvironmental components such as VEGF and aromatase and many more agents are in the pipeline. In this article, we describe some of the 'druggable' targets and processes within the tumor microenvironment and review the approaches being taken to disrupt these interactions.
Date: November 7, 2006
Creator: Kenny, P. A.; Lee, G. Y. & Bissell, M. J.
System: The UNT Digital Library
Reactions of Monomeric [1,2,4-(Me3C)3C5H2]2CeH and CO with orwithout H2:An Experimental and Computational Study (open access)

Reactions of Monomeric [1,2,4-(Me3C)3C5H2]2CeH and CO with orwithout H2:An Experimental and Computational Study

Addition of CO to [1,2,4-(Me3C)3C5H2]2CeH, Cp'2CeH, intoluene yields the cis (Cp'2Ce)2(mu-OCHCHO), in which the cis enediolategroup bridges the two metallocene fragments. The cis enediolatequantitatively isomerizes intramolecularly to the trans-enediolate inC6D6 at 100oC over seven months. When the solvent is pentane,Cp'2Ce(OCH2)CeCp'2 forms, in which the oxomethylene group or theformaldehyde dianion bridges the two metallocene fragments. The cisenediolate is suggested to form by insertion of CO into the Ce-C bond ofCp'2Ce(OCH2)CeCp'2 generating Cp'2CeOCH2COCeCp'2. The stereochemistry ofthe cis-enediolate is determined by a 1,2-hydrogen shift in the OCH2COfragment that has the OC(H2) bond anti periplanar relative to the carbenelone pair. The bridging oxomethylene complex reacts with H2, but not withCH4, to give Cp'2CeOMe, which is also the product of the reaction betweenCp'2CeH and a mixture of CO and H2. The oxomethylene complex reacts withCO to give the cis enediolate complex. DFT calculations on C5H5 modelmetallocenes show that the reaction of Cp2CeH with CO and H2 to giveCp2CeOMe is exoergic by 50 kcal mol-1. The net reaction proceeds by aseries of elementary reactions that occur after the formyl complex,Cp2Ce(eta-2 CHO), is formed by further reaction with H2. The key pointthat emerges from the calculated potential energy surface is thebifunctional nature of the metal formyl in …
Date: September 7, 2006
Creator: Werkema, Evan L.; Maron, Laurent; Eisenstein, Odile & Andersen, Richard A.
System: The UNT Digital Library
Insulator-to-metal transition induced by mid-IR vibrational excitation in a magnetoresistive manganite (open access)

Insulator-to-metal transition induced by mid-IR vibrational excitation in a magnetoresistive manganite

Selective vibrational excitation of insulating Pr0.7Ca0.3MnO3 at 17 ?m triggers a transition to a metallic state. A four order of magnitude drop of the sample resistivity and ultrafast, nanosecond-lived reflectivity changes are observed
Date: August 7, 2006
Creator: Schoenlein, Robert William; Rini, Matteo; Itatani, Jiro; Tomioka, Yasuhide; Tokura, Yoshinori; Schoenlein, Robert W. et al.
System: The UNT Digital Library
MODELING OF NI-CR-MO BASED ALLOYS: PART II - KINETICS (open access)

MODELING OF NI-CR-MO BASED ALLOYS: PART II - KINETICS

The CALPHAD approach is applied to kinetic studies of phase transformations and aging of prototypes of Ni-Cr-Mo-based alloys selected for waste disposal canisters in the Yucca Mountain Project (YMP). Based on a previous study on alloy stability for several candidate alloys, the thermodynamic driving forces together with a newly developed mobility database have been used to analyze diffusion-controlled transformations in these Ni-based alloys. Results on precipitation of the Ni{sub 2}Cr-ordered phase in Ni-Cr and Ni-Cr-Mo alloys, and of the complex P- and {delta}-phases in a surrogate of Alloy 22 are presented, and the output from the modeling are compared with experimental data on aging.
Date: July 7, 2006
Creator: Turchi, P A; Kaufman, L & Liu, Z
System: The UNT Digital Library
Quantum entanglement of baby universes (open access)

Quantum entanglement of baby universes

We study quantum entanglements of baby universes which appear in non-perturbative corrections to the OSV formula for the entropy of extremal black holes in type IIA string theory compactified on the local Calabi-Yau manifold defined as a rank 2 vector bundle over an arbitrary genus G Riemann surface. This generalizes the result for G=1 in hep-th/0504221. Non-perturbative terms can be organized into a sum over contributions from baby universes, and the total wave-function is their coherent superposition in the third quantized Hilbert space. We find that half of the universes preserve one set of supercharges while the other half preserve a different set, making the total universe stable but non-BPS. The parent universe generates baby universes by brane/anti-brane pair creation, and baby universes are correlated by conservation of non-normalizable D-brane charges under the process. There are no other source of entanglement of baby universes, and all possible states are superposed with the equal weight.
Date: December 7, 2006
Creator: Essman, Eric P.; Aganagic, Mina; Okuda, Takuya & Ooguri, Hirosi
System: The UNT Digital Library
1,2-HOIQO--A highly versatile 1,2-HOPO analog (open access)

1,2-HOIQO--A highly versatile 1,2-HOPO analog

A cyclic, bidentate hydroxamic acid binding unit based on an isoquinoline scaffold has been utilized for the synthesis of a hexadentate tripodal ligand based on the TREN backbone. This prototype for a new class of multidentate chelators forms mononuclear iron(III) complexes and one-dimensional coordination polymers with lanthanide(III) cations. The latter has been determined by single crystal X-ray analysis of the cerium species. The solid state structure in the monoclinic space group P2{sub 1}/c (C{sub 36}H{sub 34}CeN{sub 7}O{sub 11}, a = 12.341(2){angstrom}, b = 26.649(4){angstrom}, c = 10.621(2){angstrom}, {alpha} = {gamma} = 90{sup o}, {beta} = 96.753(3){sup o}, V = 3468.6(9) {angstrom}{sup 3}, Z = 4) exhibits a trigonal-dodecahedral environment around the cerium cation. The proof of concept for the versatility of the new scaffold has been shown by the modification of the crucial precursor 3-carboxyiso-coumarin through electrophilic aromatic substitutions to yield the corresponding chlorosulfonated and nitrated analogs.
Date: August 7, 2006
Creator: Seitz, Michael; Pluth, Michael D. & Raymond, Kenneth N.
System: The UNT Digital Library
High Pressure Materials Research using Advanced Third-Generation Synchrotron X-ray (open access)

High Pressure Materials Research using Advanced Third-Generation Synchrotron X-ray

The recent discoveries of nonmolecular phases of simple molecular solids [1,2] demonstrate the proof-of-the-principles for producing exotic phases by application of high pressure. Modern advances in theoretical and computational methodologies now make possible to explain or even predict novel structures and properties in a relatively wide range of length scales on the basis of thermodynamic stability [3]. Equally important in materials research is the recent developments in advanced x-ray and laser diagnostics that enable in-situ observations at the formidable pressure-temperature conditions [4]. Having benefited by all these developments, we discuss the first principle of the pressure-induced chemistry, 'Mbar Chemistry', with a few examples that may have important implications in materials research.
Date: July 7, 2006
Creator: Yoo, C. S.; Iota, V.; Park, J.; Lee, G.; Evans, W.; Jenei, Z. et al.
System: The UNT Digital Library
Temperature sensitivity of Cu K(alpha) imaging efficiency using a spherical Bragg reflecting crystal (open access)

Temperature sensitivity of Cu K(alpha) imaging efficiency using a spherical Bragg reflecting crystal

The Vulcan laser facility at the Rutherford Appleton Laboratory was used to study the interaction of a 75 J 10 ps, high intensity laser beam with low-mass solid, Cu targets. Two instruments were fielded as diagnostics of the Cu K-shell emission from the targets: A single photon counting CCD spectrometer provided the absolute K{sub {alpha}} yield and a spherically bent Bragg crystal recorded 2D monochromatic images with a spatial resolution of 10 {micro}m. Due to the shifting and broadening of the K{sub {alpha}} spectral lines with increasing temperature, there is a temperature dependence of the crystal collection efficiency. This provides a temperature diagnostic when cross calibrated against a single hit CCD spectrometer, and it affects measurements of the spatial pattern of electron transport. The experimental data showing changing collection efficiency are presented. The results are discussed in light of modeling of the temperature-dependent spectrum of Cu K-shell emission.
Date: August 7, 2006
Creator: Akli, K. U.; Key, M. H.; Chung, H. K.; Hansen, S. B.; Freeman, R. R.; Chen, M. H. et al.
System: The UNT Digital Library
Electronic Excitations and Metal-Insulator Transition inPoly(3-hexylthiophene) Organic Field-Effect Transistors (open access)

Electronic Excitations and Metal-Insulator Transition inPoly(3-hexylthiophene) Organic Field-Effect Transistors

We carry out a comprehensive theoretical and experimentalstudy of charge injection in poly(3-hexylthiophene) (P3HT) to determinethe most likely scenario for metal-insulator transition in this system.Wecalculate the optical-absorption frequencies corresponding to a polaronand a bipolaron lattice in P3HT. We also analyze the electronicexcitations for three possible scenarios under which a first- or asecond-order metal-insulator transition can occur in doped P3HT. Thesetheoretical scenarios are compared with data from infrared absorptionspectroscopy on P3HT thin-film field-effect transistors (FETs). Ourmeasurements and theoretical predictions suggest that charge-inducedlocalized states in P3HT FETs are bipolarons and that the highest dopinglevel achieved in our experiments approaches that required for afirst-order metal-insulator transition.
Date: November 7, 2006
Creator: Sai, N.; Li, Z.Q.; Martin, M.C.; Basov, D.N. & Di Ventra, M.
System: The UNT Digital Library
Telomere dysfunction and cell survival: roles for distinctTIN2-containing complexes (open access)

Telomere dysfunction and cell survival: roles for distinctTIN2-containing complexes

Telomeres are maintained by three DNA binding proteins, TRF1, TRF2 and POT1, and several associated factors. One factor, TIN2, binds TRF1 and TRF2 directly and POT1 indirectly. These and two other proteins form a soluble complex that may be the core telomere-maintenance complex. It is not clear whether subcomplexes exist or function in vivo. Here, we provide evidence for two TIN2 subcomplexes with distinct functions in human cells. TIN2 ablation by RNA interference caused telomere uncapping and p53-independent cell death in all cells tested. However, we isolated two TIN2 complexes from cell lysates, each selectively sensitive to a TIN2 mutant (TIN2-13, TIN2-15C). In cells with wild-type p53 function, TIN2-15C was more potent than TIN2-13 in causing telomere uncapping and eventual growth arrest. In cells lacking p53 function, TIN215C more than TIN2-13 caused genomic instability and cell death. Thus, TIN2 subcomplexes likely have distinct functions in telomere maintenance, and may provide selective targets for eliminating cells with mutant p53.
Date: November 7, 2006
Creator: Kim, Sahn-Ho; Davalos, Albert R.; Heo, Seok-Jin; Rodier, Francis; Beausejour, Christian; Kaminker, Patrick et al.
System: The UNT Digital Library
Probing QCD with Rare Charmless $B$ Decays (open access)

Probing QCD with Rare Charmless $B$ Decays

Rare charmless hadronic B decays are a good testing ground for QCD. In this paper we describe a selection of new measurements made by the BABAR and BELLE collaborations.
Date: July 7, 2006
Creator: Gradl, Wolfgang
System: The UNT Digital Library
Structures in Molecular Clouds: Modeling (open access)

Structures in Molecular Clouds: Modeling

None
Date: March 7, 2006
Creator: Kane, J. O.; Ryutov, D. D.; Remington, B. A.; Pound, M. & Mizuta, A.
System: The UNT Digital Library
SABER Optical Design (open access)

SABER Optical Design

SABER, the South Arc Beam Experimental Region, is a proposed new beam line facility designed to replace the Final Focus Test Beam at SLAC. In this paper, we outline the optical design features and beam parameters now envisioned for SABER. A magnetic chicane to compress positron bunches for SABER and a bypass line that could transport electrons or positrons from the two-thirds point of the linac to SABER, bypassing the LCLS systems, are also discussed.
Date: July 7, 2006
Creator: Erickson, R.; Bane, K.; Emma, P. & Nosochkov, Y.
System: The UNT Digital Library
Development and Implementation of an Ergonomics Program for Research Laboratories (open access)

Development and Implementation of an Ergonomics Program for Research Laboratories

None
Date: March 7, 2006
Creator: Roberts, T.; Yu, E. & Herbert, R.
System: The UNT Digital Library
Possible Rhic Upgrades With Superbunches. (open access)

Possible Rhic Upgrades With Superbunches.

None
Date: March 7, 2006
Creator: Fischer, W.; Blaskiewicz, M. & Wei, J.
System: The UNT Digital Library
Picosecond x-ray absorption spectroscopy of photochemical transient species in solution (open access)

Picosecond x-ray absorption spectroscopy of photochemical transient species in solution

A photoinduced Fe(II) spin crossover reaction in solution is studied with ultrafast x-ray absorption spectroscopy. The iron-nitrogen bond lengthens by 0.21+-0.03 Angstrom in the high-spin transient excited state relative to the ground state.
Date: August 7, 2006
Creator: Schoenlein, Robert William; Khalil, Munira; Marcus, Matthew A.; Smeigh, Amanda L.; McCusker, James K.; Chong, Henry H.W. et al.
System: The UNT Digital Library
How Can We Test Seesaw Experimentally? (open access)

How Can We Test Seesaw Experimentally?

The seesaw mechanism for the small neutrino mass has been a popular paradigm, yet it has been believed that there is no way to test it experimentally. We present a conceivable outcome from future experiments that would convince us of the seesaw mechanism. It would involve a variety of data from LHC, ILC, cosmology, underground, and low-energy flavor violation experiments to establish the case.
Date: June 7, 2006
Creator: Buckley, Matthew R. & Murayama, Hitoshi
System: The UNT Digital Library
A 3D Model for Ion Beam Formation and Transport Simulation (open access)

A 3D Model for Ion Beam Formation and Transport Simulation

In this paper, we present a three-dimensional model forself-consistently modeling ion beam formation from plasma ion sources andtransporting in low energy beam transport systems. A multi-sectionoverlapped computational domain has been used to break the originaltransport system into a number of weakly coupled subsystems. Within eachsubsystem, macro-particle tracking is used to obtain the charge densitydistribution in this subdomain. The three-dimensional Poisson equation issolved within the subdomain after each particle tracking to obtain theself-consistent space-charge forces and the particle tracking is repeateduntil the solution converges. Two new Poisson solvers based on acombination of the spectral method and the finite difference multigridmethod have been developed to solve the Poisson equation in cylindricalcoordinates for the straight beam transport section and in Frenet-Serretcoordinates for the bending magnet section. This model can have importantapplication in design and optimization of the low energy beam line opticsof the proposed Rare Isotope Accelerator (RIA) front end.
Date: February 7, 2006
Creator: Qiang, J.; Todd, D. & Leitner, D.
System: The UNT Digital Library
Design of a combinatorial dna microarray for protein-dnainteraction studies (open access)

Design of a combinatorial dna microarray for protein-dnainteraction studies

Background: Discovery of precise specificity oftranscription factors is an important step on the way to understandingthe complex mechanisms of gene regulation in eukaryotes. Recently,doublestranded protein-binding microarrays were developed as apotentially scalable approach to tackle transcription factor binding siteidentification. Results: Here we present an algorithmic approach toexperimental design of a microarray that allows for testing fullspecificity of a transcription factor binding to all possible DNA bindingsites of a given length, with optimally efficient use of the array. Thisdesign is universal, works for any factor that binds a sequence motif andis not species-specific. Furthermore, simulation results show that dataproduced with the designed arrays is easier to analyze and would resultin more precise identification of binding sites. Conclusion: In thisstudy, we present a design of a double stranded DNA microarray forprotein-DNA interaction studies and show that our algorithm allowsoptimally efficient use of the arrays for this purpose. We believe such adesign will prove useful for transcription factor binding siteidentification and other biological problems.
Date: July 7, 2006
Creator: Mintseris, Julian & Eisen, Michael B.
System: The UNT Digital Library
Amphotericin B induced interdigitation of apolipoprotein stabilized nanodisk bilayers (open access)

Amphotericin B induced interdigitation of apolipoprotein stabilized nanodisk bilayers

Amphotericin B nanodisks (AMB-ND) are ternary complexes of AMB, phospholipid (PL) and apolipoprotein organized as discrete nanometer scale disk-shaped bilayers. In gel filtration chromatography experiments, empty ND lacking AMB elute as a single population of particles with a molecular weight in the range of 200 kDa. AMB-ND formulated at a 4:1 PL:AMB weight ratio, separated into two peaks. Peak 1 eluted at the position of control ND lacking AMB while the second peak, containing all of the AMB present in the original sample, eluted in the void volume. When ND prepared with increased AMB (1:1 phospholipid:AMB molar ratio) were subjected to gel filtration chromatography, an increased proportion of phospholipid and apolipoprotein were recovered in the void volume with the AMB. Prior to gel filtration the AMB-ND sample could be passed through a 0.22 {micro}m filter without loss of AMB while the voided material was lost. Native gel electrophoresis studies corroborated the gel permeation chromatography data. Far UV circular dichroism analyses revealed that apoA-I associated with AMB-ND denatures at a lower guanidine HCl concentration than apoA-I associated with ND lacking AMB. Atomic force microscopy revealed that AMB induces compression of the ND bilayer thickness consistent with bilayer interdigitation, a phenomenon that …
Date: December 7, 2006
Creator: Nguyen, T; Weers, P M; Sulchek, T; Hoeprich, P D & Ryan, R O
System: The UNT Digital Library
Lattice motions from THz phonon-polaritons measured with femtosecond x-ray diffraction (open access)

Lattice motions from THz phonon-polaritons measured with femtosecond x-ray diffraction

We use femtosecond x-ray diffraction to measure the coherent lattice displacements associated with the excitation and propagation of THz phonon polaritons in LiTaO3.
Date: August 7, 2006
Creator: Schoenlein, Robert William; Cavalleri, A.; Wall, S.; Simpson, C.; Statz, E.; Ward, D.W. et al.
System: The UNT Digital Library